5L6WC

Structure of the limk1-atpgammas-cfl1 complex
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
165
structure length
165
Chain Sequence
ACGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords LIM domain kinase 1
publication title Structure Of the LIMK1-ATPgammaS-CFL1 Complex
rcsb
source organism Homo sapiens
total genus 43
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2016-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 5l6wC00
1T3XA 2LLFA 3EFOA 1NMDG 5KYUA 2HD7A 3CIPG 5HVKB 4BEX1 2KVKA 4KEFA 2MOTA 1X67A 4LIZA 2D8BA 4KEDA 1JHWA 1PD0A 1V6FA 4S10C 3FG6A 5L6WC 1YAGG 1SVRA 1KCQA 3EGDB 2NUTB 3EH1A 1YVNG 5A1MA 2LXXA 1DEJS 1M2VB 1AHQA 3DAWB 5DD2A 4Z94G 5IVUA 5KYYB 2VIKA 5KYXA 2FF6G 1TVJA 3CI5G 1PD1A 1UDMA 1QPVA 3EGXA 2FGHA 1HQZ1 3EFOB 1TMWA 5KYUB 4CBWG 2FH2A 2FH1A 1WM4A 1T2LA 3TU5B 3A5OS 2MV2A 5FAEA 1MDUA 1Q8GA 4KEEA 2I2QA 1H1VG 3CJBG 1D0NA 3EG9A 1C0FS 2FH3A 4PKHB 2FH4A 3A5MS 5KYWB 2MP4A 1VKKA 3EGDA 2NUTA 1NPHA 3A5NS 2L72A 2FF3A 2NUPB 1NM1G 1VFQA 4CBUG 1AK7A 5KYXB 2VILA 5KYYA 3Q2BA 1T3YA 3EGXB 1COFA 1M2OA 4CBXG 3A5LS 1EQYS 1F7SA 3FFNA 1D4XG 4PKIG 1T44G 5HVKD 1C0GS 1CFYA 1M4JA 2W0IA 2VACA 1SVQA 2QTVA 1P8XA 1SVYA 1J72A 1WFSA 3EG9B 1M2VA 2XF1A 5FAFA 3L50A 1ESVS 3FFKA 1WNJA 5KYNA 4PKGG 1RGIG 3CJCG 5KYWA 2LJ8A 1PCXA 3EH2A 1NLVG 2NUPA 1CNUA 2XFAA 4JD2H 3FG7A 1P8ZG 1Q8XA 1AK6A
chains in the Genus database with same CATH superfamily
1T3XA 2LLFA 3EFOA 1NMDG 5KYUA 2HD7A 3CIPG 5HVKB 4BEX1 2KVKA 4KEFA 2MOTA 1X67A 4LIZA 2D8BA 4KEDA 1JHWA 1PD0A 1V6FA 4S10C 3FG6A 5L6WC 1YAGG 1SVRA 1KCQA 3EGDB 2NUTB 3EH1A 1YVNG 5A1MA 2LXXA 1DEJS 1M2VB 1AHQA 3DAWB 5DD2A 4Z94G 5IVUA 5KYYB 2VIKA 5KYXA 2FF6G 1TVJA 3CI5G 1PD1A 1UDMA 1QPVA 3EGXA 2FGHA 1HQZ1 3EFOB 1TMWA 5KYUB 4CBWG 2FH2A 2FH1A 1WM4A 1T2LA 3TU5B 3A5OS 2MV2A 5FAEA 1MDUA 1Q8GA 4KEEA 2I2QA 1H1VG 3CJBG 1D0NA 3EG9A 1C0FS 2FH3A 4PKHB 2FH4A 3A5MS 5KYWB 2MP4A 1VKKA 3EGDA 2NUTA 1NPHA 3A5NS 2L72A 2FF3A 2NUPB 1NM1G 1VFQA 4CBUG 1AK7A 5KYXB 2VILA 5KYYA 3Q2BA 1T3YA 3EGXB 1COFA 1M2OA 4CBXG 3A5LS 1EQYS 1F7SA 3FFNA 3DA7A 1D4XG 4PKIG 1T44G 5HVKD 1C0GS 1CFYA 1M4JA 2W0IA 2VACA 1SVQA 2QTVA 1P8XA 1SVYA 1J72A 1WFSA 3EG9B 1M2VA 2XF1A 5FAFA 3L50A 1ESVS 3FFKA 1WNJA 5KYNA 4PKGG 1RGIG 3CJCG 5KYWA 2LJ8A 1PCXA 3EH2A 1NLVG 2NUPA 1CNUA 2XFAA 4JD2H 3FG7A 1P8ZG 1Q8XA 1AK6A
chains in the Genus database with same CATH topology
1T3XA 2LLFA 3EFOA 1NMDG 5KYUA 2HD7A 3CIPG 5HVKB 4BEX1 2KVKA 4KEFA 2MOTA 1X67A 4LIZA 2D8BA 4KEDA 1JHWA 1PD0A 1V6FA 4S10C 3FG6A 5L6WC 1YAGG 1SVRA 1KCQA 3EGDB 2NUTB 3EH1A 1YVNG 5A1MA 2LXXA 1DEJS 1M2VB 1AHQA 3DAWB 5DD2A 4Z94G 5IVUA 5KYYB 2VIKA 5KYXA 2FF6G 1TVJA 3CI5G 1PD1A 1UDMA 1QPVA 3EGXA 2FGHA 1HQZ1 3EFOB 1TMWA 5KYUB 4CBWG 2FH2A 2FH1A 1WM4A 1T2LA 3TU5B 3A5OS 2MV2A 5FAEA 1MDUA 1Q8GA 4KEEA 2I2QA 1H1VG 3CJBG 1D0NA 3EG9A 1C0FS 2FH3A 4PKHB 2FH4A 3A5MS 5KYWB 2MP4A 1VKKA 3EGDA 2NUTA 1NPHA 3A5NS 2L72A 2FF3A 2NUPB 1NM1G 1VFQA 4CBUG 1AK7A 5KYXB 2VILA 5KYYA 3Q2BA 1T3YA 3EGXB 1COFA 1M2OA 4CBXG 3A5LS 1EQYS 1F7SA 3FFNA 3DA7A 1D4XG 4PKIG 1T44G 5HVKD 1C0GS 1CFYA 1M4JA 2W0IA 2VACA 1SVQA 2QTVA 1P8XA 1SVYA 1J72A 1WFSA 3EG9B 1M2VA 2XF1A 5FAFA 3L50A 1ESVS 3FFKA 1WNJA 5KYNA 4PKGG 1RGIG 3CJCG 5KYWA 2LJ8A 1PCXA 3EH2A 1NLVG 2NUPA 1CNUA 2XFAA 4JD2H 3FG7A 1P8ZG 1Q8XA 1AK6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T3X A;  2LLF A;  3EFO A;  1NMD G;  5KYU A;  2HD7 A;  3CIP G;  5HVK B;  4BEX 1;  2KVK A;  4KEF A;  2MOT A;  1X67 A;  4LIZ A;  2D8B A;  4KED A;  1JHW A;  1PD0 A;  1V6F A;  4S10 C;  3FG6 A;  5L6W C;  1YAG G;  1SVR A;  1KCQ A;  3EGD B;  2NUT B;  3EH1 A;  1YVN G;  5A1M A;  2LXX A;  1DEJ S;  1M2V B;  1AHQ A;  3DAW B;  5DD2 A;  4Z94 G;  5IVU A;  5KYY B;  2VIK A;  5KYX A;  2FF6 G;  1TVJ A;  3CI5 G;  1PD1 A;  1UDM A;  1QPV A;  3EGX A;  2FGH A;  1HQZ 1;  3EFO B;  1TMW A;  5KYU B;  4CBW G;  2FH2 A;  2FH1 A;  1WM4 A;  1T2L A;  3TU5 B;  3A5O S;  2MV2 A;  5FAE A;  1MDU A;  1Q8G A;  4KEE A;  2I2Q A;  1H1V G;  3CJB G;  1D0N A;  3EG9 A;  1C0F S;  2FH3 A;  4PKH B;  2FH4 A;  3A5M S;  5KYW B;  2MP4 A;  1VKK A;  3EGD A;  2NUT A;  1NPH A;  3A5N S;  2L72 A;  2FF3 A;  2NUP B;  1NM1 G;  1VFQ A;  4CBU G;  1AK7 A;  5KYX B;  2VIL A;  5KYY A;  3Q2B A;  1T3Y A;  3EGX B;  1COF A;  1M2O A;  4CBX G;  3A5L S;  1EQY S;  1F7S A;  3FFN A;  1D4X G;  4PKI G;  1T44 G;  5HVK D;  1C0G S;  1CFY A;  1M4J A;  2W0I A;  2VAC A;  1SVQ A;  2QTV A;  1P8X A;  1SVY A;  1J72 A;  1WFS A;  3EG9 B;  1M2V A;  2XF1 A;  5FAF A;  3L50 A;  1ESV S;  3FFK A;  1WNJ A;  5KYN A;  4PKG G;  1RGI G;  3CJC G;  5KYW A;  2LJ8 A;  1PCX A;  3EH2 A;  1NLV G;  2NUP A;  1CNU A;  2XFA A;  4JD2 H;  3FG7 A;  1P8Z G;  1Q8X A;  1AK6 A; 
#chains in the Genus database with same CATH topology
 1T3X A;  2LLF A;  3EFO A;  1NMD G;  5KYU A;  2HD7 A;  3CIP G;  5HVK B;  4BEX 1;  2KVK A;  4KEF A;  2MOT A;  1X67 A;  4LIZ A;  2D8B A;  4KED A;  1JHW A;  1PD0 A;  1V6F A;  4S10 C;  3FG6 A;  5L6W C;  1YAG G;  1SVR A;  1KCQ A;  3EGD B;  2NUT B;  3EH1 A;  1YVN G;  5A1M A;  2LXX A;  1DEJ S;  1M2V B;  1AHQ A;  3DAW B;  5DD2 A;  4Z94 G;  5IVU A;  5KYY B;  2VIK A;  5KYX A;  2FF6 G;  1TVJ A;  3CI5 G;  1PD1 A;  1UDM A;  1QPV A;  3EGX A;  2FGH A;  1HQZ 1;  3EFO B;  1TMW A;  5KYU B;  4CBW G;  2FH2 A;  2FH1 A;  1WM4 A;  1T2L A;  3TU5 B;  3A5O S;  2MV2 A;  5FAE A;  1MDU A;  1Q8G A;  4KEE A;  2I2Q A;  1H1V G;  3CJB G;  1D0N A;  3EG9 A;  1C0F S;  2FH3 A;  4PKH B;  2FH4 A;  3A5M S;  5KYW B;  2MP4 A;  1VKK A;  3EGD A;  2NUT A;  1NPH A;  3A5N S;  2L72 A;  2FF3 A;  2NUP B;  1NM1 G;  1VFQ A;  4CBU G;  1AK7 A;  5KYX B;  2VIL A;  5KYY A;  3Q2B A;  1T3Y A;  3EGX B;  1COF A;  1M2O A;  4CBX G;  3A5L S;  1EQY S;  1F7S A;  3FFN A;  3DA7 A;  1D4X G;  4PKI G;  1T44 G;  5HVK D;  1C0G S;  1CFY A;  1M4J A;  2W0I A;  2VAC A;  1SVQ A;  2QTV A;  1P8X A;  1SVY A;  1J72 A;  1WFS A;  3EG9 B;  1M2V A;  2XF1 A;  5FAF A;  3L50 A;  1ESV S;  3FFK A;  1WNJ A;  5KYN A;  4PKG G;  1RGI G;  3CJC G;  5KYW A;  2LJ8 A;  1PCX A;  3EH2 A;  1NLV G;  2NUP A;  1CNU A;  2XFA A;  4JD2 H;  3FG7 A;  1P8Z G;  1Q8X A;  1AK6 A; 
#chains in the Genus database with same CATH homology
 1T3X A;  2LLF A;  3EFO A;  1NMD G;  5KYU A;  2HD7 A;  3CIP G;  5HVK B;  4BEX 1;  2KVK A;  4KEF A;  2MOT A;  1X67 A;  4LIZ A;  2D8B A;  4KED A;  1JHW A;  1PD0 A;  1V6F A;  4S10 C;  3FG6 A;  5L6W C;  1YAG G;  1SVR A;  1KCQ A;  3EGD B;  2NUT B;  3EH1 A;  1YVN G;  5A1M A;  2LXX A;  1DEJ S;  1M2V B;  1AHQ A;  3DAW B;  5DD2 A;  4Z94 G;  5IVU A;  5KYY B;  2VIK A;  5KYX A;  2FF6 G;  1TVJ A;  3CI5 G;  1PD1 A;  1UDM A;  1QPV A;  3EGX A;  2FGH A;  1HQZ 1;  3EFO B;  1TMW A;  5KYU B;  4CBW G;  2FH2 A;  2FH1 A;  1WM4 A;  1T2L A;  3TU5 B;  3A5O S;  2MV2 A;  5FAE A;  1MDU A;  1Q8G A;  4KEE A;  2I2Q A;  1H1V G;  3CJB G;  1D0N A;  3EG9 A;  1C0F S;  2FH3 A;  4PKH B;  2FH4 A;  3A5M S;  5KYW B;  2MP4 A;  1VKK A;  3EGD A;  2NUT A;  1NPH A;  3A5N S;  2L72 A;  2FF3 A;  2NUP B;  1NM1 G;  1VFQ A;  4CBU G;  1AK7 A;  5KYX B;  2VIL A;  5KYY A;  3Q2B A;  1T3Y A;  3EGX B;  1COF A;  1M2O A;  4CBX G;  3A5L S;  1EQY S;  1F7S A;  3FFN A;  3DA7 A;  1D4X G;  4PKI G;  1T44 G;  5HVK D;  1C0G S;  1CFY A;  1M4J A;  2W0I A;  2VAC A;  1SVQ A;  2QTV A;  1P8X A;  1SVY A;  1J72 A;  1WFS A;  3EG9 B;  1M2V A;  2XF1 A;  5FAF A;  3L50 A;  1ESV S;  3FFK A;  1WNJ A;  5KYN A;  4PKG G;  1RGI G;  3CJC G;  5KYW A;  2LJ8 A;  1PCX A;  3EH2 A;  1NLV G;  2NUP A;  1CNU A;  2XFA A;  4JD2 H;  3FG7 A;  1P8Z G;  1Q8X A;  1AK6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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