5L6FA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylobiose
Total Genus 148
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6fA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6fA02
3FW8A 2WDWA 5L6FA 3RJAA 2Y3SA 4PVKA 2BVFA 3GSYA 4PVJA 5AWVA 3D2JA 3FW9A 3PQBA 4PVHA 3HSUA 3VTEA 2UUUA 4PVEA 4UD8A 5D79A 2Y3RA 4EC3A 3FW7A 3RJ8A 4PZFA 3TSJA 4DNSA 3D2DA 3W8XA 2BVHA 4XLOA 3POPA 2AXRA 3D2HA 4PWBA 5L6GA 3W8ZA 2UUVA 2IPIA 5K8EA 3FWAA 3TSHA 1ZR6A 5I1WA 2BVGA 3W8WA 4PWCA 2Y4GA 5I1VA 2Y08A
chains in the Genus database with same CATH superfamily
1W1QA 1F0XA 2OAIA 5HHZA 4PYTA 4PVJA 3S1EA 3PQBA 2PLSA 1SB3B 3DQ0A 1E0YA 1QLUA 3NRZB 4UD8A 4EC3A 3JS8A 3AM9A 1W1MA 1UXYA 3BW7A 4DNSA 1JRPA 2BVHA 5HMRA 3D2HA 1W1JA 5L6GA 1HSKA 3NS1B 3AMZA 1DIQA 3NVZB 2W3RA 1VDVA 4ML8A 2W54A 1FFVC 2Y08A 3RJAA 1N60C 3SR6B 3TX1A 2P4PA 3ETRB 3EUB3 1N5WC 2W3SA 3GSYA 4BC9A 5AWVA 3D2JA 1W1KA 2YVSA 3FW9A 1W1LA 1AHVA 4BCAA 5FXDA 4PVHA 5D79A 2EXRA 3FW7A 2E3TA 3RJ8A 1ZXIC 3LAEA 2R8DA 1MBBA 3HRDC 2VFTA 3D2DA 3W8XA 1WYGA 1WVFA 2W55A 1W1RA 3W8ZA 2IPIA 5K8EA 1AHUA 2P3HA 1FO4A 3W8WA 4MLAA 4JB1A 5FXFA 3S1DA 5G5HB 3FW8A 2WDWA 2VFVA 4BC7A 5FXPA 4BBYA 1I19A 5HQXA 5AE1A 1VAOA 4ZOHB 1W1OA 2I0KA 2NQWA 5FXEA 1WVEA 1W1SA 2Q4WA 1JROA 2R2ZA 5G5GB 3TSJA 4HG0A 4XLOA 3POPA 5ADZA 1N62C 2GQUA 3PM9A 3DEDA 5I1WA 2BVGA 1E8HA 1E8GA 1QLTA 2Y4GA 2PLIA 1T3QC 3LLBA 3KJMA 2P13A 2MBRA 5I1VA 5L6FA 1AHZA 2VFSA 1E8FA 2Y3SA 1N5XA 4JAYA 3NVVB 4PVKA 2BVFA 1DZNA 3C0PA 1FFUC 4OALA 3HSUA 2VAOA 3VTEA 1DIIA 2UUUA 4PVEA 3S1FA 2Y3RA 1V97A 3B9JB 2QPMA 4PZFA 5AE3A 2QKNA 1FIQB 2AXRA 4PWBA 3AN1A 5AE2A 3I99A 2O3GA 2RK5A 2Q85A 2UUVA 2VFRA 2VFUA 2GQTA 3FWAA 1MBTA 3NVWB 1ZR6A 3TSHA 1N61C 4PWCA 3NVYB 1N63C 1RM6B 4O95A 3S1CA
chains in the Genus database with same CATH topology
1W1QA 1F0XA 2OAIA 5HHZA 4PYTA 4PVJA 3S1EA 3PQBA 2PLSA 1SB3B 3DQ0A 1E0YA 1QLUA 3NRZB 4UD8A 4EC3A 3JS8A 3AM9A 1W1MA 1UXYA 3BW7A 4DNSA 1JRPA 2BVHA 5HMRA 3D2HA 1W1JA 5L6GA 1HSKA 3NS1B 3AMZA 1DIQA 3NVZB 2W3RA 1VDVA 4ML8A 2W54A 1FFVC 2Y08A 3RJAA 1N60C 3SR6B 3TX1A 2P4PA 3ETRB 3EUB3 1N5WC 2W3SA 3GSYA 4BC9A 5AWVA 3D2JA 1W1KA 2YVSA 3FW9A 1W1LA 1AHVA 4BCAA 5FXDA 4PVHA 5D79A 2EXRA 3FW7A 2E3TA 3RJ8A 1ZXIC 3LAEA 2R8DA 1MBBA 3HRDC 2VFTA 3D2DA 3W8XA 1WYGA 1WVFA 2W55A 1W1RA 3W8ZA 2IPIA 5K8EA 1AHUA 2P3HA 1FO4A 3W8WA 4MLAA 4JB1A 5FXFA 3S1DA 5G5HB 3FW8A 2WDWA 2VFVA 4BC7A 5FXPA 4BBYA 1I19A 5HQXA 5AE1A 1VAOA 4ZOHB 1W1OA 2I0KA 2NQWA 5FXEA 1WVEA 1W1SA 2Q4WA 1JROA 2R2ZA 5G5GB 3TSJA 4HG0A 4XLOA 3POPA 5ADZA 1N62C 2GQUA 3PM9A 3DEDA 5I1WA 2BVGA 1E8HA 1E8GA 1QLTA 2Y4GA 2PLIA 1T3QC 3LLBA 3KJMA 2P13A 2MBRA 5I1VA 5L6FA 1AHZA 2VFSA 1E8FA 2Y3SA 1N5XA 4JAYA 3NVVB 4PVKA 2BVFA 1DZNA 3C0PA 1FFUC 4OALA 3HSUA 2VAOA 3VTEA 1DIIA 2UUUA 4PVEA 3S1FA 2Y3RA 1V97A 3B9JB 2QPMA 4PZFA 5AE3A 2QKNA 1FIQB 2AXRA 4PWBA 3AN1A 5AE2A 3I99A 2O3GA 2RK5A 2Q85A 2UUVA 2VFRA 2VFUA 2GQTA 3FWAA 1MBTA 3NVWB 1ZR6A 3TSHA 1N61C 4PWCA 3NVYB 1N63C 1RM6B 4O95A 3S1CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FW8 A;  2WDW A;  5L6F A;  3RJA A;  2Y3S A;  4PVK A;  2BVF A;  3GSY A;  4PVJ A;  5AWV A;  3D2J A;  3FW9 A;  3PQB A;  4PVH A;  3HSU A;  3VTE A;  2UUU A;  4PVE A;  4UD8 A;  5D79 A;  2Y3R A;  4EC3 A;  3FW7 A;  3RJ8 A;  4PZF A;  3TSJ A;  4DNS A;  3D2D A;  3W8X A;  2BVH A;  4XLO A;  3POP A;  2AXR A;  3D2H A;  4PWB A;  5L6G A;  3W8Z A;  2UUV A;  2IPI A;  5K8E A;  3FWA A;  3TSH A;  1ZR6 A;  5I1W A;  2BVG A;  3W8W A;  4PWC A;  2Y4G A;  5I1V A;  2Y08 A; 
#chains in the Genus database with same CATH topology
 1W1Q A;  1F0X A;  2OAI A;  5HHZ A;  4PYT A;  4PVJ A;  3S1E A;  3PQB A;  2PLS A;  1SB3 B;  3DQ0 A;  1E0Y A;  1QLU A;  3NRZ B;  4UD8 A;  4EC3 A;  3JS8 A;  3AM9 A;  1W1M A;  1UXY A;  3BW7 A;  4DNS A;  1JRP A;  2BVH A;  5HMR A;  3D2H A;  1W1J A;  5L6G A;  1HSK A;  3NS1 B;  3AMZ A;  1DIQ A;  3NVZ B;  2W3R A;  1VDV A;  4ML8 A;  2W54 A;  1FFV C;  2Y08 A;  3RJA A;  1N60 C;  3SR6 B;  3TX1 A;  2P4P A;  3ETR B;  3EUB 3;  1N5W C;  2W3S A;  3GSY A;  4BC9 A;  5AWV A;  3D2J A;  1W1K A;  2YVS A;  3FW9 A;  1W1L A;  1AHV A;  4BCA A;  5FXD A;  4PVH A;  5D79 A;  2EXR A;  3FW7 A;  2E3T A;  3RJ8 A;  1ZXI C;  3LAE A;  2R8D A;  1MBB A;  3HRD C;  2VFT A;  3D2D A;  3W8X A;  1WYG A;  1WVF A;  2W55 A;  1W1R A;  3W8Z A;  2IPI A;  5K8E A;  1AHU A;  2P3H A;  1FO4 A;  3W8W A;  4MLA A;  4JB1 A;  5FXF A;  3S1D A;  5G5H B;  3FW8 A;  2WDW A;  2VFV A;  4BC7 A;  5FXP A;  4BBY A;  1I19 A;  5HQX A;  5AE1 A;  1VAO A;  4ZOH B;  1W1O A;  2I0K A;  2NQW A;  5FXE A;  1WVE A;  1W1S A;  2Q4W A;  1JRO A;  2R2Z A;  5G5G B;  3TSJ A;  4HG0 A;  4XLO A;  3POP A;  5ADZ A;  1N62 C;  2GQU A;  3PM9 A;  3DED A;  5I1W A;  2BVG A;  1E8H A;  1E8G A;  1QLT A;  2Y4G A;  2PLI A;  1T3Q C;  3LLB A;  3KJM A;  2P13 A;  2MBR A;  5I1V A;  5L6F A;  1AHZ A;  2VFS A;  1E8F A;  2Y3S A;  1N5X A;  4JAY A;  3NVV B;  4PVK A;  2BVF A;  1DZN A;  3C0P A;  1FFU C;  4OAL A;  3HSU A;  2VAO A;  3VTE A;  1DII A;  2UUU A;  4PVE A;  3S1F A;  2Y3R A;  1V97 A;  3B9J B;  2QPM A;  4PZF A;  5AE3 A;  2QKN A;  1FIQ B;  2AXR A;  4PWB A;  3AN1 A;  5AE2 A;  3I99 A;  2O3G A;  2RK5 A;  2Q85 A;  2UUV A;  2VFR A;  2VFU A;  2GQT A;  3FWA A;  1MBT A;  3NVW B;  1ZR6 A;  3TSH A;  1N61 C;  4PWC A;  3NVY B;  1N63 C;  1RM6 B;  4O95 A;  3S1C A; 
#chains in the Genus database with same CATH homology
 1W1Q A;  1F0X A;  2OAI A;  5HHZ A;  4PYT A;  4PVJ A;  3S1E A;  3PQB A;  2PLS A;  1SB3 B;  3DQ0 A;  1E0Y A;  1QLU A;  3NRZ B;  4UD8 A;  4EC3 A;  3JS8 A;  3AM9 A;  1W1M A;  1UXY A;  3BW7 A;  4DNS A;  1JRP A;  2BVH A;  5HMR A;  3D2H A;  1W1J A;  5L6G A;  1HSK A;  3NS1 B;  3AMZ A;  1DIQ A;  3NVZ B;  2W3R A;  1VDV A;  4ML8 A;  2W54 A;  1FFV C;  2Y08 A;  3RJA A;  1N60 C;  3SR6 B;  3TX1 A;  2P4P A;  3ETR B;  3EUB 3;  1N5W C;  2W3S A;  3GSY A;  4BC9 A;  5AWV A;  3D2J A;  1W1K A;  2YVS A;  3FW9 A;  1W1L A;  1AHV A;  4BCA A;  5FXD A;  4PVH A;  5D79 A;  2EXR A;  3FW7 A;  2E3T A;  3RJ8 A;  1ZXI C;  3LAE A;  2R8D A;  1MBB A;  3HRD C;  2VFT A;  3D2D A;  3W8X A;  1WYG A;  1WVF A;  2W55 A;  1W1R A;  3W8Z A;  2IPI A;  5K8E A;  1AHU A;  2P3H A;  1FO4 A;  3W8W A;  4MLA A;  4JB1 A;  5FXF A;  3S1D A;  5G5H B;  3FW8 A;  2WDW A;  2VFV A;  4BC7 A;  5FXP A;  4BBY A;  1I19 A;  5HQX A;  5AE1 A;  1VAO A;  4ZOH B;  1W1O A;  2I0K A;  2NQW A;  5FXE A;  1WVE A;  1W1S A;  2Q4W A;  1JRO A;  2R2Z A;  5G5G B;  3TSJ A;  4HG0 A;  4XLO A;  3POP A;  5ADZ A;  1N62 C;  2GQU A;  3PM9 A;  3DED A;  5I1W A;  2BVG A;  1E8H A;  1E8G A;  1QLT A;  2Y4G A;  2PLI A;  1T3Q C;  3LLB A;  3KJM A;  2P13 A;  2MBR A;  5I1V A;  5L6F A;  1AHZ A;  2VFS A;  1E8F A;  2Y3S A;  1N5X A;  4JAY A;  3NVV B;  4PVK A;  2BVF A;  1DZN A;  3C0P A;  1FFU C;  4OAL A;  3HSU A;  2VAO A;  3VTE A;  1DII A;  2UUU A;  4PVE A;  3S1F A;  2Y3R A;  1V97 A;  3B9J B;  2QPM A;  4PZF A;  5AE3 A;  2QKN A;  1FIQ B;  2AXR A;  4PWB A;  3AN1 A;  5AE2 A;  3I99 A;  2O3G A;  2RK5 A;  2Q85 A;  2UUV A;  2VFR A;  2VFU A;  2GQT A;  3FWA A;  1MBT A;  3NVW B;  1ZR6 A;  3TSH A;  1N61 C;  4PWC A;  3NVY B;  1N63 C;  1RM6 B;  4O95 A;  3S1C A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...