5K3HA

Crystals structure of acyl-coa oxidase-1 in caenorhabditis elegans, apo form-ii
Total Genus 263
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
263
sequence length
668
structure length
634
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIKPYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERVLDLHALTSGLKSVVTHQTGEGIEARMACGGHGYSMASYISEIYGVAIGGNMVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Acyl-coenzyme A oxidase
publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 263
structure length 634
sequence length 668
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3hA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3hA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3hA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3hA02
3P4TA 3BNGA 2J7AA 3AFFA 3MKHA 4XVXA 2JBTA 3GQTA 3D1IA 4HR3A 4N5FA 3S7WA 3OWAA 4OO2A 2YYMA 4JEKA 1OAHA 5K3JA 2A1TA 2RFQA 3LGQA 4G5EA 2UXWA 3SCEA 2DVLA 3D9DA 2IX5A 3FO3A 2FONA 2VR0A 1EGDA 2OR0A 4L3YA 4Q5CA 1R2JA 1EGEA 1GU6A 4U83A 2R0MA 4Q4UA 3RKHA 1WS9A 4X28A 2WBIA 4P13A 2IX6A 3EOMA 3GNCA 1JQIA 3X0XA 3BNJA 1W07A 5K3HA 3M9VA 3MPJA 4Q5BA 2ZAFA 3D9GA 1FS8A 4L1FA 1FS7A 2YYKA 3SXQA 3MPIA 3MDEA 1EGCA 2YYIA 1UDYA 4L3ZA 2JIFA 2PG0A 2D29A 3B96A 3F29A 4O5MA 3L1TA 4M9AA 1IS2A 3D9FA 2EBAA 4Q0TA 1RX0A 5K3GA 3UBRA 2E80A 4IV6A 1T9GA 2DDHA 3AFEA 4W9UA 3BNFA 3MXLA 4ZXVA 2ZO5A 4KTOA 3MDDA 3SF6A 3TTBA 3TORA 3FCJA 2YYJA 1UKWA 4KCFA 5K3IA 2JBSA 2RDZA 3MMOA 3R7KA 1U8VA 2OT4A 2CX9A 2REHA 3D9EA 3NF4A 3UU9A 3PFDA 4Q1OA 3SWOA 2YYGA 4X28C 3II9A 2VIGA 1FS9A 4IRNA 1BUCA 3EONA 3GM6A 1SIQA 4WJYA 3X0YA 2RF7A 4L3XA 2C12A 3OIBA 2YYLA 3HWCA 2C0UA 4RM7A 3BNHA 4L38A 3OWMA 2JBRA 1IVHA 3D6BA 4DOYA 4NXLA 1QDBA 2R0NA 1SIRA 4Q17A 4ZYJA 2E81A 2Z1QA 3LG1A
chains in the Genus database with same CATH superfamily
4H85A 2XS8A 3P4TA 3BNGA 3C3LA 2J7AA 3AFFA 3MKHA 2BU8A 4G97A 4AKIA 4XVXA 3N0RA 2JBTA 4AI6A 3GQTA 4H7QA 3D1IA 4HR3A 2CJ5A 2FP1A 4N5FA 2CJ6A 3CRLA 2BU2A 3U33A 4F0XA 3S7WA 4FF3A 1RJ1A 3C46A 4FF4A 2Q8FA 3OWAA 3Q23A 3DJLA 2AO2A 4OO2A 2YYMA 5M4KA 1X91A 4JEKA 5J71A 4FF1A 1Y8NA 4DZYA 1OAHA 5K3JA 2A1TA 2RFQA 1R3BA 2BU5A 5M4PA 1XFUA 3LGQA 1SC5A 4G5EA 2UXWA 3SCEA 1X90A 2DVLA 3D9DA 2EBFX 2IX5A 2R02A 3FO3A 3TZ5A 2FONA 1XFYA 2VR0A 1EGDA 2ZDYA 4MP2A 1XFVA 4HKRA 4E02A 2OR0A 3X29A 2PNRA 4JIOA 5BRKA 2PO4A 4L3YA 4Q5CA 1R2JA 1EGEA 1GU6A 3TZ4A 4U83A 2OEXA 2R0MA 4Q4UA 3TZ2A 3RKHA 1WS9A 4E01A 4X28A 2CJ7A 3Q22A 2WBIA 4H81A 5BRMA 4P13A 2IX6A 1GJVA 4KS9A 4AKHA 3EOMA 3GNCA 1JQIA 1X8ZA 5M4MA 3Q24A 3X0XA 1Y8PA 3BNJA 3CRKA 1W07A 2EC5A 5K3HA 2QR4A 3VKHA 3M9VA 3MPJA 4Q5BA 2ZAFA 3D9GA 1FS8A 4L1FA 1FS7A 2XS1A 1LVCA 2YYKA 2EBHX 4JIZA 4V25A 4V26A 3MPIA 3MDEA 1EGCA 1RJ4A 1XG2B 2YYIA 1UDYA 2HJNA 1GKZA 2VF1A 1K8TA 2ZKJA 4L3ZA 2JIFA 4FF2A 3Q0AA 2Q8IA 2ZDXA 3C2PA 2PG0A 1XFZA 5B5WA 2D29A 3B96A 2XQRB 3F29A 5GJWE 4O5MA 2YGWA 3L1TA 4M9AA 1IS2A 1RP3A 3D9FA 1GKXA 2EBAA 1PI1A 1JM6A 1RX0A 2BTZA 5K3GA 4Q0TA 5B6BA 4KSAA 3TZ0A 3UBRA 2E80A 4IV6A 2Q8HA 5B5VA 1T9GA 2DDHA 1XFXA 4J1VA 1Y8OA 3AFEA 4W9UA 2BU6A 3BNFA 3MXLA 4ZXVA 2BU7A 2OEVA 2ZO5A 4KTOA 3MDDA 2GBBA 2R05A 3SF6A 4HKSA 5GJVE 3TORA 3TTBA 3FCJA 2YYJA 1UKWA 4KCFA 5K3IA 1Y0VA 2JBSA 1XFWA 2FP2A 2RDZA 3MMOA 4E00A 3R7KA 1U8VA 2OT4A 2CX9A 2REHA 3D9EA 3NF4A 5EZ3A 4MPEA 2LFWA 3UU9A 3PFDA 1K93A 4Q1OA 3KMLA 4MP7A 3SWOA 4P79A 2YYGA 4X28C 2Q8GA 3II9A 2VIGA 1S26A 2AZEA 1FS9A 5J6AA 4IRNA 3VKGA 1BUCA 4LQSB 3EONA 3GM6A 1SIQA 4WJYA 3X0YA 2RF7A 4L3XA 2C12A 3OIBA 2CJ4A 2YYLA 3HWCA 4LQQB 4MPNA 1K90A 2C0UA 4RM7A 2R03A 3BNHA 4L38A 2OJQA 3OWMA 3VADA 2JBRA 1IVHA 3D6BA 4DOYA 3SXQA 1SK6A 2E0AA 4AKGA 4NXLA 2CJ8A 3D2RA 1QDBA 4QICA 2F6LA 5M4NA 4KSFA 3CE2A 2R0NA 4MPCA 1SIRA 4Q17A 4ZYJA 1PK0A 2E81A 2Z1QA 4FZ4A 3LG1A
chains in the Genus database with same CATH topology
3P4TA 3BNGA 2J7AA 3AFFA 3MKHA 4XVXA 2JBTA 3GQTA 3D1IA 4HR3A 4N5FA 3S7WA 3OWAA 4OO2A 2YYMA 4JEKA 1OAHA 5K3JA 2A1TA 2RFQA 3LGQA 4G5EA 2UXWA 3SCEA 2DVLA 3D9DA 2IX5A 3FO3A 2FONA 2VR0A 1EGDA 2OR0A 4L3YA 4Q5CA 1R2JA 1EGEA 1GU6A 4U83A 2R0MA 4Q4UA 3RKHA 1WS9A 4X28A 2WBIA 4P13A 2IX6A 3EOMA 3GNCA 1JQIA 3X0XA 3BNJA 1W07A 5K3HA 3M9VA 3MPJA 4Q5BA 2ZAFA 3D9GA 1FS8A 4L1FA 1FS7A 2YYKA 3SXQA 3MPIA 3MDEA 1EGCA 2YYIA 1UDYA 4L3ZA 2JIFA 2PG0A 2D29A 3B96A 3F29A 4O5MA 3L1TA 4M9AA 1IS2A 3D9FA 2EBAA 4Q0TA 1RX0A 5K3GA 3UBRA 2E80A 4IV6A 1T9GA 2DDHA 3AFEA 4W9UA 3BNFA 3MXLA 4ZXVA 2ZO5A 4KTOA 3MDDA 3SF6A 3TTBA 3TORA 3FCJA 2YYJA 1UKWA 4KCFA 5K3IA 2JBSA 2RDZA 3MMOA 3R7KA 1U8VA 2OT4A 2CX9A 2REHA 3D9EA 3NF4A 3UU9A 3PFDA 4Q1OA 3SWOA 2YYGA 4X28C 3II9A 2VIGA 1FS9A 4IRNA 1BUCA 3EONA 3GM6A 1SIQA 4WJYA 3X0YA 2RF7A 4L3XA 2C12A 3OIBA 2YYLA 3HWCA 2C0UA 4RM7A 3BNHA 4L38A 3OWMA 2JBRA 1IVHA 3D6BA 4DOYA 4NXLA 1QDBA 2R0NA 1SIRA 4Q17A 4ZYJA 2E81A 2Z1QA 3LG1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P4T A;  3BNG A;  2J7A A;  3AFF A;  3MKH A;  4XVX A;  2JBT A;  3GQT A;  3D1I A;  4HR3 A;  4N5F A;  3S7W A;  3OWA A;  4OO2 A;  2YYM A;  4JEK A;  1OAH A;  5K3J A;  2A1T A;  2RFQ A;  3LGQ A;  4G5E A;  2UXW A;  3SCE A;  2DVL A;  3D9D A;  2IX5 A;  3FO3 A;  2FON A;  2VR0 A;  1EGD A;  2OR0 A;  4L3Y A;  4Q5C A;  1R2J A;  1EGE A;  1GU6 A;  4U83 A;  2R0M A;  4Q4U A;  3RKH A;  1WS9 A;  4X28 A;  2WBI A;  4P13 A;  2IX6 A;  3EOM A;  3GNC A;  1JQI A;  3X0X A;  3BNJ A;  1W07 A;  5K3H A;  3M9V A;  3MPJ A;  4Q5B A;  2ZAF A;  3D9G A;  1FS8 A;  4L1F A;  1FS7 A;  2YYK A;  3SXQ A;  3MPI A;  3MDE A;  1EGC A;  2YYI A;  1UDY A;  4L3Z A;  2JIF A;  2PG0 A;  2D29 A;  3B96 A;  3F29 A;  4O5M A;  3L1T A;  4M9A A;  1IS2 A;  3D9F A;  2EBA A;  4Q0T A;  1RX0 A;  5K3G A;  3UBR A;  2E80 A;  4IV6 A;  1T9G A;  2DDH A;  3AFE A;  4W9U A;  3BNF A;  3MXL A;  4ZXV A;  2ZO5 A;  4KTO A;  3MDD A;  3SF6 A;  3TTB A;  3TOR A;  3FCJ A;  2YYJ A;  1UKW A;  4KCF A;  5K3I A;  2JBS A;  2RDZ A;  3MMO A;  3R7K A;  1U8V A;  2OT4 A;  2CX9 A;  2REH A;  3D9E A;  3NF4 A;  3UU9 A;  3PFD A;  4Q1O A;  3SWO A;  2YYG A;  4X28 C;  3II9 A;  2VIG A;  1FS9 A;  4IRN A;  1BUC A;  3EON A;  3GM6 A;  1SIQ A;  4WJY A;  3X0Y A;  2RF7 A;  4L3X A;  2C12 A;  3OIB A;  2YYL A;  3HWC A;  2C0U A;  4RM7 A;  3BNH A;  4L38 A;  3OWM A;  2JBR A;  1IVH A;  3D6B A;  4DOY A;  4NXL A;  1QDB A;  2R0N A;  1SIR A;  4Q17 A;  4ZYJ A;  2E81 A;  2Z1Q A;  3LG1 A; 
#chains in the Genus database with same CATH topology
 4H85 A;  2XS8 A;  3P4T A;  3BNG A;  3C3L A;  2J7A A;  3AFF A;  3MKH A;  2BU8 A;  4G97 A;  4AKI A;  4XVX A;  3N0R A;  2JBT A;  4AI6 A;  3GQT A;  4H7Q A;  3D1I A;  4HR3 A;  2CJ5 A;  2FP1 A;  4N5F A;  2CJ6 A;  3CRL A;  2BU2 A;  3U33 A;  4F0X A;  3S7W A;  4FF3 A;  1RJ1 A;  3C46 A;  4FF4 A;  2Q8F A;  3OWA A;  3Q23 A;  3DJL A;  2AO2 A;  4OO2 A;  2YYM A;  5M4K A;  1X91 A;  4JEK A;  5J71 A;  4FF1 A;  1Y8N A;  4DZY A;  1OAH A;  5K3J A;  2A1T A;  2RFQ A;  1R3B A;  2BU5 A;  5M4P A;  1XFU A;  3LGQ A;  1SC5 A;  4G5E A;  2UXW A;  3SCE A;  1X90 A;  2DVL A;  3D9D A;  2EBF X;  2IX5 A;  2R02 A;  3FO3 A;  3TZ5 A;  2FON A;  1XFY A;  2VR0 A;  1EGD A;  2ZDY A;  4MP2 A;  1XFV A;  4HKR A;  4E02 A;  2OR0 A;  3X29 A;  2PNR A;  4JIO A;  5BRK A;  2PO4 A;  4L3Y A;  4Q5C A;  1R2J A;  1EGE A;  1GU6 A;  3TZ4 A;  4U83 A;  2OEX A;  2R0M A;  4Q4U A;  3TZ2 A;  3RKH A;  1WS9 A;  4E01 A;  4X28 A;  2CJ7 A;  3Q22 A;  2WBI A;  4H81 A;  5BRM A;  4P13 A;  2IX6 A;  1GJV A;  4KS9 A;  4AKH A;  3EOM A;  3GNC A;  1JQI A;  1X8Z A;  5M4M A;  3Q24 A;  3X0X A;  1Y8P A;  3BNJ A;  3CRK A;  1W07 A;  2EC5 A;  5K3H A;  2QR4 A;  3VKH A;  3M9V A;  3MPJ A;  4Q5B A;  2ZAF A;  3D9G A;  1FS8 A;  4L1F A;  1FS7 A;  2XS1 A;  1LVC A;  2YYK A;  2EBH X;  4JIZ A;  4V25 A;  4V26 A;  3MPI A;  3MDE A;  1EGC A;  1RJ4 A;  1XG2 B;  2YYI A;  1UDY A;  2HJN A;  1GKZ A;  2VF1 A;  1K8T A;  2ZKJ A;  4L3Z A;  2JIF A;  4FF2 A;  3Q0A A;  2Q8I A;  2ZDX A;  3C2P A;  2PG0 A;  1XFZ A;  5B5W A;  2D29 A;  3B96 A;  2XQR B;  3F29 A;  5GJW E;  4O5M A;  2YGW A;  3L1T A;  4M9A A;  1IS2 A;  1RP3 A;  3D9F A;  1GKX A;  2EBA A;  1PI1 A;  1JM6 A;  1RX0 A;  2BTZ A;  5K3G A;  4Q0T A;  5B6B A;  4KSA A;  3TZ0 A;  3UBR A;  2E80 A;  4IV6 A;  2Q8H A;  5B5V A;  1T9G A;  2DDH A;  1XFX A;  4J1V A;  1Y8O A;  3AFE A;  4W9U A;  2BU6 A;  3BNF A;  3MXL A;  4ZXV A;  2BU7 A;  2OEV A;  2ZO5 A;  4KTO A;  3MDD A;  2GBB A;  2R05 A;  3SF6 A;  4HKS A;  5GJV E;  3TOR A;  3TTB A;  3FCJ A;  2YYJ A;  1UKW A;  4KCF A;  5K3I A;  1Y0V A;  2JBS A;  1XFW A;  2FP2 A;  2RDZ A;  3MMO A;  4E00 A;  3R7K A;  1U8V A;  2OT4 A;  2CX9 A;  2REH A;  3D9E A;  3NF4 A;  5EZ3 A;  4MPE A;  2LFW A;  3UU9 A;  3PFD A;  1K93 A;  4Q1O A;  3KML A;  4MP7 A;  3SWO A;  4P79 A;  2YYG A;  4X28 C;  2Q8G A;  3II9 A;  2VIG A;  1S26 A;  2AZE A;  1FS9 A;  5J6A A;  4IRN A;  3VKG A;  1BUC A;  4LQS B;  3EON A;  3GM6 A;  1SIQ A;  4WJY A;  3X0Y A;  2RF7 A;  4L3X A;  2C12 A;  3OIB A;  2CJ4 A;  2YYL A;  3HWC A;  4LQQ B;  4MPN A;  1K90 A;  2C0U A;  4RM7 A;  2R03 A;  3BNH A;  4L38 A;  2OJQ A;  3OWM A;  3VAD A;  2JBR A;  1IVH A;  3D6B A;  4DOY A;  3SXQ A;  1SK6 A;  2E0A A;  4AKG A;  4NXL A;  2CJ8 A;  3D2R A;  1QDB A;  4QIC A;  2F6L A;  5M4N A;  4KSF A;  3CE2 A;  2R0N A;  4MPC A;  1SIR A;  4Q17 A;  4ZYJ A;  1PK0 A;  2E81 A;  2Z1Q A;  4FZ4 A;  3LG1 A; 
#chains in the Genus database with same CATH homology
 3P4T A;  3BNG A;  2J7A A;  3AFF A;  3MKH A;  4XVX A;  2JBT A;  3GQT A;  3D1I A;  4HR3 A;  4N5F A;  3S7W A;  3OWA A;  4OO2 A;  2YYM A;  4JEK A;  1OAH A;  5K3J A;  2A1T A;  2RFQ A;  3LGQ A;  4G5E A;  2UXW A;  3SCE A;  2DVL A;  3D9D A;  2IX5 A;  3FO3 A;  2FON A;  2VR0 A;  1EGD A;  2OR0 A;  4L3Y A;  4Q5C A;  1R2J A;  1EGE A;  1GU6 A;  4U83 A;  2R0M A;  4Q4U A;  3RKH A;  1WS9 A;  4X28 A;  2WBI A;  4P13 A;  2IX6 A;  3EOM A;  3GNC A;  1JQI A;  3X0X A;  3BNJ A;  1W07 A;  5K3H A;  3M9V A;  3MPJ A;  4Q5B A;  2ZAF A;  3D9G A;  1FS8 A;  4L1F A;  1FS7 A;  2YYK A;  3SXQ A;  3MPI A;  3MDE A;  1EGC A;  2YYI A;  1UDY A;  4L3Z A;  2JIF A;  2PG0 A;  2D29 A;  3B96 A;  3F29 A;  4O5M A;  3L1T A;  4M9A A;  1IS2 A;  3D9F A;  2EBA A;  4Q0T A;  1RX0 A;  5K3G A;  3UBR A;  2E80 A;  4IV6 A;  1T9G A;  2DDH A;  3AFE A;  4W9U A;  3BNF A;  3MXL A;  4ZXV A;  2ZO5 A;  4KTO A;  3MDD A;  3SF6 A;  3TTB A;  3TOR A;  3FCJ A;  2YYJ A;  1UKW A;  4KCF A;  5K3I A;  2JBS A;  2RDZ A;  3MMO A;  3R7K A;  1U8V A;  2OT4 A;  2CX9 A;  2REH A;  3D9E A;  3NF4 A;  3UU9 A;  3PFD A;  4Q1O A;  3SWO A;  2YYG A;  4X28 C;  3II9 A;  2VIG A;  1FS9 A;  4IRN A;  1BUC A;  3EON A;  3GM6 A;  1SIQ A;  4WJY A;  3X0Y A;  2RF7 A;  4L3X A;  2C12 A;  3OIB A;  2YYL A;  3HWC A;  2C0U A;  4RM7 A;  3BNH A;  4L38 A;  3OWM A;  2JBR A;  1IVH A;  3D6B A;  4DOY A;  4NXL A;  1QDB A;  2R0N A;  1SIR A;  4Q17 A;  4ZYJ A;  2E81 A;  2Z1Q A;  3LG1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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