5L6FA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylobiose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6fA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6fA02
3TSJA 3FWAA 2UUVA 3VTEA 4PWBA 2Y4GA 5I1WA 2BVGA 5L6GA 3W8XA 5D79A 3D2HA 4DNSA 3GSYA 3FW9A 3HSUA 4PWCA 2WDWA 2AXRA 4PZFA 3RJAA 3D2JA 3POPA 2UUUA 1ZR6A 5I1VA 2Y3RA 3TSHA 3W8WA 2Y3SA 3RJ8A 5K8EA 5AWVA 3D2DA 2IPIA 4PVKA 4PVJA 4PVHA 2BVHA 4UD8A 4XLOA 2BVFA 3FW8A 4EC3A 3W8ZA 3FW7A 3PQBA 5L6FA 2Y08A 4PVEA
chains in the Genus database with same CATH superfamily
1FFVC 3TSJA 2GQTA 3JS8A 1QLUA 1N61C 5HMRA 2Y4GA 1WVFA 1E8GA 1DIQA 2EXRA 5D79A 2P4PA 3D2HA 3GSYA 3B9JB 3C0PA 3HSUA 4JB1A 5FXPA 1VAOA 1WYGA 1N60C 2GQUA 3RJAA 1W1KA 1N5XA 2VFVA 5AE1A 2PLSA 2QPMA 3BW7A 5I1VA 4O95A 5FXEA 2PLIA 3D2DA 3DEDA 2IPIA 3LLBA 3NVWB 4PVJA 5AWVA 3RJ8A 2BVFA 1E0YA 4EC3A 1FO4A 3I99A 3NRZB 1W1SA 3S1DA 1RM6B 5FXDA 3FWAA 2P3HA 1T3QC 1FFUC 1MBBA 1F0XA 4PWBA 1AHUA 2P13A 1SB3B 5L6GA 5G5HB 1DIIA 1FIQB 2E3TA 4PWCA 1N63C 2R2ZA 5HQXA 2WDWA 4BBYA 2OAIA 3NVVB 4MLAA 2MBRA 3W8WA 4DNSA 4HG0A 2RK5A 2Q85A 4PVKA 2O3GA 5K8EA 4ML8A 2VFTA 3AM9A 4UD8A 3W8ZA 3PQBA 1V97A 2VAOA 1W1OA 1N5WC 4BCAA 2UUVA 1W1JA 1W1LA 1AHVA 1VDVA 5I1WA 2BVGA 5AE3A 3HRDC 1E8HA 3AMZA 3W8XA 5AE2A 2W3RA 3FW9A 1JROA 2Q4WA 4BC7A 1W1QA 3NS1B 4OALA 3PM9A 2AXRA 2W3SA 3AN1A 4PZFA 5G5GB 1MBTA 2UUUA 1I19A 1W1RA 1DZNA 3ETRB 3EUB3 2BVHA 2VFUA 4XLOA 5L6FA 2NQWA 1AHZA 1HSKA 3KJMA 4PVEA 3DQ0A 4PYTA 1N62C 2I0KA 2YVSA 3VTEA 5ADZA 4JAYA 1QLTA 1E8FA 3NVZB 2W54A 2R8DA 3S1FA 3S1EA 1ZXIC 4ZOHB 1JRPA 3D2JA 4BC9A 3POPA 3NVYB 3TX1A 1UXYA 3S1CA 1ZR6A 1WVEA 2VFSA 2Y3RA 3TSHA 2Y3SA 2W55A 4PVHA 3SR6B 3FW8A 2VFRA 3FW7A 5HHZA 1W1MA 2QKNA 2Y08A 3LAEA 5FXFA
chains in the Genus database with same CATH topology
1FFVC 3TSJA 2GQTA 3JS8A 1QLUA 1N61C 5HMRA 2Y4GA 1WVFA 1E8GA 1DIQA 2EXRA 5D79A 2P4PA 3D2HA 3GSYA 3B9JB 3C0PA 3HSUA 4JB1A 5FXPA 1VAOA 1WYGA 1N60C 2GQUA 3RJAA 1W1KA 1N5XA 2VFVA 5AE1A 2PLSA 2QPMA 3BW7A 5I1VA 4O95A 5FXEA 2PLIA 3D2DA 3DEDA 2IPIA 3LLBA 3NVWB 4PVJA 5AWVA 3RJ8A 2BVFA 1E0YA 4EC3A 1FO4A 3I99A 3NRZB 1W1SA 3S1DA 1RM6B 5FXDA 3FWAA 2P3HA 1T3QC 1FFUC 1MBBA 1F0XA 4PWBA 1AHUA 2P13A 1SB3B 5L6GA 5G5HB 1DIIA 1FIQB 2E3TA 4PWCA 1N63C 2R2ZA 5HQXA 2WDWA 4BBYA 2OAIA 3NVVB 4MLAA 2MBRA 3W8WA 4DNSA 4HG0A 2RK5A 2Q85A 4PVKA 2O3GA 5K8EA 4ML8A 2VFTA 3AM9A 4UD8A 3W8ZA 3PQBA 1V97A 2VAOA 1W1OA 1N5WC 4BCAA 2UUVA 1W1JA 1W1LA 1AHVA 1VDVA 5I1WA 2BVGA 5AE3A 3HRDC 1E8HA 3AMZA 3W8XA 5AE2A 2W3RA 3FW9A 1JROA 2Q4WA 4BC7A 1W1QA 3NS1B 4OALA 3PM9A 2AXRA 2W3SA 3AN1A 4PZFA 5G5GB 1MBTA 2UUUA 1I19A 1W1RA 1DZNA 3ETRB 3EUB3 2BVHA 2VFUA 4XLOA 5L6FA 2NQWA 1AHZA 1HSKA 3KJMA 4PVEA 3DQ0A 4PYTA 1N62C 2I0KA 2YVSA 3VTEA 5ADZA 4JAYA 1QLTA 1E8FA 3NVZB 2W54A 2R8DA 3S1FA 3S1EA 1ZXIC 4ZOHB 1JRPA 3D2JA 4BC9A 3POPA 3NVYB 3TX1A 1UXYA 3S1CA 1ZR6A 1WVEA 2VFSA 2Y3RA 3TSHA 2Y3SA 2W55A 4PVHA 3SR6B 3FW8A 2VFRA 3FW7A 5HHZA 1W1MA 2QKNA 2Y08A 3LAEA 5FXFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TSJ A;  3FWA A;  2UUV A;  3VTE A;  4PWB A;  2Y4G A;  5I1W A;  2BVG A;  5L6G A;  3W8X A;  5D79 A;  3D2H A;  4DNS A;  3GSY A;  3FW9 A;  3HSU A;  4PWC A;  2WDW A;  2AXR A;  4PZF A;  3RJA A;  3D2J A;  3POP A;  2UUU A;  1ZR6 A;  5I1V A;  2Y3R A;  3TSH A;  3W8W A;  2Y3S A;  3RJ8 A;  5K8E A;  5AWV A;  3D2D A;  2IPI A;  4PVK A;  4PVJ A;  4PVH A;  2BVH A;  4UD8 A;  4XLO A;  2BVF A;  3FW8 A;  4EC3 A;  3W8Z A;  3FW7 A;  3PQB A;  5L6F A;  2Y08 A;  4PVE A; 
#chains in the Genus database with same CATH topology
 1FFV C;  3TSJ A;  2GQT A;  3JS8 A;  1QLU A;  1N61 C;  5HMR A;  2Y4G A;  1WVF A;  1E8G A;  1DIQ A;  2EXR A;  5D79 A;  2P4P A;  3D2H A;  3GSY A;  3B9J B;  3C0P A;  3HSU A;  4JB1 A;  5FXP A;  1VAO A;  1WYG A;  1N60 C;  2GQU A;  3RJA A;  1W1K A;  1N5X A;  2VFV A;  5AE1 A;  2PLS A;  2QPM A;  3BW7 A;  5I1V A;  4O95 A;  5FXE A;  2PLI A;  3D2D A;  3DED A;  2IPI A;  3LLB A;  3NVW B;  4PVJ A;  5AWV A;  3RJ8 A;  2BVF A;  1E0Y A;  4EC3 A;  1FO4 A;  3I99 A;  3NRZ B;  1W1S A;  3S1D A;  1RM6 B;  5FXD A;  3FWA A;  2P3H A;  1T3Q C;  1FFU C;  1MBB A;  1F0X A;  4PWB A;  1AHU A;  2P13 A;  1SB3 B;  5L6G A;  5G5H B;  1DII A;  1FIQ B;  2E3T A;  4PWC A;  1N63 C;  2R2Z A;  5HQX A;  2WDW A;  4BBY A;  2OAI A;  3NVV B;  4MLA A;  2MBR A;  3W8W A;  4DNS A;  4HG0 A;  2RK5 A;  2Q85 A;  4PVK A;  2O3G A;  5K8E A;  4ML8 A;  2VFT A;  3AM9 A;  4UD8 A;  3W8Z A;  3PQB A;  1V97 A;  2VAO A;  1W1O A;  1N5W C;  4BCA A;  2UUV A;  1W1J A;  1W1L A;  1AHV A;  1VDV A;  5I1W A;  2BVG A;  5AE3 A;  3HRD C;  1E8H A;  3AMZ A;  3W8X A;  5AE2 A;  2W3R A;  3FW9 A;  1JRO A;  2Q4W A;  4BC7 A;  1W1Q A;  3NS1 B;  4OAL A;  3PM9 A;  2AXR A;  2W3S A;  3AN1 A;  4PZF A;  5G5G B;  1MBT A;  2UUU A;  1I19 A;  1W1R A;  1DZN A;  3ETR B;  3EUB 3;  2BVH A;  2VFU A;  4XLO A;  5L6F A;  2NQW A;  1AHZ A;  1HSK A;  3KJM A;  4PVE A;  3DQ0 A;  4PYT A;  1N62 C;  2I0K A;  2YVS A;  3VTE A;  5ADZ A;  4JAY A;  1QLT A;  1E8F A;  3NVZ B;  2W54 A;  2R8D A;  3S1F A;  3S1E A;  1ZXI C;  4ZOH B;  1JRP A;  3D2J A;  4BC9 A;  3POP A;  3NVY B;  3TX1 A;  1UXY A;  3S1C A;  1ZR6 A;  1WVE A;  2VFS A;  2Y3R A;  3TSH A;  2Y3S A;  2W55 A;  4PVH A;  3SR6 B;  3FW8 A;  2VFR A;  3FW7 A;  5HHZ A;  1W1M A;  2QKN A;  2Y08 A;  3LAE A;  5FXF A; 
#chains in the Genus database with same CATH homology
 1FFV C;  3TSJ A;  2GQT A;  3JS8 A;  1QLU A;  1N61 C;  5HMR A;  2Y4G A;  1WVF A;  1E8G A;  1DIQ A;  2EXR A;  5D79 A;  2P4P A;  3D2H A;  3GSY A;  3B9J B;  3C0P A;  3HSU A;  4JB1 A;  5FXP A;  1VAO A;  1WYG A;  1N60 C;  2GQU A;  3RJA A;  1W1K A;  1N5X A;  2VFV A;  5AE1 A;  2PLS A;  2QPM A;  3BW7 A;  5I1V A;  4O95 A;  5FXE A;  2PLI A;  3D2D A;  3DED A;  2IPI A;  3LLB A;  3NVW B;  4PVJ A;  5AWV A;  3RJ8 A;  2BVF A;  1E0Y A;  4EC3 A;  1FO4 A;  3I99 A;  3NRZ B;  1W1S A;  3S1D A;  1RM6 B;  5FXD A;  3FWA A;  2P3H A;  1T3Q C;  1FFU C;  1MBB A;  1F0X A;  4PWB A;  1AHU A;  2P13 A;  1SB3 B;  5L6G A;  5G5H B;  1DII A;  1FIQ B;  2E3T A;  4PWC A;  1N63 C;  2R2Z A;  5HQX A;  2WDW A;  4BBY A;  2OAI A;  3NVV B;  4MLA A;  2MBR A;  3W8W A;  4DNS A;  4HG0 A;  2RK5 A;  2Q85 A;  4PVK A;  2O3G A;  5K8E A;  4ML8 A;  2VFT A;  3AM9 A;  4UD8 A;  3W8Z A;  3PQB A;  1V97 A;  2VAO A;  1W1O A;  1N5W C;  4BCA A;  2UUV A;  1W1J A;  1W1L A;  1AHV A;  1VDV A;  5I1W A;  2BVG A;  5AE3 A;  3HRD C;  1E8H A;  3AMZ A;  3W8X A;  5AE2 A;  2W3R A;  3FW9 A;  1JRO A;  2Q4W A;  4BC7 A;  1W1Q A;  3NS1 B;  4OAL A;  3PM9 A;  2AXR A;  2W3S A;  3AN1 A;  4PZF A;  5G5G B;  1MBT A;  2UUU A;  1I19 A;  1W1R A;  1DZN A;  3ETR B;  3EUB 3;  2BVH A;  2VFU A;  4XLO A;  5L6F A;  2NQW A;  1AHZ A;  1HSK A;  3KJM A;  4PVE A;  3DQ0 A;  4PYT A;  1N62 C;  2I0K A;  2YVS A;  3VTE A;  5ADZ A;  4JAY A;  1QLT A;  1E8F A;  3NVZ B;  2W54 A;  2R8D A;  3S1F A;  3S1E A;  1ZXI C;  4ZOH B;  1JRP A;  3D2J A;  4BC9 A;  3POP A;  3NVY B;  3TX1 A;  1UXY A;  3S1C A;  1ZR6 A;  1WVE A;  2VFS A;  2Y3R A;  3TSH A;  2Y3S A;  2W55 A;  4PVH A;  3SR6 B;  3FW8 A;  2VFR A;  3FW7 A;  5HHZ A;  1W1M A;  2QKN A;  2Y08 A;  3LAE A;  5FXF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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