5KN8A

Muty n-terminal domain in complex with undamaged dna
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
222
structure length
222
Chain Sequence
FPAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
source organism Geobacillus stearothermophilus
publication title Structural Basis for the Lesion-scanning Mechanism of the MutY DNA Glycosylase.
pubmed doi rcsb
molecule keywords Adenine DNA glycosylase
total genus 87
structure length 222
sequence length 222
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2016-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 5kn8A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 5kn8A01
2JG6A 4EW4A 1MUYA 3F0ZA 2NOEA 2ABKA 2YG8A 1WEIA 2JHNA 3CWUA 4UNFA 1LWVA 3N0UA 2H56A 3S6IA 3IH7A 1NKUA 1KG4A 2YG9A 1RRQA 3CWAA 4AI4A 4B23A 3CWSA 1DIZA 3OH9A 5KN8A 4OFEA 1PVSA 3KNTA 2XHIA 4EA5A 1HU0A 5KN9A 1KO9A 2NOZA 3IHOA 1ORNA 3F10A 4EW0A 1YQKA 4YOQA 1KG2A 1P59A 1KG6A 1VRLA 1N3AA 1NGNA 4B22A 4AIAA 1N39A 4EA4A 4DK9A 4YPHA 1YQMA 1LMZA 4EVVA 3D4VA 4EJZA 4B21A 3CW7A 4B24A 1PU7A 1YQLA 1KG7A 2JHJA 3OH6A 1KG3A 1XG7A 4OFHA 4PIIA 3CVTA 5DPKA 1LWYA 3CWTA 1ORPA 4OFAA 2NOHA 2NOLA 1KEAA 4UOBA 3CVSA 5AN4A 5CHZA 4EJYA 3FSPA 1MPGA 1M3QA 1YQRA 3OGDA 3I0WA 4E9HA 4AI5A 2NOBA 4YPRA 4HSBA 3FHGA 3N5NX 1XQPA 1P7MA 1KQJA 4E9EA 1N3CA 1WEFA 4E9GA 3G0QA 2NOIA 1PU8A 3I0XA 4E9FA 1MUNA 1MUDA 1WEGA 2OFKA 1EBMA 2OFIA 1M3HA 1PU6A 3FHFA 1RRSA 1XQOA 1FN7A 2NOFA 1KG5A 2I5WA 3KTUA 1LWWA
chains in the Genus database with same CATH superfamily
2JG6A 4EW4A 1MUYA 3F0ZA 2NOEA 2ABKA 3R2XC 2YG8A 3OYLA 4BE2A 1WEIA 2JHNA 2W03A 3OYEA 3CWUA 4UNFA 1LWVA 3N0UA 2H56A 3S6IA 3IH7A 1NKUA 1KG4A 2YG9A 1RRQA 3CWAA 4AI4A 3OYFA 4B23A 3CWSA 1DIZA 3OH9A 5FRMA 5KN8A 4OFEA 1PVSA 3OYMA 4E7KA 3L2VA 2V75A 3VW4A 3KNTA 4E7JA 2XHIA 4EA5A 3OS1A 3L2WA 4E7IA 1HU0A 5KN9A 3KTUA 1KO9A 2NOZA 3OYCA 3L2RA 3OYKA 3IHOA 3OY9A 1ORNA 3F10A 5FROA 4EW0A 1YQKA 4YOQA 1KG2A 1P59A 1KG6A 1VRLA 1N3AA 4B22A 4AIAA 4BE0A 1N39A 4E7HA 3OYBA 4EA4A 4DK9A 4YPHA 4ZTFA 1YQMA 1LMZA 4EVVA 3D4VA 4EJZA 4B21A 3CW7A 4B24A 1PU7A 1U84A 1YQLA 1KG7A 3OYAA 2JHJA 3OH6A 1KG3A 1XG7A 3OYNA 3S3OA 4IKFA 4OFHA 4NZGA 4PIIA 3CVTA 4BDYA 4BDZA 3OYDA 5DPKA 1LWYA 1ORPA 4OFAA 3CWTA 2NOHA 3NNQA 2NOLA 1KEAA 4UOBA 3CVSA 5AN4A 3OS2A 5CHZA 3OYGA 3S3NA 4ZTJA 4EJYA 3OYIA 3FSPA 1MPGA 1M3QA 1YQRA 3OGDA 2JPSA 3L2QA 3I0WA 4E9HA 4AI5A 2NOBA 5FRNA 4YPRA 4HSBA 3FHGA 3N5NX 1XQPA 3OYHA 1P7MA 1KQJA 3LCNA 4E9EA 3S3MA 1N3CA 1WEFA 4E9GA 3G0QA 4E7LA 2NOIA 2W04A 1PU8A 3I0XA 3L2UA 3OS0A 4E9FA 1MUNA 1MUDA 1WEGA 2OFKA 1EBMA 2OFIA 1M3HA 1PU6A 3FHFA 1RRSA 1XQOA 1FN7A 3OYJA 2NOFA 4BACA 1KG5A 2I5WA 4BE1A 1NGNA 1LWWA
chains in the Genus database with same CATH topology
2JG6A 4EW4A 1MUYA 3F0ZA 2NOEA 2ABKA 2YG8A 1WEIA 2JHNA 3CWUA 4UNFA 1LWVA 3N0UA 2H56A 3S6IA 3IH7A 1NKUA 1KG4A 2YG9A 1RRQA 3CWAA 4AI4A 4B23A 3CWSA 1DIZA 3OH9A 5KN8A 4OFEA 1PVSA 3KNTA 2XHIA 4EA5A 1HU0A 5KN9A 1KO9A 2NOZA 3IHOA 1ORNA 3F10A 4EW0A 1YQKA 4YOQA 1KG2A 1P59A 1KG6A 1VRLA 1N3AA 1NGNA 4B22A 4AIAA 1N39A 4EA4A 4DK9A 4YPHA 1YQMA 1LMZA 4EVVA 3D4VA 4EJZA 4B21A 3CW7A 4B24A 1PU7A 1YQLA 1KG7A 2JHJA 3OH6A 1KG3A 1XG7A 4OFHA 4PIIA 3CVTA 5DPKA 1LWYA 3CWTA 1ORPA 4OFAA 2NOHA 2NOLA 1KEAA 4UOBA 3CVSA 5AN4A 5CHZA 4EJYA 3FSPA 1MPGA 1M3QA 1YQRA 3OGDA 3I0WA 4E9HA 4AI5A 2NOBA 4YPRA 4HSBA 3FHGA 3N5NX 1XQPA 1P7MA 1KQJA 4E9EA 1N3CA 1WEFA 4E9GA 3G0QA 2NOIA 1PU8A 3I0XA 4E9FA 1MUNA 1MUDA 1WEGA 2OFKA 1EBMA 2OFIA 1M3HA 1PU6A 3FHFA 1RRSA 1XQOA 1FN7A 2NOFA 1KG5A 2I5WA 3KTUA 1LWWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JG6 A;  4EW4 A;  1MUY A;  3F0Z A;  2NOE A;  2ABK A;  2YG8 A;  1WEI A;  2JHN A;  3CWU A;  4UNF A;  1LWV A;  3N0U A;  2H56 A;  3S6I A;  3IH7 A;  1NKU A;  1KG4 A;  2YG9 A;  1RRQ A;  3CWA A;  4AI4 A;  4B23 A;  3CWS A;  1DIZ A;  3OH9 A;  5KN8 A;  4OFE A;  1PVS A;  3KNT A;  2XHI A;  4EA5 A;  1HU0 A;  5KN9 A;  1KO9 A;  2NOZ A;  3IHO A;  1ORN A;  3F10 A;  4EW0 A;  1YQK A;  4YOQ A;  1KG2 A;  1P59 A;  1KG6 A;  1VRL A;  1N3A A;  1NGN A;  4B22 A;  4AIA A;  1N39 A;  4EA4 A;  4DK9 A;  4YPH A;  1YQM A;  1LMZ A;  4EVV A;  3D4V A;  4EJZ A;  4B21 A;  3CW7 A;  4B24 A;  1PU7 A;  1YQL A;  1KG7 A;  2JHJ A;  3OH6 A;  1KG3 A;  1XG7 A;  4OFH A;  4PII A;  3CVT A;  5DPK A;  1LWY A;  3CWT A;  1ORP A;  4OFA A;  2NOH A;  2NOL A;  1KEA A;  4UOB A;  3CVS A;  5AN4 A;  5CHZ A;  4EJY A;  3FSP A;  1MPG A;  1M3Q A;  1YQR A;  3OGD A;  3I0W A;  4E9H A;  4AI5 A;  2NOB A;  4YPR A;  4HSB A;  3FHG A;  3N5N X;  1XQP A;  1P7M A;  1KQJ A;  4E9E A;  1N3C A;  1WEF A;  4E9G A;  3G0Q A;  2NOI A;  1PU8 A;  3I0X A;  4E9F A;  1MUN A;  1MUD A;  1WEG A;  2OFK A;  1EBM A;  2OFI A;  1M3H A;  1PU6 A;  3FHF A;  1RRS A;  1XQO A;  1FN7 A;  2NOF A;  1KG5 A;  2I5W A;  3KTU A;  1LWW A; 
#chains in the Genus database with same CATH topology
 2JG6 A;  4EW4 A;  1MUY A;  3F0Z A;  2NOE A;  2ABK A;  3R2X C;  2YG8 A;  3OYL A;  4BE2 A;  1WEI A;  2JHN A;  2W03 A;  3OYE A;  3CWU A;  4UNF A;  1LWV A;  3N0U A;  2H56 A;  3S6I A;  3IH7 A;  1NKU A;  1KG4 A;  2YG9 A;  1RRQ A;  3CWA A;  4AI4 A;  3OYF A;  4B23 A;  3CWS A;  1DIZ A;  3OH9 A;  5FRM A;  5KN8 A;  4OFE A;  1PVS A;  3OYM A;  4E7K A;  3L2V A;  2V75 A;  3VW4 A;  3KNT A;  4E7J A;  2XHI A;  4EA5 A;  3OS1 A;  3L2W A;  4E7I A;  1HU0 A;  5KN9 A;  3KTU A;  1KO9 A;  2NOZ A;  3OYC A;  3L2R A;  3OYK A;  3IHO A;  3OY9 A;  1ORN A;  3F10 A;  5FRO A;  4EW0 A;  1YQK A;  4YOQ A;  1KG2 A;  1P59 A;  1KG6 A;  1VRL A;  1N3A A;  4B22 A;  4AIA A;  4BE0 A;  1N39 A;  4E7H A;  3OYB A;  4EA4 A;  4DK9 A;  4YPH A;  4ZTF A;  1YQM A;  1LMZ A;  4EVV A;  3D4V A;  4EJZ A;  4B21 A;  3CW7 A;  4B24 A;  1PU7 A;  1U84 A;  1YQL A;  1KG7 A;  3OYA A;  2JHJ A;  3OH6 A;  1KG3 A;  1XG7 A;  3OYN A;  3S3O A;  4IKF A;  4OFH A;  4NZG A;  4PII A;  3CVT A;  4BDY A;  4BDZ A;  3OYD A;  5DPK A;  1LWY A;  1ORP A;  4OFA A;  3CWT A;  2NOH A;  3NNQ A;  2NOL A;  1KEA A;  4UOB A;  3CVS A;  5AN4 A;  3OS2 A;  5CHZ A;  3OYG A;  3S3N A;  4ZTJ A;  4EJY A;  3OYI A;  3FSP A;  1MPG A;  1M3Q A;  1YQR A;  3OGD A;  2JPS A;  3L2Q A;  3I0W A;  4E9H A;  4AI5 A;  2NOB A;  5FRN A;  4YPR A;  4HSB A;  3FHG A;  3N5N X;  1XQP A;  3OYH A;  1P7M A;  1KQJ A;  3LCN A;  4E9E A;  3S3M A;  1N3C A;  1WEF A;  4E9G A;  3G0Q A;  4E7L A;  2NOI A;  2W04 A;  1PU8 A;  3I0X A;  3L2U A;  3OS0 A;  4E9F A;  1MUN A;  1MUD A;  1WEG A;  2OFK A;  1EBM A;  2OFI A;  1M3H A;  1PU6 A;  3FHF A;  1RRS A;  1XQO A;  1FN7 A;  3OYJ A;  2NOF A;  4BAC A;  1KG5 A;  2I5W A;  4BE1 A;  1NGN A;  1LWW A; 
#chains in the Genus database with same CATH homology
 2JG6 A;  4EW4 A;  1MUY A;  3F0Z A;  2NOE A;  2ABK A;  2YG8 A;  1WEI A;  2JHN A;  3CWU A;  4UNF A;  1LWV A;  3N0U A;  2H56 A;  3S6I A;  3IH7 A;  1NKU A;  1KG4 A;  2YG9 A;  1RRQ A;  3CWA A;  4AI4 A;  4B23 A;  3CWS A;  1DIZ A;  3OH9 A;  5KN8 A;  4OFE A;  1PVS A;  3KNT A;  2XHI A;  4EA5 A;  1HU0 A;  5KN9 A;  1KO9 A;  2NOZ A;  3IHO A;  1ORN A;  3F10 A;  4EW0 A;  1YQK A;  4YOQ A;  1KG2 A;  1P59 A;  1KG6 A;  1VRL A;  1N3A A;  1NGN A;  4B22 A;  4AIA A;  1N39 A;  4EA4 A;  4DK9 A;  4YPH A;  1YQM A;  1LMZ A;  4EVV A;  3D4V A;  4EJZ A;  4B21 A;  3CW7 A;  4B24 A;  1PU7 A;  1YQL A;  1KG7 A;  2JHJ A;  3OH6 A;  1KG3 A;  1XG7 A;  4OFH A;  4PII A;  3CVT A;  5DPK A;  1LWY A;  3CWT A;  1ORP A;  4OFA A;  2NOH A;  2NOL A;  1KEA A;  4UOB A;  3CVS A;  5AN4 A;  5CHZ A;  4EJY A;  3FSP A;  1MPG A;  1M3Q A;  1YQR A;  3OGD A;  3I0W A;  4E9H A;  4AI5 A;  2NOB A;  4YPR A;  4HSB A;  3FHG A;  3N5N X;  1XQP A;  1P7M A;  1KQJ A;  4E9E A;  1N3C A;  1WEF A;  4E9G A;  3G0Q A;  2NOI A;  1PU8 A;  3I0X A;  4E9F A;  1MUN A;  1MUD A;  1WEG A;  2OFK A;  1EBM A;  2OFI A;  1M3H A;  1PU6 A;  3FHF A;  1RRS A;  1XQO A;  1FN7 A;  2NOF A;  1KG5 A;  2I5W A;  3KTU A;  1LWW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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