5L6FA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylobiose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6fA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6fA02
2WDWA 4PVHA 3TSJA 5D79A 3D2JA 4PVJA 5AWVA 3TSHA 2Y4GA 3W8ZA 3D2DA 3FW7A 3W8XA 5I1VA 2UUUA 1ZR6A 3PQBA 3D2HA 3FWAA 3GSYA 2Y3SA 3FW9A 5K8EA 2BVFA 4PWCA 3W8WA 2AXRA 3RJ8A 3FW8A 4XLOA 2Y08A 3HSUA 5L6GA 2BVHA 5L6FA 2UUVA 3POPA 4UD8A 3VTEA 4PVKA 3RJAA 2BVGA 5I1WA 4PVEA 4EC3A 2IPIA 4PZFA 4DNSA 2Y3RA 4PWBA
chains in the Genus database with same CATH superfamily
4PVJA 5AWVA 2PLSA 3JS8A 3C0PA 2QPMA 3NVWB 4BCAA 3NVYB 3D2DA 1N5XA 3S1DA 1W1QA 2QKNA 2Y3SA 2BVFA 2PLIA 3W8WA 1UXYA 4MLAA 1E8FA 4BC9A 5L6FA 4UD8A 3HRDC 4PVKA 3RJAA 2W55A 5FXEA 1AHVA 3NVVB 1W1JA 2IPIA 4ML8A 4PZFA 4DNSA 4PWBA 1ZXIC 1AHZA 2GQUA 4OALA 4PVHA 3TSJA 2RK5A 3EUB3 1V97A 2YVSA 5FXPA 2Y4GA 1DZNA 2VAOA 2W3SA 1SB3B 3S1EA 1FFVC 1VDVA 5I1VA 1ZR6A 3FWAA 1WYGA 4BC7A 5G5GB 3FW9A 5K8EA 2P3HA 4PWCA 1I19A 4ZOHB 3RJ8A 3AMZA 1W1LA 2Y08A 5L6GA 5ADZA 2BVHA 1DIQA 1HSKA 2NQWA 2VFUA 2UUVA 2VFTA 3AM9A 1W1KA 2BVGA 4EC3A 5I1WA 3PM9A 4JB1A 1DIIA 1WVFA 2I0KA 4PYTA 1VAOA 1T3QC 2Y3RA 2VFSA 3S1FA 2WDWA 3TX1A 3AN1A 3LAEA 4O95A 3DQ0A 2P13A 3S1CA 2O3GA 3TSHA 3NRZB 2R2ZA 2E3TA 1N61C 1JROA 1FIQB 2W54A 2VFRA 1W1SA 5FXDA 3I99A 3W8XA 2UUUA 3D2HA 3GSYA 2OAIA 1E0YA 5HMRA 2MBRA 1N5WC 3FW8A 1F0XA 1N63C 1FO4A 3POPA 1MBBA 1MBTA 1AHUA 4PVEA 3KJMA 1E8GA 5G5HB 5HQXA 2Q85A 2W3RA 5AE2A 5AE1A 3SR6B 3ETRB 1W1RA 5D79A 3D2JA 1JRPA 2EXRA 2P4PA 4BBYA 1FFUC 1RM6B 3W8ZA 1W1OA 3BW7A 1N62C 3FW7A 3PQBA 5HHZA 3NVZB 3B9JB 5AE3A 2AXRA 5FXFA 1N60C 4XLOA 3HSUA 4JAYA 3NS1B 3VTEA 1QLTA 3LLBA 1E8HA 1W1MA 2VFVA 3DEDA 1QLUA 2R8DA 1WVEA 2Q4WA 4HG0A 2GQTA
chains in the Genus database with same CATH topology
4PVJA 5AWVA 2PLSA 3JS8A 3C0PA 2QPMA 3NVWB 4BCAA 3NVYB 3D2DA 1N5XA 3S1DA 1W1QA 2QKNA 2Y3SA 2BVFA 2PLIA 3W8WA 1UXYA 4MLAA 1E8FA 4BC9A 5L6FA 4UD8A 3HRDC 4PVKA 3RJAA 2W55A 5FXEA 1AHVA 3NVVB 1W1JA 2IPIA 4ML8A 4PZFA 4DNSA 4PWBA 1ZXIC 1AHZA 2GQUA 4OALA 4PVHA 3TSJA 2RK5A 3EUB3 1V97A 2YVSA 5FXPA 2Y4GA 1DZNA 2VAOA 2W3SA 1SB3B 3S1EA 1FFVC 1VDVA 5I1VA 1ZR6A 3FWAA 1WYGA 4BC7A 5G5GB 3FW9A 5K8EA 2P3HA 4PWCA 1I19A 4ZOHB 3RJ8A 3AMZA 1W1LA 2Y08A 5L6GA 5ADZA 2BVHA 1DIQA 1HSKA 2NQWA 2VFUA 2UUVA 2VFTA 3AM9A 1W1KA 2BVGA 4EC3A 5I1WA 3PM9A 4JB1A 1DIIA 1WVFA 2I0KA 4PYTA 1VAOA 1T3QC 2Y3RA 2VFSA 3S1FA 2WDWA 3TX1A 3AN1A 3LAEA 4O95A 3DQ0A 2P13A 3S1CA 2O3GA 3TSHA 3NRZB 2R2ZA 2E3TA 1N61C 1JROA 1FIQB 2W54A 2VFRA 1W1SA 5FXDA 3I99A 3W8XA 2UUUA 3D2HA 3GSYA 2OAIA 1E0YA 5HMRA 2MBRA 1N5WC 3FW8A 1F0XA 1N63C 1FO4A 3POPA 1MBBA 1MBTA 1AHUA 4PVEA 3KJMA 1E8GA 5G5HB 5HQXA 2Q85A 2W3RA 5AE2A 5AE1A 3SR6B 3ETRB 1W1RA 5D79A 3D2JA 1JRPA 2EXRA 2P4PA 4BBYA 1FFUC 1RM6B 3W8ZA 1W1OA 3BW7A 1N62C 3FW7A 3PQBA 5HHZA 3NVZB 3B9JB 5AE3A 2AXRA 5FXFA 1N60C 4XLOA 3HSUA 4JAYA 3NS1B 3VTEA 1QLTA 3LLBA 1E8HA 1W1MA 2VFVA 3DEDA 1QLUA 2R8DA 1WVEA 2Q4WA 4HG0A 2GQTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDW A;  4PVH A;  3TSJ A;  5D79 A;  3D2J A;  4PVJ A;  5AWV A;  3TSH A;  2Y4G A;  3W8Z A;  3D2D A;  3FW7 A;  3W8X A;  5I1V A;  2UUU A;  1ZR6 A;  3PQB A;  3D2H A;  3FWA A;  3GSY A;  2Y3S A;  3FW9 A;  5K8E A;  2BVF A;  4PWC A;  3W8W A;  2AXR A;  3RJ8 A;  3FW8 A;  4XLO A;  2Y08 A;  3HSU A;  5L6G A;  2BVH A;  5L6F A;  2UUV A;  3POP A;  4UD8 A;  3VTE A;  4PVK A;  3RJA A;  2BVG A;  5I1W A;  4PVE A;  4EC3 A;  2IPI A;  4PZF A;  4DNS A;  2Y3R A;  4PWB A; 
#chains in the Genus database with same CATH topology
 4PVJ A;  5AWV A;  2PLS A;  3JS8 A;  3C0P A;  2QPM A;  3NVW B;  4BCA A;  3NVY B;  3D2D A;  1N5X A;  3S1D A;  1W1Q A;  2QKN A;  2Y3S A;  2BVF A;  2PLI A;  3W8W A;  1UXY A;  4MLA A;  1E8F A;  4BC9 A;  5L6F A;  4UD8 A;  3HRD C;  4PVK A;  3RJA A;  2W55 A;  5FXE A;  1AHV A;  3NVV B;  1W1J A;  2IPI A;  4ML8 A;  4PZF A;  4DNS A;  4PWB A;  1ZXI C;  1AHZ A;  2GQU A;  4OAL A;  4PVH A;  3TSJ A;  2RK5 A;  3EUB 3;  1V97 A;  2YVS A;  5FXP A;  2Y4G A;  1DZN A;  2VAO A;  2W3S A;  1SB3 B;  3S1E A;  1FFV C;  1VDV A;  5I1V A;  1ZR6 A;  3FWA A;  1WYG A;  4BC7 A;  5G5G B;  3FW9 A;  5K8E A;  2P3H A;  4PWC A;  1I19 A;  4ZOH B;  3RJ8 A;  3AMZ A;  1W1L A;  2Y08 A;  5L6G A;  5ADZ A;  2BVH A;  1DIQ A;  1HSK A;  2NQW A;  2VFU A;  2UUV A;  2VFT A;  3AM9 A;  1W1K A;  2BVG A;  4EC3 A;  5I1W A;  3PM9 A;  4JB1 A;  1DII A;  1WVF A;  2I0K A;  4PYT A;  1VAO A;  1T3Q C;  2Y3R A;  2VFS A;  3S1F A;  2WDW A;  3TX1 A;  3AN1 A;  3LAE A;  4O95 A;  3DQ0 A;  2P13 A;  3S1C A;  2O3G A;  3TSH A;  3NRZ B;  2R2Z A;  2E3T A;  1N61 C;  1JRO A;  1FIQ B;  2W54 A;  2VFR A;  1W1S A;  5FXD A;  3I99 A;  3W8X A;  2UUU A;  3D2H A;  3GSY A;  2OAI A;  1E0Y A;  5HMR A;  2MBR A;  1N5W C;  3FW8 A;  1F0X A;  1N63 C;  1FO4 A;  3POP A;  1MBB A;  1MBT A;  1AHU A;  4PVE A;  3KJM A;  1E8G A;  5G5H B;  5HQX A;  2Q85 A;  2W3R A;  5AE2 A;  5AE1 A;  3SR6 B;  3ETR B;  1W1R A;  5D79 A;  3D2J A;  1JRP A;  2EXR A;  2P4P A;  4BBY A;  1FFU C;  1RM6 B;  3W8Z A;  1W1O A;  3BW7 A;  1N62 C;  3FW7 A;  3PQB A;  5HHZ A;  3NVZ B;  3B9J B;  5AE3 A;  2AXR A;  5FXF A;  1N60 C;  4XLO A;  3HSU A;  4JAY A;  3NS1 B;  3VTE A;  1QLT A;  3LLB A;  1E8H A;  1W1M A;  2VFV A;  3DED A;  1QLU A;  2R8D A;  1WVE A;  2Q4W A;  4HG0 A;  2GQT A; 
#chains in the Genus database with same CATH homology
 4PVJ A;  5AWV A;  2PLS A;  3JS8 A;  3C0P A;  2QPM A;  3NVW B;  4BCA A;  3NVY B;  3D2D A;  1N5X A;  3S1D A;  1W1Q A;  2QKN A;  2Y3S A;  2BVF A;  2PLI A;  3W8W A;  1UXY A;  4MLA A;  1E8F A;  4BC9 A;  5L6F A;  4UD8 A;  3HRD C;  4PVK A;  3RJA A;  2W55 A;  5FXE A;  1AHV A;  3NVV B;  1W1J A;  2IPI A;  4ML8 A;  4PZF A;  4DNS A;  4PWB A;  1ZXI C;  1AHZ A;  2GQU A;  4OAL A;  4PVH A;  3TSJ A;  2RK5 A;  3EUB 3;  1V97 A;  2YVS A;  5FXP A;  2Y4G A;  1DZN A;  2VAO A;  2W3S A;  1SB3 B;  3S1E A;  1FFV C;  1VDV A;  5I1V A;  1ZR6 A;  3FWA A;  1WYG A;  4BC7 A;  5G5G B;  3FW9 A;  5K8E A;  2P3H A;  4PWC A;  1I19 A;  4ZOH B;  3RJ8 A;  3AMZ A;  1W1L A;  2Y08 A;  5L6G A;  5ADZ A;  2BVH A;  1DIQ A;  1HSK A;  2NQW A;  2VFU A;  2UUV A;  2VFT A;  3AM9 A;  1W1K A;  2BVG A;  4EC3 A;  5I1W A;  3PM9 A;  4JB1 A;  1DII A;  1WVF A;  2I0K A;  4PYT A;  1VAO A;  1T3Q C;  2Y3R A;  2VFS A;  3S1F A;  2WDW A;  3TX1 A;  3AN1 A;  3LAE A;  4O95 A;  3DQ0 A;  2P13 A;  3S1C A;  2O3G A;  3TSH A;  3NRZ B;  2R2Z A;  2E3T A;  1N61 C;  1JRO A;  1FIQ B;  2W54 A;  2VFR A;  1W1S A;  5FXD A;  3I99 A;  3W8X A;  2UUU A;  3D2H A;  3GSY A;  2OAI A;  1E0Y A;  5HMR A;  2MBR A;  1N5W C;  3FW8 A;  1F0X A;  1N63 C;  1FO4 A;  3POP A;  1MBB A;  1MBT A;  1AHU A;  4PVE A;  3KJM A;  1E8G A;  5G5H B;  5HQX A;  2Q85 A;  2W3R A;  5AE2 A;  5AE1 A;  3SR6 B;  3ETR B;  1W1R A;  5D79 A;  3D2J A;  1JRP A;  2EXR A;  2P4P A;  4BBY A;  1FFU C;  1RM6 B;  3W8Z A;  1W1O A;  3BW7 A;  1N62 C;  3FW7 A;  3PQB A;  5HHZ A;  3NVZ B;  3B9J B;  5AE3 A;  2AXR A;  5FXF A;  1N60 C;  4XLO A;  3HSU A;  4JAY A;  3NS1 B;  3VTE A;  1QLT A;  3LLB A;  1E8H A;  1W1M A;  2VFV A;  3DED A;  1QLU A;  2R8D A;  1WVE A;  2Q4W A;  4HG0 A;  2GQT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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