5LG4B

Crystal structure of the sec3/sso2 complex at 2.9 angstrom resolution
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
176
structure length
174
Chain Sequence
b'MSNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein SSO2
publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Structural protein
total genus 48
structure length 174
sequence length 176
chains with identical sequence C
ec nomenclature
pdb deposition date 2016-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5lg4B00
5LG4B 3HIEA 5M4YB 3A58A
chains in the Genus database with same CATH superfamily
1U5GA 2Z14A 3MPXA 4DBBA 2YT2A 1KI1B 4WVFB 2KIEA 1AWEA 1XODA 4HB0B 2I5FA 4KHAA 4WJ7A 2NBVA 2RLOA 4D0NB 4Z2NA 3CIKA 3WA0A 5L81A 3DXCA 2Z0OA 1XCGA 2Y7BA 2IFSA 1WGUA 2ADZA 2COCA 2RRFA 5C5BB 1RRPB 1X1FA 2RVBB 2DHIA 2ELBA 1KZGA 3HSAA 3A98B 5JLJB 2EMSA 2I1JA 4GMVA 2DYQA 4K2PA 1ZM0A 1UPQA 3ULBA 5KCVA 3TO1A 2M14A 2YS3A 3DXDA 3IVFA 3T06A 1U27A 2HE7A 2LULA 4HB3B 5D3XA 1ZC3B 3U7DA 4CHJA 3VOQA 4EKUA 2COFA 5FI1A 4KAXB 3PSCA 2MDXA 4HAXB 1TJ6A 3GYPA 1BAKA 2GJYA 1EF1A 1FAOA 1NTYA 3KY9A 3BINA 1U29A 1X05A 3TFMA 2ROVA 5LONB 3NWFA 4OSNA 4YL8A 3KRXA 1BTKA 4NSWA 1Y5OA 1W1DA 4GPTB 5KQ4A 2D9XA 1M7RA 1WG7A 2GUMA 1DDVA 2Y8GA 4HB2B 1Q67A 2D9ZA 4F7UP 4Z2MB 2J0KA 2LOZA 5LG4B 1X11A 1OQNA 1TXDA 4HAUB 4EMOA 3UZTA 4GOUA 5HE1A 4IOYX 2MWNB 1ZVRA 2EMTA 3SYXA 1B55A 1I7AA 2GS0A 2KR0A 2YF0A 3CXBB 1GG3A 2DKQA 2DA0A 4XWXA 4CSQA 2YS1A 1XX0A 2LG1A 2V76A 3X23A 1H4RA 2P0HA 3PP2A 5CLQB 4L1RA 2KUQA 1OY2A 1FHXA 4HAVB 4K2OA 3WYFB 3ZDTA 3KZ1A 1V89A 3V5WA 1ISNA 3NW8A 1Z87A 2NZ8B 3F0WA 1MPHA 2PZ1A 1X86A 2LOXA 1UNQA 3NWDA 2Z0PA 5D27A 3AU4A 3A8QA 2MKRA 1UEFA 5C6RA 5EFXA 3PG7A 4GXBA 2CAYA 4GNKB 4QJ3B 1SHCA 3SV1A 2N0YA 4F7HA 5J3TA 1K5DB 3PVWA 2H7DA 1MAIA 2KCJA 2KGXB 2P0DA 2YSZA 3BJIA 3PEGA 4MK0A 2D11A 5D3VA 1X1GA 1AQCA 4IAPA 4PNKA 2QKLA 2W2XC 1DDWA 2JP2A 3A8PA 1FHWA 1DDMA 1OMWA 3TVVA 2DX5A 2Z4DA 2KIGA 3FSSA 2BCJA 2DHJA 2GCJA 4A6HA 2D9VA 1LB1A 2UZRA 3HIEA 3OANA 2RGNB 4K81A 3D8FA 1BTNA 2D9YA 4TKNA 3VIAA 4A6FA 2MFQA 2FJLA 2GCLA 1UNPA 4B6HA 2ELAA 3B77A 1ZSQA 1EAZA 4CHMA 1PLSA 3HK0A 1XR0B 3M1IB 1QC6A 5C79A 1FOEA 3RCPA 2P0FA 5D3YA 1BWNA 4PQ0A 3DCXA 4WSFA 4P7IA 3O96A 3LJUX 2KUPA 2R0DA 4YONA 1EVHA 2D2QA 1MK9B 2LKOA 5DI9B 4A6FB 1V5UA 2UVMA 1XD4A 2X18A 2DFKA 4BBKA 2K2UA 4ZRIA 3HW2B 1FHOA 3TW1A 2M38A 2CRFA 1MI1A 2K49A 2RNRB 2YS5A 1FGYA 1KZ7A 1U5DA 3ZVRA 2D10A 2W2WA 3NSUA 5FI0A 2RSGA 2ROZB 5CLLB 2YVCA 1ZC4B 2FJUB 1DYNA 2NMBA 2CODA 4D6WA 1QQGA 2W2XD 1U5FA 3PZDA 3SO6A 4GZUA 5HE2A 2DN6A 3ML4A 5IRSA 5JHHA 5JHGA 2J59M 4HAZB 2ZKMX 1N3HA 1TQZA 3HQCA 2CY5A 1V88A 1P6SA 4DIXA 1V61A 1GC6A 3PVLA 5DHFB 2VRWB 1J19A 1U2BA 1DROA 4NY0A 4DX90 1V5MA 3PVUA 2COAA 3G9WA 1UNRA 1WJ1A 2L2IA 1ZYIA 2N23A 5KQ1A 4IFSA 2IYBA 2H7EA 1T77A 5C5BA 1V5PA 4DXAB 1PMSA 1SGHA 4HB4B 2QKMA 4ZRKA 5C16A 2HTHB 4CYEA 1UPRA 1J0WA 2XQNM 2DHKA 5DIFB 5I2MA 4EJNA 1NU2A 4Y94A 2DX1A 2YT1A 1NTVA 1WI1A 2DYNA 4GN1A 2K00A 4OT1A 4MY6A 1FB8A 3AJ4A 3N7CA 4KHBA 2LYDA 3GYOA 2K8EA 5HE0A 2OTXA 2J0JA 4HAYB 5D3WA 4TYZA 2UZSA 2E2XA 3OHMB 1M7EA 1K5GB 1EGXA 3ODXA 4HATB 3P7ZA 2Z0QA 2L1CA 1I2HA 1PFJA 2EC1A 2EJ8A 4L6EA 3P6AA 4A5KA 1GC7A 2AEHA 1Y19B 1W1HA 1LW3A 1NI2A 4GMXB 2D4QA 2G35A 2YT0A 4KVGB 3ODOA 5HE3A 2ZPYA 1P5TA 3TCAA 4C0AA 4KHBB 4A6KA 3MDBC 5DHAB 1MIXA 4HHVA 1FGZA 1XKEA 2Y8FA 1E5WA 3ULCA 4HDOA 2D9WA 1U5EA 2Z59A 2DKPA 1DBHA 5J3YA 4MT7A 2AL6A 1MK7B 1IRSA 1H10A 4QJ5B 4HSIA 2I5CA 2OQBA 2RUKB 3NWAA 2Z13A 1WGQA 2CY4A 2R2YA 2K2JA 3QBVB 1WVHA 5LOPB 3U8ZA 4ZRJA 5GOWB 1W1GA 2DTCA 5J3QA 4KHOA 3KRWA 4F7GA 3D8EA 3A58A 3FEHA 3SNHA 5M4YB 4H8SA 4QXAB 2R09A 2J0MA 3DXEA 4QJ4B 2YRYA 3ODWA 4DX8A 4K17A 3U12A 4HAWB 4HDQA 2VKIA 3QWMA 1MKEA 3F5RA 3FVCA 1MIZB 3D8DA 3QIJA 3KSYA 1RJ2A 2Q13A 2VSZA 1WJMA 3FM8C 5I2SA 5DH9B 5JP4A 2I1KA 3AU5A 3SUZA 2DLWA 2P8VA 1P3RA
chains in the Genus database with same CATH topology
4GNKB 4QJ3B 4PQ0A 4DIXA 2Z14A 4L1RA 2KUQA 2YT2A 4GOUA 2KIEA 2Z59A 3FVCA 3GYPA 4CSQA 4KHOA 4IOYX 5I2MA 2GCLA 3NW8A 2FJUB 2GUMA 3A58A 4KHAA 4D6WA 2NBVA 2KR0A 4Z2NA 1ZYIA 3TO1A 4QJ5B 5I2SA 5M4YB 4HSIA 4OT1A 4IFSA 4QXAB 3NWAA 3NWDA 3TVVA 2Z13A 4KHBA 2Z4DA 2R2YA 3GYOA 4Z2MB 2KIGA 2K8EA 5IRSA 3FSSA 5LG4B 2GCJA 2RRFA 4KHBB 3TW1A 2ZKMX 3NWFA 3OHMB 4OSNA 4QJ4B 2K49A 3HIEA 3U12A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LG4 B;  3HIE A;  5M4Y B;  3A58 A; 
#chains in the Genus database with same CATH topology
 1U5G A;  2Z14 A;  3MPX A;  4DBB A;  2YT2 A;  1KI1 B;  4WVF B;  2KIE A;  1AWE A;  1XOD A;  4HB0 B;  2I5F A;  4KHA A;  4WJ7 A;  2NBV A;  2RLO A;  4D0N B;  4Z2N A;  3CIK A;  3WA0 A;  5L81 A;  3DXC A;  2Z0O A;  1XCG A;  2Y7B A;  2IFS A;  1WGU A;  2ADZ A;  2COC A;  2RRF A;  5C5B B;  1RRP B;  1X1F A;  2RVB B;  2DHI A;  2ELB A;  1KZG A;  3HSA A;  3A98 B;  5JLJ B;  2EMS A;  2I1J A;  4GMV A;  2DYQ A;  4K2P A;  1ZM0 A;  1UPQ A;  3ULB A;  5KCV A;  3TO1 A;  2M14 A;  2YS3 A;  3DXD A;  3IVF A;  3T06 A;  1U27 A;  2HE7 A;  2LUL A;  4HB3 B;  5D3X A;  1ZC3 B;  3U7D A;  4CHJ A;  3VOQ A;  4EKU A;  2COF A;  5FI1 A;  4KAX B;  3PSC A;  2MDX A;  4HAX B;  1TJ6 A;  3GYP A;  1BAK A;  2GJY A;  1EF1 A;  1FAO A;  1NTY A;  3KY9 A;  3BIN A;  1U29 A;  1X05 A;  3TFM A;  2ROV A;  5LON B;  3NWF A;  4OSN A;  4YL8 A;  3KRX A;  1BTK A;  4NSW A;  1Y5O A;  1W1D A;  4GPT B;  5KQ4 A;  2D9X A;  1M7R A;  1WG7 A;  2GUM A;  1DDV A;  2Y8G A;  4HB2 B;  1Q67 A;  2D9Z A;  4F7U P;  4Z2M B;  2J0K A;  2LOZ A;  5LG4 B;  1X11 A;  1OQN A;  1TXD A;  4HAU B;  4EMO A;  3UZT A;  4GOU A;  5HE1 A;  4IOY X;  2MWN B;  1ZVR A;  2EMT A;  3SYX A;  1B55 A;  1I7A A;  2GS0 A;  2KR0 A;  2YF0 A;  3CXB B;  1GG3 A;  2DKQ A;  2DA0 A;  4XWX A;  4CSQ A;  2YS1 A;  1XX0 A;  2LG1 A;  2V76 A;  3X23 A;  1H4R A;  2P0H A;  3PP2 A;  5CLQ B;  4L1R A;  2KUQ A;  1OY2 A;  1FHX A;  4HAV B;  4K2O A;  3WYF B;  3ZDT A;  3KZ1 A;  1V89 A;  3V5W A;  1ISN A;  3NW8 A;  1Z87 A;  2NZ8 B;  3F0W A;  1MPH A;  2PZ1 A;  1X86 A;  2LOX A;  1UNQ A;  3NWD A;  2Z0P A;  5D27 A;  3AU4 A;  3A8Q A;  2MKR A;  1UEF A;  5C6R A;  5EFX A;  3PG7 A;  4GXB A;  2CAY A;  4GNK B;  4QJ3 B;  1SHC A;  3SV1 A;  2N0Y A;  4F7H A;  5J3T A;  1K5D B;  3PVW A;  2H7D A;  1MAI A;  2KCJ A;  2KGX B;  2P0D A;  2YSZ A;  3BJI A;  3PEG A;  4MK0 A;  2D11 A;  5D3V A;  1X1G A;  1AQC A;  4IAP A;  4PNK A;  2QKL A;  2W2X C;  1DDW A;  2JP2 A;  3A8P A;  1FHW A;  1DDM A;  1OMW A;  3TVV A;  2DX5 A;  2Z4D A;  2KIG A;  3FSS A;  2BCJ A;  2DHJ A;  2GCJ A;  4A6H A;  2D9V A;  1LB1 A;  2UZR A;  3HIE A;  3OAN A;  2RGN B;  4K81 A;  3D8F A;  1BTN A;  2D9Y A;  4TKN A;  3VIA A;  4A6F A;  2MFQ A;  2FJL A;  2GCL A;  1UNP A;  4B6H A;  2ELA A;  3B77 A;  1ZSQ A;  1EAZ A;  4CHM A;  1PLS A;  3HK0 A;  1XR0 B;  3M1I B;  1QC6 A;  5C79 A;  1FOE A;  3RCP A;  2P0F A;  5D3Y A;  1BWN A;  4PQ0 A;  3DCX A;  4WSF A;  4P7I A;  3O96 A;  3LJU X;  2KUP A;  2R0D A;  4YON A;  1EVH A;  2D2Q A;  1MK9 B;  2LKO A;  5DI9 B;  4A6F B;  1V5U A;  2UVM A;  1XD4 A;  2X18 A;  2DFK A;  4BBK A;  2K2U A;  4ZRI A;  3HW2 B;  1FHO A;  3TW1 A;  2M38 A;  2CRF A;  1MI1 A;  2K49 A;  2RNR B;  2YS5 A;  1FGY A;  1KZ7 A;  1U5D A;  3ZVR A;  2D10 A;  2W2W A;  3NSU A;  5FI0 A;  2RSG A;  2ROZ B;  5CLL B;  2YVC A;  1ZC4 B;  2FJU B;  1DYN A;  2NMB A;  2COD A;  4D6W A;  1QQG A;  2W2X D;  1U5F A;  3PZD A;  3SO6 A;  4GZU A;  5HE2 A;  2DN6 A;  3ML4 A;  5IRS A;  5JHH A;  5JHG A;  2J59 M;  4HAZ B;  2ZKM X;  1N3H A;  1TQZ A;  3HQC A;  2CY5 A;  1V88 A;  1P6S A;  4DIX A;  1V61 A;  1GC6 A;  3PVL A;  5DHF B;  2VRW B;  1J19 A;  1U2B A;  1DRO A;  4NY0 A;  4DX9 0;  1V5M A;  3PVU A;  2COA A;  3G9W A;  1UNR A;  1WJ1 A;  2L2I A;  1ZYI A;  2N23 A;  5KQ1 A;  4IFS A;  2IYB A;  2H7E A;  1T77 A;  5C5B A;  1V5P A;  4DXA B;  1PMS A;  1SGH A;  4HB4 B;  2QKM A;  4ZRK A;  5C16 A;  2HTH B;  4CYE A;  1UPR A;  1J0W A;  2XQN M;  2DHK A;  5DIF B;  5I2M A;  4EJN A;  1NU2 A;  4Y94 A;  2DX1 A;  2YT1 A;  1NTV A;  1WI1 A;  2DYN A;  4GN1 A;  2K00 A;  4OT1 A;  4MY6 A;  1FB8 A;  3AJ4 A;  3N7C A;  4KHB A;  2LYD A;  3GYO A;  2K8E A;  5HE0 A;  2OTX A;  2J0J A;  4HAY B;  5D3W A;  4TYZ A;  2UZS A;  2E2X A;  3OHM B;  1M7E A;  1K5G B;  1EGX A;  3ODX A;  4HAT B;  3P7Z A;  2Z0Q A;  2L1C A;  1I2H A;  1PFJ A;  2EC1 A;  2EJ8 A;  4L6E A;  3P6A A;  4A5K A;  1GC7 A;  2AEH A;  1Y19 B;  1W1H A;  1LW3 A;  1NI2 A;  4GMX B;  2D4Q A;  2G35 A;  2YT0 A;  4KVG B;  3ODO A;  5HE3 A;  2ZPY A;  1P5T A;  3TCA A;  4C0A A;  4KHB B;  4A6K A;  3MDB C;  5DHA B;  1MIX A;  4HHV A;  1FGZ A;  1XKE A;  2Y8F A;  1E5W A;  3ULC A;  4HDO A;  2D9W A;  1U5E A;  2Z59 A;  2DKP A;  1DBH A;  5J3Y A;  4MT7 A;  2AL6 A;  1MK7 B;  1IRS A;  1H10 A;  4QJ5 B;  4HSI A;  2I5C A;  2OQB A;  2RUK B;  3NWA A;  2Z13 A;  1WGQ A;  2CY4 A;  2R2Y A;  2K2J A;  3QBV B;  1WVH A;  5LOP B;  3U8Z A;  4ZRJ A;  5GOW B;  1W1G A;  2DTC A;  5J3Q A;  4KHO A;  3KRW A;  4F7G A;  3D8E A;  3A58 A;  3FEH A;  3SNH A;  5M4Y B;  4H8S A;  4QXA B;  2R09 A;  2J0M A;  3DXE A;  4QJ4 B;  2YRY A;  3ODW A;  4DX8 A;  4K17 A;  3U12 A;  4HAW B;  4HDQ A;  2VKI A;  3QWM A;  1MKE A;  3F5R A;  3FVC A;  1MIZ B;  3D8D A;  3QIJ A;  3KSY A;  1RJ2 A;  2Q13 A;  2VSZ A;  1WJM A;  3FM8 C;  5I2S A;  5DH9 B;  5JP4 A;  2I1K A;  3AU5 A;  3SUZ A;  2DLW A;  2P8V A;  1P3R A; 
#chains in the Genus database with same CATH homology
 4GNK B;  4QJ3 B;  4PQ0 A;  4DIX A;  2Z14 A;  4L1R A;  2KUQ A;  2YT2 A;  4GOU A;  2KIE A;  2Z59 A;  3FVC A;  3GYP A;  4CSQ A;  4KHO A;  4IOY X;  5I2M A;  2GCL A;  3NW8 A;  2FJU B;  2GUM A;  3A58 A;  4KHA A;  4D6W A;  2NBV A;  2KR0 A;  4Z2N A;  1ZYI A;  3TO1 A;  4QJ5 B;  5I2S A;  5M4Y B;  4HSI A;  4OT1 A;  4IFS A;  4QXA B;  3NWA A;  3NWD A;  3TVV A;  2Z13 A;  4KHB A;  2Z4D A;  2R2Y A;  3GYO A;  4Z2M B;  2KIG A;  2K8E A;  5IRS A;  3FSS A;  5LG4 B;  2GCJ A;  2RRF A;  4KHB B;  3TW1 A;  2ZKM X;  3NWF A;  3OHM B;  4OSN A;  4QJ4 B;  2K49 A;  3HIE A;  3U12 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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