5L6FA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylobiose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6fA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6fA02
2Y3RA 2IPIA 3PQBA 3D2JA 5K8EA 1ZR6A 3VTEA 5L6FA 3POPA 4PVKA 2UUUA 5D79A 3W8XA 3RJAA 5I1WA 3D2DA 4XLOA 5AWVA 3W8ZA 4EC3A 2UUVA 3GSYA 3TSHA 5I1VA 4UD8A 4PZFA 2Y3SA 3FW9A 2Y08A 4PVEA 3RJ8A 3FW7A 4PWBA 2BVFA 3D2HA 2BVHA 4PVHA 4PWCA 4PVJA 2AXRA 2WDWA 2BVGA 3FWAA 4DNSA 3FW8A 3HSUA 3TSJA 3W8WA 5L6GA 2Y4GA
chains in the Genus database with same CATH superfamily
3B9JB 1UXYA 3D2JA 3HRDC 1ZR6A 3VTEA 4BBYA 2P3HA 3POPA 2OAIA 4BC9A 2UUUA 3W8XA 2O3GA 4HG0A 1DIQA 1N62C 1N61C 3ETRB 4ML8A 5AE3A 3GSYA 1N5WC 4UD8A 5I1VA 2VAOA 1T3QC 2NQWA 2R2ZA 3D2HA 3DEDA 2BVHA 1W1KA 4PVJA 2AXRA 2WDWA 4DNSA 1E8HA 1V97A 2PLSA 3FW8A 3NVVB 3W8WA 2Y4GA 5G5GB 4BC7A 5AE1A 2I0KA 2P4PA 3PQBA 3LAEA 3S1DA 4BCAA 1I19A 5L6FA 4MLAA 3NVWB 1FFVC 1E8FA 4PVKA 2VFSA 5D79A 5I1WA 3D2DA 1MBBA 5AWVA 2RK5A 3NS1B 1F0XA 2VFUA 2VFRA 1W1RA 3TSHA 2QKNA 4JB1A 1JROA 3FW9A 1DZNA 4PVEA 3FW7A 1E0YA 1E8GA 3KJMA 2GQTA 1WVFA 2GQUA 5AE2A 1N60C 5G5HB 5L6GA 1QLUA 2YVSA 2W3RA 2P13A 3SR6B 1W1JA 1AHUA 3NVZB 3NRZB 5FXPA 3PM9A 3RJAA 4JAYA 1WYGA 2PLIA 4O95A 3AMZA 3NVYB 2QPMA 2VFVA 1FIQB 2UUVA 4EC3A 5HQXA 2R8DA 4PYTA 1ZXIC 3C0PA 4ZOHB 3RJ8A 1FO4A 2VFTA 1VDVA 1FFUC 1N63C 4PWCA 3JS8A 2BVGA 3FWAA 3BW7A 1JRPA 3AM9A 2Q4WA 3HSUA 3S1FA 2Y3RA 2W3SA 2IPIA 5HHZA 2W55A 3EUB3 3TX1A 5ADZA 1W1SA 1DIIA 1WVEA 3I99A 1HSKA 1RM6B 5K8EA 1W1MA 1VAOA 2Q85A 1AHZA 2W54A 4XLOA 1AHVA 3W8ZA 3S1CA 3DQ0A 4OALA 5FXDA 4PZFA 2MBRA 2Y3SA 3LLBA 1W1OA 1MBTA 2Y08A 5HMRA 5FXFA 3AN1A 5FXEA 2EXRA 4PWBA 2BVFA 4PVHA 1SB3B 1W1LA 1N5XA 2E3TA 1QLTA 3TSJA 3S1EA 1W1QA
chains in the Genus database with same CATH topology
3B9JB 1UXYA 3D2JA 3HRDC 1ZR6A 3VTEA 4BBYA 2P3HA 3POPA 2OAIA 4BC9A 2UUUA 3W8XA 2O3GA 4HG0A 1DIQA 1N62C 1N61C 3ETRB 4ML8A 5AE3A 3GSYA 1N5WC 4UD8A 5I1VA 2VAOA 1T3QC 2NQWA 2R2ZA 3D2HA 3DEDA 2BVHA 1W1KA 4PVJA 2AXRA 2WDWA 4DNSA 1E8HA 1V97A 2PLSA 3FW8A 3NVVB 3W8WA 2Y4GA 5G5GB 4BC7A 5AE1A 2I0KA 2P4PA 3PQBA 3LAEA 3S1DA 4BCAA 1I19A 5L6FA 4MLAA 3NVWB 1FFVC 1E8FA 4PVKA 2VFSA 5D79A 5I1WA 3D2DA 1MBBA 5AWVA 2RK5A 3NS1B 1F0XA 2VFUA 2VFRA 1W1RA 3TSHA 2QKNA 4JB1A 1JROA 3FW9A 1DZNA 4PVEA 3FW7A 1E0YA 1E8GA 3KJMA 2GQTA 1WVFA 2GQUA 5AE2A 1N60C 5G5HB 5L6GA 1QLUA 2YVSA 2W3RA 2P13A 3SR6B 1W1JA 1AHUA 3NVZB 3NRZB 5FXPA 3PM9A 3RJAA 4JAYA 1WYGA 2PLIA 4O95A 3AMZA 3NVYB 2QPMA 2VFVA 1FIQB 2UUVA 4EC3A 5HQXA 2R8DA 4PYTA 1ZXIC 3C0PA 4ZOHB 3RJ8A 1FO4A 2VFTA 1VDVA 1FFUC 1N63C 4PWCA 3JS8A 2BVGA 3FWAA 3BW7A 1JRPA 3AM9A 2Q4WA 3HSUA 3S1FA 2Y3RA 2W3SA 2IPIA 5HHZA 2W55A 3EUB3 3TX1A 5ADZA 1W1SA 1DIIA 1WVEA 3I99A 1HSKA 1RM6B 5K8EA 1W1MA 1VAOA 2Q85A 1AHZA 2W54A 4XLOA 1AHVA 3W8ZA 3S1CA 3DQ0A 4OALA 5FXDA 4PZFA 2MBRA 2Y3SA 3LLBA 1W1OA 1MBTA 2Y08A 5HMRA 5FXFA 3AN1A 5FXEA 2EXRA 4PWBA 2BVFA 4PVHA 1SB3B 1W1LA 1N5XA 2E3TA 1QLTA 3TSJA 3S1EA 1W1QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y3R A;  2IPI A;  3PQB A;  3D2J A;  5K8E A;  1ZR6 A;  3VTE A;  5L6F A;  3POP A;  4PVK A;  2UUU A;  5D79 A;  3W8X A;  3RJA A;  5I1W A;  3D2D A;  4XLO A;  5AWV A;  3W8Z A;  4EC3 A;  2UUV A;  3GSY A;  3TSH A;  5I1V A;  4UD8 A;  4PZF A;  2Y3S A;  3FW9 A;  2Y08 A;  4PVE A;  3RJ8 A;  3FW7 A;  4PWB A;  2BVF A;  3D2H A;  2BVH A;  4PVH A;  4PWC A;  4PVJ A;  2AXR A;  2WDW A;  2BVG A;  3FWA A;  4DNS A;  3FW8 A;  3HSU A;  3TSJ A;  3W8W A;  5L6G A;  2Y4G A; 
#chains in the Genus database with same CATH topology
 3B9J B;  1UXY A;  3D2J A;  3HRD C;  1ZR6 A;  3VTE A;  4BBY A;  2P3H A;  3POP A;  2OAI A;  4BC9 A;  2UUU A;  3W8X A;  2O3G A;  4HG0 A;  1DIQ A;  1N62 C;  1N61 C;  3ETR B;  4ML8 A;  5AE3 A;  3GSY A;  1N5W C;  4UD8 A;  5I1V A;  2VAO A;  1T3Q C;  2NQW A;  2R2Z A;  3D2H A;  3DED A;  2BVH A;  1W1K A;  4PVJ A;  2AXR A;  2WDW A;  4DNS A;  1E8H A;  1V97 A;  2PLS A;  3FW8 A;  3NVV B;  3W8W A;  2Y4G A;  5G5G B;  4BC7 A;  5AE1 A;  2I0K A;  2P4P A;  3PQB A;  3LAE A;  3S1D A;  4BCA A;  1I19 A;  5L6F A;  4MLA A;  3NVW B;  1FFV C;  1E8F A;  4PVK A;  2VFS A;  5D79 A;  5I1W A;  3D2D A;  1MBB A;  5AWV A;  2RK5 A;  3NS1 B;  1F0X A;  2VFU A;  2VFR A;  1W1R A;  3TSH A;  2QKN A;  4JB1 A;  1JRO A;  3FW9 A;  1DZN A;  4PVE A;  3FW7 A;  1E0Y A;  1E8G A;  3KJM A;  2GQT A;  1WVF A;  2GQU A;  5AE2 A;  1N60 C;  5G5H B;  5L6G A;  1QLU A;  2YVS A;  2W3R A;  2P13 A;  3SR6 B;  1W1J A;  1AHU A;  3NVZ B;  3NRZ B;  5FXP A;  3PM9 A;  3RJA A;  4JAY A;  1WYG A;  2PLI A;  4O95 A;  3AMZ A;  3NVY B;  2QPM A;  2VFV A;  1FIQ B;  2UUV A;  4EC3 A;  5HQX A;  2R8D A;  4PYT A;  1ZXI C;  3C0P A;  4ZOH B;  3RJ8 A;  1FO4 A;  2VFT A;  1VDV A;  1FFU C;  1N63 C;  4PWC A;  3JS8 A;  2BVG A;  3FWA A;  3BW7 A;  1JRP A;  3AM9 A;  2Q4W A;  3HSU A;  3S1F A;  2Y3R A;  2W3S A;  2IPI A;  5HHZ A;  2W55 A;  3EUB 3;  3TX1 A;  5ADZ A;  1W1S A;  1DII A;  1WVE A;  3I99 A;  1HSK A;  1RM6 B;  5K8E A;  1W1M A;  1VAO A;  2Q85 A;  1AHZ A;  2W54 A;  4XLO A;  1AHV A;  3W8Z A;  3S1C A;  3DQ0 A;  4OAL A;  5FXD A;  4PZF A;  2MBR A;  2Y3S A;  3LLB A;  1W1O A;  1MBT A;  2Y08 A;  5HMR A;  5FXF A;  3AN1 A;  5FXE A;  2EXR A;  4PWB A;  2BVF A;  4PVH A;  1SB3 B;  1W1L A;  1N5X A;  2E3T A;  1QLT A;  3TSJ A;  3S1E A;  1W1Q A; 
#chains in the Genus database with same CATH homology
 3B9J B;  1UXY A;  3D2J A;  3HRD C;  1ZR6 A;  3VTE A;  4BBY A;  2P3H A;  3POP A;  2OAI A;  4BC9 A;  2UUU A;  3W8X A;  2O3G A;  4HG0 A;  1DIQ A;  1N62 C;  1N61 C;  3ETR B;  4ML8 A;  5AE3 A;  3GSY A;  1N5W C;  4UD8 A;  5I1V A;  2VAO A;  1T3Q C;  2NQW A;  2R2Z A;  3D2H A;  3DED A;  2BVH A;  1W1K A;  4PVJ A;  2AXR A;  2WDW A;  4DNS A;  1E8H A;  1V97 A;  2PLS A;  3FW8 A;  3NVV B;  3W8W A;  2Y4G A;  5G5G B;  4BC7 A;  5AE1 A;  2I0K A;  2P4P A;  3PQB A;  3LAE A;  3S1D A;  4BCA A;  1I19 A;  5L6F A;  4MLA A;  3NVW B;  1FFV C;  1E8F A;  4PVK A;  2VFS A;  5D79 A;  5I1W A;  3D2D A;  1MBB A;  5AWV A;  2RK5 A;  3NS1 B;  1F0X A;  2VFU A;  2VFR A;  1W1R A;  3TSH A;  2QKN A;  4JB1 A;  1JRO A;  3FW9 A;  1DZN A;  4PVE A;  3FW7 A;  1E0Y A;  1E8G A;  3KJM A;  2GQT A;  1WVF A;  2GQU A;  5AE2 A;  1N60 C;  5G5H B;  5L6G A;  1QLU A;  2YVS A;  2W3R A;  2P13 A;  3SR6 B;  1W1J A;  1AHU A;  3NVZ B;  3NRZ B;  5FXP A;  3PM9 A;  3RJA A;  4JAY A;  1WYG A;  2PLI A;  4O95 A;  3AMZ A;  3NVY B;  2QPM A;  2VFV A;  1FIQ B;  2UUV A;  4EC3 A;  5HQX A;  2R8D A;  4PYT A;  1ZXI C;  3C0P A;  4ZOH B;  3RJ8 A;  1FO4 A;  2VFT A;  1VDV A;  1FFU C;  1N63 C;  4PWC A;  3JS8 A;  2BVG A;  3FWA A;  3BW7 A;  1JRP A;  3AM9 A;  2Q4W A;  3HSU A;  3S1F A;  2Y3R A;  2W3S A;  2IPI A;  5HHZ A;  2W55 A;  3EUB 3;  3TX1 A;  5ADZ A;  1W1S A;  1DII A;  1WVE A;  3I99 A;  1HSK A;  1RM6 B;  5K8E A;  1W1M A;  1VAO A;  2Q85 A;  1AHZ A;  2W54 A;  4XLO A;  1AHV A;  3W8Z A;  3S1C A;  3DQ0 A;  4OAL A;  5FXD A;  4PZF A;  2MBR A;  2Y3S A;  3LLB A;  1W1O A;  1MBT A;  2Y08 A;  5HMR A;  5FXF A;  3AN1 A;  5FXE A;  2EXR A;  4PWB A;  2BVF A;  4PVH A;  1SB3 B;  1W1L A;  1N5X A;  2E3T A;  1QLT A;  3TSJ A;  3S1E A;  1W1Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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