The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
275
|
sequence length |
893
|
structure length |
886
|
Chain Sequence |
KKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQLGYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDYSSQYSEMWWEGPDQTKIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDITKAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSARVYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDEVHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVEVEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQPYMAKYLTVELSVKEMAPFSWDSFALIQGETKAFEGSLLAQPATNEMENEFIQVKIENNGSLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLPVAADERLEEEQKAVREFRERLAQRSTTLRPFEITTMVTMIKESNQLFFETTINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDTWENPTNPQHQQAFVNVHDQNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLHGKPEERFATYQQAYSAQIPFTAATTARHEGKLAPNHVYLTHAEGPIGWTAVKRQEQTNHLVVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEVDAPLRPFEIRTWRFE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
The crystal structure of an alpha-mannosidase from Enterococcus faecalis V583
rcsb |
molecule keywords |
Glycosyl hydrolase, family 38
|
molecule tags |
Hydrolase
|
source organism |
Enterococcus faecalis (strain atcc 700802 / v583)
|
total genus |
275
|
structure length |
886
|
sequence length |
893
|
chains with identical sequence |
B
|
ec nomenclature | |
pdb deposition date | 2016-06-03 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF01074 | Glyco_hydro_38N | Glycosyl hydrolases family 38 N-terminal domain |
A | PF07748 | Glyco_hydro_38C | Glycosyl hydrolases family 38 C-terminal domain |
A | PF09261 | Alpha-mann_mid | Alpha mannosidase middle domain |
A | PF17677 | Glyco_hydro38C2 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain |
A | PF18438 | Glyco_hydro_38 | Glycosyl hydrolases family 38 C-terminal domain 1 |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Glycoside hydrolase family 38, central domain | ||
Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulin-like | ||
Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulin-like | ||
Mainly Beta | Distorted Sandwich | Beta-galactosidase; Chain A, domain 5 | Golgi alpha-mannosidase II; domain 4 | ||
Alpha Beta | Alpha-Beta Barrel | 7-stranded beta/alpha barrel | Glycoside hydrolase 38, N terminal domain |