5KRDA

Crystal structure of haliscomenobacter hydrossis iodotyrosine deiodinase (iyd) bound to fmn and 2-iodophenol (2ip)
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
218
structure length
200
Chain Sequence
AFIPYAGAQFEPEEMLSKSAEYYQFMDHRRTVREFSNRAIPLEVIENIVMTASTAPSGAHKQPWTFVVVSDPQIKAKIRQAAEKEEFESDWHKPFLEIAPYLIVVFRKAYDVLPDGTQRKNYYVQESVGIACGFLLAAIHQAGLVALTHTPSPMNFLQKILQRPENERPFLLVPVGYPAEGAMVPDLQRKDKAAVMVVYH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Nitroreductase
publication title Active Site Binding Is Not Sufficient for Reductive Deiodination by Iodotyrosine Deiodinase.
pubmed doi rcsb
source organism Haliscomenobacter hydrossis (strain atcc 27775 / dsm 1100 / lmg 10767 / o)
total genus 52
structure length 200
sequence length 218
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 5krdA00
3TNZA 3GR3A 1YLRA 3GE5A 1DS7A 3GH8A 1YLUA 4BN7A 1YKIA 2B67A 1ICRA 3E10A 3GB5A 1OO5A 1F5VA 2ISJA 1OOQA 3EO7A 4G8SA 4QLXA 2WZVA 2I7HA 5KO7A 4BN8A 2IFAA 4TTCA 2YMVA 4BN6A 1NOXA 1OO6A 3EO8A 3N2SA 2HAYA 3BM2A 1KQBA 1ICVA 3GE6A 2WQFA 3EOFA 4EO3A 3G14A 3HOIA 1V5YA 5HEIA 3X22A 5KRDA 3HZNA 1ICUA 1IDTA 3BEMA 2WZWA 4DN2A 4QLYA 4XOQA 5KO8A 3H4OA 3GBHA 1NECA 4XOOA 2H0UA 2BKJA 1V5ZA 3OF4A 1KQDA 1YWQA 4BN9A 2ISKA 1ZCHA 3KWKA 3BM1A 4XOMA 3M5KA 3KOQA 3K6HA 4TTBA 1BKJA 3GFAA 1OONA 3GAGA 3PXVA 3GFDA 4URPA 5J6CA 2ISLA 4BNBA 3QDLA 3X21A 2FREA 2R01A 5HDJA 3HJ9A 1KQCA 3E39A 3TO0A 1VFRA 3EK3A 1VKWA
chains in the Genus database with same CATH superfamily
3TNZA 3GR3A 1YLRA 3GE5A 1DS7A 3GH8A 1YLUA 4BN7A 1YKIA 2B67A 1ICRA 3E10A 3GB5A 1OO5A 1F5VA 2ISJA 1OOQA 3EO7A 4G8SA 4QLXA 2WZVA 2I7HA 5KO7A 4BN8A 2IFAA 4TTCA 2YMVA 4BN6A 1NOXA 1OO6A 3EO8A 3N2SA 2HAYA 3BM2A 1KQBA 1ICVA 3GE6A 2WQFA 3EOFA 4EO3A 3G14A 3HOIA 1V5YA 5HEIA 3X22A 5KRDA 3HZNA 1ICUA 1IDTA 3BEMA 2WZWA 4DN2A 4QLYA 4XOQA 5KO8A 3H4OA 3GBHA 1NECA 4XOOA 2H0UA 2BKJA 1V5ZA 3OF4A 1KQDA 1YWQA 4BN9A 2ISKA 1ZCHA 3KWKA 3BM1A 4XOMA 3M5KA 3KOQA 3K6HA 4TTBA 1BKJA 3GFAA 1OONA 3GAGA 3PXVA 3GFDA 4URPA 5J6CA 2ISLA 4BNBA 3QDLA 3X21A 2FREA 2R01A 5HDJA 3HJ9A 1KQCA 3E39A 1J6RA 3TO0A 1VFRA 3EK3A 1VKWA
chains in the Genus database with same CATH topology
3TNZA 3GR3A 1YLRA 3GE5A 1DS7A 3GH8A 1YLUA 4BN7A 1YKIA 2B67A 1ICRA 3E10A 3GB5A 1OO5A 1F5VA 2ISJA 1OOQA 3EO7A 4G8SA 4QLXA 2WZVA 2I7HA 5KO7A 4BN8A 2IFAA 4TTCA 2YMVA 4BN6A 1NOXA 1OO6A 3EO8A 3N2SA 2HAYA 3BM2A 1KQBA 1ICVA 3GE6A 2WQFA 3EOFA 4EO3A 3G14A 3HOIA 1V5YA 5HEIA 3X22A 5KRDA 3HZNA 1ICUA 1IDTA 3BEMA 2WZWA 4DN2A 4QLYA 4XOQA 5KO8A 3H4OA 3GBHA 1NECA 4XOOA 2H0UA 2BKJA 1V5ZA 3OF4A 1KQDA 1YWQA 4BN9A 2ISKA 1ZCHA 3KWKA 3BM1A 4XOMA 3M5KA 3KOQA 3K6HA 4TTBA 1BKJA 3GFAA 1OONA 3GAGA 3PXVA 3GFDA 4URPA 5J6CA 2ISLA 4BNBA 3QDLA 3X21A 2FREA 2R01A 5HDJA 3HJ9A 1KQCA 3E39A 1J6RA 3TO0A 1VFRA 3EK3A 1VKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TNZ A;  3GR3 A;  1YLR A;  3GE5 A;  1DS7 A;  3GH8 A;  1YLU A;  4BN7 A;  1YKI A;  2B67 A;  1ICR A;  3E10 A;  3GB5 A;  1OO5 A;  1F5V A;  2ISJ A;  1OOQ A;  3EO7 A;  4G8S A;  4QLX A;  2WZV A;  2I7H A;  5KO7 A;  4BN8 A;  2IFA A;  4TTC A;  2YMV A;  4BN6 A;  1NOX A;  1OO6 A;  3EO8 A;  3N2S A;  2HAY A;  3BM2 A;  1KQB A;  1ICV A;  3GE6 A;  2WQF A;  3EOF A;  4EO3 A;  3G14 A;  3HOI A;  1V5Y A;  5HEI A;  3X22 A;  5KRD A;  3HZN A;  1ICU A;  1IDT A;  3BEM A;  2WZW A;  4DN2 A;  4QLY A;  4XOQ A;  5KO8 A;  3H4O A;  3GBH A;  1NEC A;  4XOO A;  2H0U A;  2BKJ A;  1V5Z A;  3OF4 A;  1KQD A;  1YWQ A;  4BN9 A;  2ISK A;  1ZCH A;  3KWK A;  3BM1 A;  4XOM A;  3M5K A;  3KOQ A;  3K6H A;  4TTB A;  1BKJ A;  3GFA A;  1OON A;  3GAG A;  3PXV A;  3GFD A;  4URP A;  5J6C A;  2ISL A;  4BNB A;  3QDL A;  3X21 A;  2FRE A;  2R01 A;  5HDJ A;  3HJ9 A;  1KQC A;  3E39 A;  3TO0 A;  1VFR A;  3EK3 A;  1VKW A; 
#chains in the Genus database with same CATH topology
 3TNZ A;  3GR3 A;  1YLR A;  3GE5 A;  1DS7 A;  3GH8 A;  1YLU A;  4BN7 A;  1YKI A;  2B67 A;  1ICR A;  3E10 A;  3GB5 A;  1OO5 A;  1F5V A;  2ISJ A;  1OOQ A;  3EO7 A;  4G8S A;  4QLX A;  2WZV A;  2I7H A;  5KO7 A;  4BN8 A;  2IFA A;  4TTC A;  2YMV A;  4BN6 A;  1NOX A;  1OO6 A;  3EO8 A;  3N2S A;  2HAY A;  3BM2 A;  1KQB A;  1ICV A;  3GE6 A;  2WQF A;  3EOF A;  4EO3 A;  3G14 A;  3HOI A;  1V5Y A;  5HEI A;  3X22 A;  5KRD A;  3HZN A;  1ICU A;  1IDT A;  3BEM A;  2WZW A;  4DN2 A;  4QLY A;  4XOQ A;  5KO8 A;  3H4O A;  3GBH A;  1NEC A;  4XOO A;  2H0U A;  2BKJ A;  1V5Z A;  3OF4 A;  1KQD A;  1YWQ A;  4BN9 A;  2ISK A;  1ZCH A;  3KWK A;  3BM1 A;  4XOM A;  3M5K A;  3KOQ A;  3K6H A;  4TTB A;  1BKJ A;  3GFA A;  1OON A;  3GAG A;  3PXV A;  3GFD A;  4URP A;  5J6C A;  2ISL A;  4BNB A;  3QDL A;  3X21 A;  2FRE A;  2R01 A;  5HDJ A;  3HJ9 A;  1KQC A;  3E39 A;  1J6R A;  3TO0 A;  1VFR A;  3EK3 A;  1VKW A; 
#chains in the Genus database with same CATH homology
 3TNZ A;  3GR3 A;  1YLR A;  3GE5 A;  1DS7 A;  3GH8 A;  1YLU A;  4BN7 A;  1YKI A;  2B67 A;  1ICR A;  3E10 A;  3GB5 A;  1OO5 A;  1F5V A;  2ISJ A;  1OOQ A;  3EO7 A;  4G8S A;  4QLX A;  2WZV A;  2I7H A;  5KO7 A;  4BN8 A;  2IFA A;  4TTC A;  2YMV A;  4BN6 A;  1NOX A;  1OO6 A;  3EO8 A;  3N2S A;  2HAY A;  3BM2 A;  1KQB A;  1ICV A;  3GE6 A;  2WQF A;  3EOF A;  4EO3 A;  3G14 A;  3HOI A;  1V5Y A;  5HEI A;  3X22 A;  5KRD A;  3HZN A;  1ICU A;  1IDT A;  3BEM A;  2WZW A;  4DN2 A;  4QLY A;  4XOQ A;  5KO8 A;  3H4O A;  3GBH A;  1NEC A;  4XOO A;  2H0U A;  2BKJ A;  1V5Z A;  3OF4 A;  1KQD A;  1YWQ A;  4BN9 A;  2ISK A;  1ZCH A;  3KWK A;  3BM1 A;  4XOM A;  3M5K A;  3KOQ A;  3K6H A;  4TTB A;  1BKJ A;  3GFA A;  1OON A;  3GAG A;  3PXV A;  3GFD A;  4URP A;  5J6C A;  2ISL A;  4BNB A;  3QDL A;  3X21 A;  2FRE A;  2R01 A;  5HDJ A;  3HJ9 A;  1KQC A;  3E39 A;  1J6R A;  3TO0 A;  1VFR A;  3EK3 A;  1VKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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