5K3HA

Crystals structure of acyl-coa oxidase-1 in caenorhabditis elegans, apo form-ii
Total Genus 263
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
263
sequence length
668
structure length
634
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIKPYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERVLDLHALTSGLKSVVTHQTGEGIEARMACGGHGYSMASYISEIYGVAIGGNMVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Acyl-coenzyme A oxidase
publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
molecule tags Oxidoreductase
total genus 263
structure length 634
sequence length 668
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3hA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3hA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3hA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3hA02
3AFEA 3D9DA 3MPJA 4WJYA 1FS7A 2J7AA 3D9EA 1SIRA 1T9GA 2JBTA 2ZAFA 4ZXVA 2A1TA 1UDYA 2R0NA 5K3IA 2RDZA 4X28C 1IS2A 4O5MA 4DOYA 3D1IA 4Q4UA 3P4TA 3HWCA 4M9AA 4OO2A 3GM6A 3OWAA 4IV6A 2RF7A 4ZYJA 4L3XA 2FONA 3PFDA 3MDDA 3MKHA 2YYIA 2UXWA 4KTOA 3OWMA 3AFFA 2YYGA 3R7KA 4XVXA 4L3YA 1EGEA 2DDHA 4RM7A 3EONA 4P13A 1RX0A 2C12A 3X0XA 2E80A 4X28A 3SXQA 2R0MA 4N5FA 4NXLA 4KCFA 1GU6A 2YYLA 4JEKA 3OIBA 4Q1OA 3LGQA 1UKWA 2YYMA 4Q0TA 4L1FA 3MPIA 4Q5CA 1W07A 1OAHA 3TORA 3F29A 1EGDA 2JIFA 2OT4A 1JQIA 2JBRA 1BUCA 3BNHA 3LG1A 3II9A 1IVHA 2REHA 1WS9A 3SCEA 2VR0A 4Q5BA 2IX5A 5K3HA 1SIQA 3L1TA 4Q17A 3X0YA 3FCJA 3BNJA 3MXLA 2EBAA 2VIGA 3M9VA 3RKHA 4L3ZA 4HR3A 3S7WA 3UBRA 2JBSA 4G5EA 2PG0A 3NF4A 2YYJA 2OR0A 1FS8A 5K3JA 3B96A 3GQTA 2RFQA 1FS9A 3SWOA 3D6BA 3MDEA 3GNCA 3BNGA 3EOMA 4U83A 3UU9A 2Z1QA 1EGCA 2C0UA 3D9GA 3MMOA 2D29A 2CX9A 4IRNA 3SF6A 5K3GA 2DVLA 3TTBA 3BNFA 4L38A 4W9UA 2WBIA 1R2JA 1QDBA 1U8VA 2YYKA 2ZO5A 3FO3A 2IX6A 2E81A 3D9FA
chains in the Genus database with same CATH superfamily
4FF3A 3AFEA 2CJ4A 2YGWA 3D9DA 2CJ6A 5GJWE 2Q8GA 3MPJA 4WJYA 5M4KA 1FS7A 2J7AA 3D9EA 1SIRA 5EZ3A 1T9GA 2JBTA 2ZAFA 4ZXVA 2BU7A 2BU5A 4MP7A 2XQRB 4FF2A 2A1TA 5BRMA 4P79A 1UDYA 2BTZA 2R0NA 5K3IA 2Q8HA 1SK6A 2RDZA 4X28C 5M4NA 1IS2A 4O5MA 4DOYA 1RJ1A 1RP3A 3P4TA 3D1IA 4M9AA 3HWCA 4OO2A 3GM6A 3OWAA 4IV6A 2RF7A 4ZYJA 4L3XA 2FONA 3PFDA 3Q0AA 3MDDA 3TZ0A 4DZYA 3Q23A 4FF1A 3MKHA 2ZDXA 4V25A 4MPEA 2YYIA 2UXWA 4AKIA 4KTOA 3OWMA 4KSAA 4H85A 3AFFA 2XS1A 2YYGA 3R7KA 4XVXA 1X90A 1EGEA 4FZ4A 2DDHA 4RM7A 4L3YA 2ZKJA 1SC5A 1XFUA 4J1VA 3EONA 2Q8IA 1PK0A 2GBBA 4P13A 1RX0A 2BU2A 2C12A 3X0XA 1S26A 1X91A 2E80A 4MP2A 4X28A 5B5VA 3SXQA 4AI6A 2R0MA 4N5FA 4NXLA 4KCFA 1GU6A 2YYLA 4JEKA 3TZ2A 3OIBA 4Q1OA 2CJ7A 4QICA 3LGQA 1UKWA 2YYMA 4Q0TA 4L1FA 2ZDYA 1K93A 3MPIA 4E02A 4Q5CA 1W07A 1OAHA 3TORA 4LQSB 3Q22A 3F29A 1EGDA 2JIFA 2F6LA 2LFWA 2OT4A 1JQIA 2JBRA 2AO2A 1Y8PA 3CE2A 4HKSA 1BUCA 3U33A 3BNHA 4Q4UA 2EC5A 3LG1A 3TZ4A 4V26A 2R03A 3II9A 3VKHA 1IVHA 2REHA 1GKZA 1WS9A 2EBFX 1JM6A 3KMLA 3DJLA 1RJ4A 1XG2B 3SCEA 2OJQA 2OEVA 2VR0A 4Q5BA 2IX5A 5K3HA 1SIQA 5M4PA 3L1TA 3TZ5A 1K90A 4Q17A 3X0YA 4LQQB 3FCJA 2XS8A 3BNJA 3MXLA 2EBAA 2VIGA 3M9VA 3N0RA 4H81A 3RKHA 2CJ5A 4HR3A 4L3ZA 4MPCA 3S7WA 4FF4A 4HKRA 2VF1A 1Y8NA 2QR4A 2AZEA 3UBRA 2JBSA 4G5EA 5J6AA 4G97A 2PNRA 2BU8A 2PG0A 3NF4A 3D2RA 4JIOA 4KS9A 2YYJA 2OR0A 2Q8FA 4E00A 1FS8A 1PI1A 1X8ZA 5K3JA 3B96A 3GQTA 3CRLA 3CRKA 2EBHX 2RFQA 1FS9A 3SWOA 4AKGA 2CJ8A 4KSFA 2PO4A 3D6BA 4AKHA 3MDEA 3GNCA 3BNGA 4H7QA 3C2PA 2OEXA 3EOMA 4U83A 3X29A 3UU9A 2Z1QA 1EGCA 2FP1A 2C0UA 4E01A 5B5WA 3D9GA 5J71A 3C3LA 4F0XA 3C46A 1K8TA 3MMOA 2D29A 5GJVE 2CX9A 5M4MA 4IRNA 3SF6A 1XFXA 1GJVA 5K3GA 1Y8OA 2DVLA 2BU6A 2E0AA 2HJNA 3TTBA 2FP2A 3BNFA 2R02A 4L38A 4W9UA 1XFWA 2WBIA 1Y0VA 2R05A 3VADA 1R2JA 3Q24A 1XFVA 1QDBA 1R3BA 5B6BA 1XFYA 1U8VA 2YYKA 2ZO5A 1LVCA 4JIZA 3FO3A 4MPNA 3VKGA 2IX6A 2E81A 3D9FA 5BRKA 1XFZA 1GKXA
chains in the Genus database with same CATH topology
3AFEA 3D9DA 3MPJA 4WJYA 1FS7A 2J7AA 3D9EA 1SIRA 1T9GA 2JBTA 2ZAFA 4ZXVA 2A1TA 1UDYA 2R0NA 5K3IA 2RDZA 4X28C 1IS2A 4O5MA 4DOYA 3D1IA 4Q4UA 3P4TA 3HWCA 4M9AA 4OO2A 3GM6A 3OWAA 4IV6A 2RF7A 4ZYJA 4L3XA 2FONA 3PFDA 3MDDA 3MKHA 2YYIA 2UXWA 4KTOA 3OWMA 3AFFA 2YYGA 3R7KA 4XVXA 4L3YA 1EGEA 2DDHA 4RM7A 3EONA 4P13A 1RX0A 2C12A 3X0XA 2E80A 4X28A 3SXQA 2R0MA 4N5FA 4NXLA 4KCFA 1GU6A 2YYLA 4JEKA 3OIBA 4Q1OA 3LGQA 1UKWA 2YYMA 4Q0TA 4L1FA 3MPIA 4Q5CA 1W07A 1OAHA 3TORA 3F29A 1EGDA 2JIFA 2OT4A 1JQIA 2JBRA 1BUCA 3BNHA 3LG1A 3II9A 1IVHA 2REHA 1WS9A 3SCEA 2VR0A 4Q5BA 2IX5A 5K3HA 1SIQA 3L1TA 4Q17A 3X0YA 3FCJA 3BNJA 3MXLA 2EBAA 2VIGA 3M9VA 3RKHA 4L3ZA 4HR3A 3S7WA 3UBRA 2JBSA 4G5EA 2PG0A 3NF4A 2YYJA 2OR0A 1FS8A 5K3JA 3B96A 3GQTA 2RFQA 1FS9A 3SWOA 3D6BA 3MDEA 3GNCA 3BNGA 3EOMA 4U83A 3UU9A 2Z1QA 1EGCA 2C0UA 3D9GA 3MMOA 2D29A 2CX9A 4IRNA 3SF6A 5K3GA 2DVLA 3TTBA 3BNFA 4L38A 4W9UA 2WBIA 1R2JA 1QDBA 1U8VA 2YYKA 2ZO5A 3FO3A 2IX6A 2E81A 3D9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AFE A;  3D9D A;  3MPJ A;  4WJY A;  1FS7 A;  2J7A A;  3D9E A;  1SIR A;  1T9G A;  2JBT A;  2ZAF A;  4ZXV A;  2A1T A;  1UDY A;  2R0N A;  5K3I A;  2RDZ A;  4X28 C;  1IS2 A;  4O5M A;  4DOY A;  3D1I A;  4Q4U A;  3P4T A;  3HWC A;  4M9A A;  4OO2 A;  3GM6 A;  3OWA A;  4IV6 A;  2RF7 A;  4ZYJ A;  4L3X A;  2FON A;  3PFD A;  3MDD A;  3MKH A;  2YYI A;  2UXW A;  4KTO A;  3OWM A;  3AFF A;  2YYG A;  3R7K A;  4XVX A;  4L3Y A;  1EGE A;  2DDH A;  4RM7 A;  3EON A;  4P13 A;  1RX0 A;  2C12 A;  3X0X A;  2E80 A;  4X28 A;  3SXQ A;  2R0M A;  4N5F A;  4NXL A;  4KCF A;  1GU6 A;  2YYL A;  4JEK A;  3OIB A;  4Q1O A;  3LGQ A;  1UKW A;  2YYM A;  4Q0T A;  4L1F A;  3MPI A;  4Q5C A;  1W07 A;  1OAH A;  3TOR A;  3F29 A;  1EGD A;  2JIF A;  2OT4 A;  1JQI A;  2JBR A;  1BUC A;  3BNH A;  3LG1 A;  3II9 A;  1IVH A;  2REH A;  1WS9 A;  3SCE A;  2VR0 A;  4Q5B A;  2IX5 A;  5K3H A;  1SIQ A;  3L1T A;  4Q17 A;  3X0Y A;  3FCJ A;  3BNJ A;  3MXL A;  2EBA A;  2VIG A;  3M9V A;  3RKH A;  4L3Z A;  4HR3 A;  3S7W A;  3UBR A;  2JBS A;  4G5E A;  2PG0 A;  3NF4 A;  2YYJ A;  2OR0 A;  1FS8 A;  5K3J A;  3B96 A;  3GQT A;  2RFQ A;  1FS9 A;  3SWO A;  3D6B A;  3MDE A;  3GNC A;  3BNG A;  3EOM A;  4U83 A;  3UU9 A;  2Z1Q A;  1EGC A;  2C0U A;  3D9G A;  3MMO A;  2D29 A;  2CX9 A;  4IRN A;  3SF6 A;  5K3G A;  2DVL A;  3TTB A;  3BNF A;  4L38 A;  4W9U A;  2WBI A;  1R2J A;  1QDB A;  1U8V A;  2YYK A;  2ZO5 A;  3FO3 A;  2IX6 A;  2E81 A;  3D9F A; 
#chains in the Genus database with same CATH topology
 4FF3 A;  3AFE A;  2CJ4 A;  2YGW A;  3D9D A;  2CJ6 A;  5GJW E;  2Q8G A;  3MPJ A;  4WJY A;  5M4K A;  1FS7 A;  2J7A A;  3D9E A;  1SIR A;  5EZ3 A;  1T9G A;  2JBT A;  2ZAF A;  4ZXV A;  2BU7 A;  2BU5 A;  4MP7 A;  2XQR B;  4FF2 A;  2A1T A;  5BRM A;  4P79 A;  1UDY A;  2BTZ A;  2R0N A;  5K3I A;  2Q8H A;  1SK6 A;  2RDZ A;  4X28 C;  5M4N A;  1IS2 A;  4O5M A;  4DOY A;  1RJ1 A;  1RP3 A;  3P4T A;  3D1I A;  4M9A A;  3HWC A;  4OO2 A;  3GM6 A;  3OWA A;  4IV6 A;  2RF7 A;  4ZYJ A;  4L3X A;  2FON A;  3PFD A;  3Q0A A;  3MDD A;  3TZ0 A;  4DZY A;  3Q23 A;  4FF1 A;  3MKH A;  2ZDX A;  4V25 A;  4MPE A;  2YYI A;  2UXW A;  4AKI A;  4KTO A;  3OWM A;  4KSA A;  4H85 A;  3AFF A;  2XS1 A;  2YYG A;  3R7K A;  4XVX A;  1X90 A;  1EGE A;  4FZ4 A;  2DDH A;  4RM7 A;  4L3Y A;  2ZKJ A;  1SC5 A;  1XFU A;  4J1V A;  3EON A;  2Q8I A;  1PK0 A;  2GBB A;  4P13 A;  1RX0 A;  2BU2 A;  2C12 A;  3X0X A;  1S26 A;  1X91 A;  2E80 A;  4MP2 A;  4X28 A;  5B5V A;  3SXQ A;  4AI6 A;  2R0M A;  4N5F A;  4NXL A;  4KCF A;  1GU6 A;  2YYL A;  4JEK A;  3TZ2 A;  3OIB A;  4Q1O A;  2CJ7 A;  4QIC A;  3LGQ A;  1UKW A;  2YYM A;  4Q0T A;  4L1F A;  2ZDY A;  1K93 A;  3MPI A;  4E02 A;  4Q5C A;  1W07 A;  1OAH A;  3TOR A;  4LQS B;  3Q22 A;  3F29 A;  1EGD A;  2JIF A;  2F6L A;  2LFW A;  2OT4 A;  1JQI A;  2JBR A;  2AO2 A;  1Y8P A;  3CE2 A;  4HKS A;  1BUC A;  3U33 A;  3BNH A;  4Q4U A;  2EC5 A;  3LG1 A;  3TZ4 A;  4V26 A;  2R03 A;  3II9 A;  3VKH A;  1IVH A;  2REH A;  1GKZ A;  1WS9 A;  2EBF X;  1JM6 A;  3KML A;  3DJL A;  1RJ4 A;  1XG2 B;  3SCE A;  2OJQ A;  2OEV A;  2VR0 A;  4Q5B A;  2IX5 A;  5K3H A;  1SIQ A;  5M4P A;  3L1T A;  3TZ5 A;  1K90 A;  4Q17 A;  3X0Y A;  4LQQ B;  3FCJ A;  2XS8 A;  3BNJ A;  3MXL A;  2EBA A;  2VIG A;  3M9V A;  3N0R A;  4H81 A;  3RKH A;  2CJ5 A;  4HR3 A;  4L3Z A;  4MPC A;  3S7W A;  4FF4 A;  4HKR A;  2VF1 A;  1Y8N A;  2QR4 A;  2AZE A;  3UBR A;  2JBS A;  4G5E A;  5J6A A;  4G97 A;  2PNR A;  2BU8 A;  2PG0 A;  3NF4 A;  3D2R A;  4JIO A;  4KS9 A;  2YYJ A;  2OR0 A;  2Q8F A;  4E00 A;  1FS8 A;  1PI1 A;  1X8Z A;  5K3J A;  3B96 A;  3GQT A;  3CRL A;  3CRK A;  2EBH X;  2RFQ A;  1FS9 A;  3SWO A;  4AKG A;  2CJ8 A;  4KSF A;  2PO4 A;  3D6B A;  4AKH A;  3MDE A;  3GNC A;  3BNG A;  4H7Q A;  3C2P A;  2OEX A;  3EOM A;  4U83 A;  3X29 A;  3UU9 A;  2Z1Q A;  1EGC A;  2FP1 A;  2C0U A;  4E01 A;  5B5W A;  3D9G A;  5J71 A;  3C3L A;  4F0X A;  3C46 A;  1K8T A;  3MMO A;  2D29 A;  5GJV E;  2CX9 A;  5M4M A;  4IRN A;  3SF6 A;  1XFX A;  1GJV A;  5K3G A;  1Y8O A;  2DVL A;  2BU6 A;  2E0A A;  2HJN A;  3TTB A;  2FP2 A;  3BNF A;  2R02 A;  4L38 A;  4W9U A;  1XFW A;  2WBI A;  1Y0V A;  2R05 A;  3VAD A;  1R2J A;  3Q24 A;  1XFV A;  1QDB A;  1R3B A;  5B6B A;  1XFY A;  1U8V A;  2YYK A;  2ZO5 A;  1LVC A;  4JIZ A;  3FO3 A;  4MPN A;  3VKG A;  2IX6 A;  2E81 A;  3D9F A;  5BRK A;  1XFZ A;  1GKX A; 
#chains in the Genus database with same CATH homology
 3AFE A;  3D9D A;  3MPJ A;  4WJY A;  1FS7 A;  2J7A A;  3D9E A;  1SIR A;  1T9G A;  2JBT A;  2ZAF A;  4ZXV A;  2A1T A;  1UDY A;  2R0N A;  5K3I A;  2RDZ A;  4X28 C;  1IS2 A;  4O5M A;  4DOY A;  3D1I A;  4Q4U A;  3P4T A;  3HWC A;  4M9A A;  4OO2 A;  3GM6 A;  3OWA A;  4IV6 A;  2RF7 A;  4ZYJ A;  4L3X A;  2FON A;  3PFD A;  3MDD A;  3MKH A;  2YYI A;  2UXW A;  4KTO A;  3OWM A;  3AFF A;  2YYG A;  3R7K A;  4XVX A;  4L3Y A;  1EGE A;  2DDH A;  4RM7 A;  3EON A;  4P13 A;  1RX0 A;  2C12 A;  3X0X A;  2E80 A;  4X28 A;  3SXQ A;  2R0M A;  4N5F A;  4NXL A;  4KCF A;  1GU6 A;  2YYL A;  4JEK A;  3OIB A;  4Q1O A;  3LGQ A;  1UKW A;  2YYM A;  4Q0T A;  4L1F A;  3MPI A;  4Q5C A;  1W07 A;  1OAH A;  3TOR A;  3F29 A;  1EGD A;  2JIF A;  2OT4 A;  1JQI A;  2JBR A;  1BUC A;  3BNH A;  3LG1 A;  3II9 A;  1IVH A;  2REH A;  1WS9 A;  3SCE A;  2VR0 A;  4Q5B A;  2IX5 A;  5K3H A;  1SIQ A;  3L1T A;  4Q17 A;  3X0Y A;  3FCJ A;  3BNJ A;  3MXL A;  2EBA A;  2VIG A;  3M9V A;  3RKH A;  4L3Z A;  4HR3 A;  3S7W A;  3UBR A;  2JBS A;  4G5E A;  2PG0 A;  3NF4 A;  2YYJ A;  2OR0 A;  1FS8 A;  5K3J A;  3B96 A;  3GQT A;  2RFQ A;  1FS9 A;  3SWO A;  3D6B A;  3MDE A;  3GNC A;  3BNG A;  3EOM A;  4U83 A;  3UU9 A;  2Z1Q A;  1EGC A;  2C0U A;  3D9G A;  3MMO A;  2D29 A;  2CX9 A;  4IRN A;  3SF6 A;  5K3G A;  2DVL A;  3TTB A;  3BNF A;  4L38 A;  4W9U A;  2WBI A;  1R2J A;  1QDB A;  1U8V A;  2YYK A;  2ZO5 A;  3FO3 A;  2IX6 A;  2E81 A;  3D9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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