5LG4B

Crystal structure of the sec3/sso2 complex at 2.9 angstrom resolution
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
176
structure length
174
Chain Sequence
MSNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein SSO2
publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Structural protein
total genus 48
structure length 174
sequence length 176
chains with identical sequence C
ec nomenclature
pdb deposition date 2016-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5lg4B00
3A58A 5LG4B 3HIEA 5M4YB
chains in the Genus database with same CATH superfamily
1Y5OA 2D9YA 2K2UA 1V88A 5EFXA 4F7GA 4Y94A 5D27A 2XQNM 2KIGA 5L81A 3A8PA 4IFSA 1ZC3B 2DX1A 2RRFA 4DX90 2AL6A 2P8VA 2LG1A 3KRXA 2D4QA 1NI2A 5LONB 1H4RA 4XWXA 2RUKB 5HE2A 2EC1A 1KZGA 2RLOA 2LKOA 3ZDTA 1U5FA 4HAWB 2AEHA 1N3HA 1MPHA 1U29A 5D3VA 2YS3A 2NZ8B 2ZKMX 2Y7BA 2P0FA 5IRSA 2Z4DA 2K8EA 4HAVB 1XCGA 2H7EA 3SO6A 3VIAA 2OQBA 2JP2A 3MPXA 1TXDA 2DA0A 5C16A 4NY0A 3AU4A 1V5PA 4K81A 2COFA 1UNRA 2COAA 2N23A 1WG7A 2GCJA 1MAIA 2UZSA 5JP4A 3ODWA 2DFKA 2LYDA 4ZRJA 2J0JA 3DXCA 1XD4A 2MWNB 4MY6A 2Z0QA 5C5BA 1XX0A 2QKMA 2W2WA 3TW1A 2YS1A 4ZRIA 3A8QA 2DYNA 4HAZB 1H10A 3KSYA 2L1CA 3PSCA 2N0YA 4DX8A 1AQCA 1QQGA 4A5KA 3D8FA 2D2QA 1P6SA 5JHHA 4QJ5B 3AJ4A 3U7DA 3FVCA 2W2XC 3MDBC 1OQNA 3SYXA 4P7IA 4QJ3B 2DTCA 4EJNA 3GYOA 1Z87A 2KUQA 4L1RA 1MKEA 3DXEA 1RRPB 1M7RA 3V5WA 4CHJA 2KGXB 3DXDA 3FSSA 1FGYA 3NW8A 3OANA 3X23A 3TCAA 2W2XD 4K17A 2GS0A 2IFSA 1DROA 1FHXA 3CXBB 1E5WA 4HHVA 3PVLA 1DDWA 1WJ1A 1P3RA 2LOXA 4HAYB 2UZRA 1X05A 3IVFA 4KHOA 5HE3A 1PLSA 3NWDA 5DHFB 4A6HA 2ROZB 3NSUA 3PP2A 3N7CA 2QKLA 3FM8C 2DYQA 2Q13A 2Z59A 1MK7B 2VSZA 2ROVA 3VOQA 4GMXB 5CLQB 1V89A 2I1KA 2OTXA 4HATB 1XKEA 2RNRB 3BINA 2CY4A 3TVVA 2MKRA 4MK0A 1T77A 2K00A 4DBBA 1W1GA 1WGUA 2GCLA 3ODXA 3PZDA 2DHJA 5HE1A 1UPQA 2MFQA 1K5DB 1J19A 1XODA 2D9VA 2P0DA 2R0DA 4YONA 4CSQA 2ELBA 4HDOA 1FOEA 3NWAA 5C5BB 1BTNA 1UEFA 2HTHB 1MK9B 1X86A 1EGXA 3ULCA 2RVBB 5GOWB 1FB8A 1DBHA 1Q67A 1V5MA 3DCXA 2DKQA 3TFMA 4IOYX 4EKUA 4K2OA 3NWFA 5I2MA 2VKIA 4HB3B 5JLJB 1ZM0A 5FI1A 4Z2MB 1UNPA 2DLWA 1OMWA 4HB2B 2CY5A 1EVHA 1SHCA 3D8EA 2ELAA 1V5UA 2IYBA 4GOUA 1J0WA 5D3WA 1EF1A 3OHMB 2DKPA 4ZRKA 1K5GB 3RCPA 3P7ZA 1WI1A 2EJ8A 4EMOA 4HB0B 2GJYA 2YT0A 2DX5A 3FEHA 2M14A 4KVGB 1W1DA 1XR0B 1SGHA 2YS5A 3SV1A 3A58A 2L2IA 5FI0A 1U5EA 2GUMA 3HSAA 3CIKA 3P6AA 1RJ2A 2PZ1A 4F7UP 4D6WA 1OY2A 1PFJA 4KAXB 2Z14A 2FJLA 1ZSQA 2MDXA 2EMSA 3UZTA 3LJUX 3KRWA 4KHAA 1ZC4B 4KHBA 2J0MA 1NU2A 4C0AA 2Z0PA 5I2SA 3WYFB 4BBKA 4HAXB 2FJUB 3KY9A 3PEGA 5LOPB 2I5FA 3D8DA 4Z2NA 2D9ZA 3O96A 3HK0A 4OT1A 2K2JA 2YVCA 2I1JA 2ZPYA 3PVUA 4GNKB 1MI1A 2V76A 2RSGA 3U12A 5KCVA 2COCA 1M7EA 2KUPA 1P5TA 3T06A 3QIJA 4TYZA 2J59M 3M1IB 4HAUB 1ZVRA 1TQZA 4H8SA 3SNHA 1NTVA 2D9WA 5KQ1A 5DH9B 3GYPA 4L6EA 4TKNA 5M4YB 2YT1A 4GN1A 1X1FA 2YT2A 2DN6A 2I5CA 2HE7A 4YL8A 5KQ4A 4A6KA 4K2PA 4QXAB 1U5GA 1W1HA 3G9WA 4DXAB 1GG3A 4GMVA 4IAPA 3ULBA 3TO1A 1DYNA 3BJIA 1BTKA 5J3QA 2KR0A 2EMTA 2G35A 2BCJA 2VRWB 1WVHA 4B6HA 1X11A 3ZVRA 4KHBB 1V61A 2K49A 1MIZB 3AU5A 4MT7A 1IRSA 2Y8GA 2ADZA 3PVWA 5D3XA 4CYEA 3A98B 2CRFA 1ISNA 2LOZA 1ZYIA 3WA0A 5C79A 3QBVB 2NBVA 5CLLB 5DHAB 1WGQA 2LULA 4HSIA 2M38A 2Y8FA 1U27A 1QC6A 2KCJA 4PNKA 4F7HA 1B55A 2D11A 5LG4B 2YF0A 1I2HA 1DDMA 1GC7A 1LB1A 1DDVA 3B77A 2CAYA 1KI1B 4WSFA 4OSNA 2Z0OA 4CHMA 3F5RA 1FHOA 5DIFB 4PQ0A 1U5DA 3HW2B 1FGZA 2J0KA 5J3YA 1AWEA 1FAOA 1BAKA 2DHKA 4A6FB 2R09A 4D0NB 3U8ZA 1WJMA 3ODOA 1NTYA 2P0HA 2DHIA 2H7DA 3HQCA 5D3YA 2YRYA 1BWNA 2UVMA 2X18A 4HB4B 5J3TA 5JHGA 3ML4A 2D9XA 2NMBA 1MIXA 3QWMA 2RGNB 3F0WA 3KZ1A 4NSWA 4HDQA 1I7AA 3PG7A 1KZ7A 1X1GA 1PMSA 1U2BA 2D10A 5DI9B 4GZUA 1Y19B 4WJ7A 4WVFB 5C6RA 1UNQA 2KIEA 1UPRA 1FHWA 3SUZA 2CODA 4GPTB 4DIXA 3HIEA 1GC6A 4GXBA 2Z13A 2YSZA 2E2XA 4A6FA 1EAZA 5HE0A 1LW3A 4QJ4B 2R2YA 1TJ6A
chains in the Genus database with same CATH topology
3TVVA 1ZYIA 4QXAB 2GUMA 2NBVA 4GOUA 2KIEA 2FJUB 2GCLA 4HSIA 4IOYX 4D6WA 4PQ0A 3NWFA 5I2MA 4QJ5B 2KIGA 3GYPA 3OHMB 4Z2NA 4KHOA 3FVCA 3TO1A 2Z14A 4IFSA 3NWDA 4DIXA 2GCJA 3HIEA 5LG4B 4QJ3B 4Z2MB 2KR0A 2Z13A 2RRFA 5M4YB 4OT1A 3GYOA 2ZKMX 4KHAA 2Z59A 2KUQA 4KHBB 4GNKB 4KHBA 2K49A 4L1RA 3NWAA 4CSQA 5IRSA 2Z4DA 2YT2A 3FSSA 3NW8A 2K8EA 3TW1A 3U12A 4QJ4B 2R2YA 5I2SA 3A58A 4OSNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A58 A;  5LG4 B;  3HIE A;  5M4Y B; 
#chains in the Genus database with same CATH topology
 1Y5O A;  2D9Y A;  2K2U A;  1V88 A;  5EFX A;  4F7G A;  4Y94 A;  5D27 A;  2XQN M;  2KIG A;  5L81 A;  3A8P A;  4IFS A;  1ZC3 B;  2DX1 A;  2RRF A;  4DX9 0;  2AL6 A;  2P8V A;  2LG1 A;  3KRX A;  2D4Q A;  1NI2 A;  5LON B;  1H4R A;  4XWX A;  2RUK B;  5HE2 A;  2EC1 A;  1KZG A;  2RLO A;  2LKO A;  3ZDT A;  1U5F A;  4HAW B;  2AEH A;  1N3H A;  1MPH A;  1U29 A;  5D3V A;  2YS3 A;  2NZ8 B;  2ZKM X;  2Y7B A;  2P0F A;  5IRS A;  2Z4D A;  2K8E A;  4HAV B;  1XCG A;  2H7E A;  3SO6 A;  3VIA A;  2OQB A;  2JP2 A;  3MPX A;  1TXD A;  2DA0 A;  5C16 A;  4NY0 A;  3AU4 A;  1V5P A;  4K81 A;  2COF A;  1UNR A;  2COA A;  2N23 A;  1WG7 A;  2GCJ A;  1MAI A;  2UZS A;  5JP4 A;  3ODW A;  2DFK A;  2LYD A;  4ZRJ A;  2J0J A;  3DXC A;  1XD4 A;  2MWN B;  4MY6 A;  2Z0Q A;  5C5B A;  1XX0 A;  2QKM A;  2W2W A;  3TW1 A;  2YS1 A;  4ZRI A;  3A8Q A;  2DYN A;  4HAZ B;  1H10 A;  3KSY A;  2L1C A;  3PSC A;  2N0Y A;  4DX8 A;  1AQC A;  1QQG A;  4A5K A;  3D8F A;  2D2Q A;  1P6S A;  5JHH A;  4QJ5 B;  3AJ4 A;  3U7D A;  3FVC A;  2W2X C;  3MDB C;  1OQN A;  3SYX A;  4P7I A;  4QJ3 B;  2DTC A;  4EJN A;  3GYO A;  1Z87 A;  2KUQ A;  4L1R A;  1MKE A;  3DXE A;  1RRP B;  1M7R A;  3V5W A;  4CHJ A;  2KGX B;  3DXD A;  3FSS A;  1FGY A;  3NW8 A;  3OAN A;  3X23 A;  3TCA A;  2W2X D;  4K17 A;  2GS0 A;  2IFS A;  1DRO A;  1FHX A;  3CXB B;  1E5W A;  4HHV A;  3PVL A;  1DDW A;  1WJ1 A;  1P3R A;  2LOX A;  4HAY B;  2UZR A;  1X05 A;  3IVF A;  4KHO A;  5HE3 A;  1PLS A;  3NWD A;  5DHF B;  4A6H A;  2ROZ B;  3NSU A;  3PP2 A;  3N7C A;  2QKL A;  3FM8 C;  2DYQ A;  2Q13 A;  2Z59 A;  1MK7 B;  2VSZ A;  2ROV A;  3VOQ A;  4GMX B;  5CLQ B;  1V89 A;  2I1K A;  2OTX A;  4HAT B;  1XKE A;  2RNR B;  3BIN A;  2CY4 A;  3TVV A;  2MKR A;  4MK0 A;  1T77 A;  2K00 A;  4DBB A;  1W1G A;  1WGU A;  2GCL A;  3ODX A;  3PZD A;  2DHJ A;  5HE1 A;  1UPQ A;  2MFQ A;  1K5D B;  1J19 A;  1XOD A;  2D9V A;  2P0D A;  2R0D A;  4YON A;  4CSQ A;  2ELB A;  4HDO A;  1FOE A;  3NWA A;  5C5B B;  1BTN A;  1UEF A;  2HTH B;  1MK9 B;  1X86 A;  1EGX A;  3ULC A;  2RVB B;  5GOW B;  1FB8 A;  1DBH A;  1Q67 A;  1V5M A;  3DCX A;  2DKQ A;  3TFM A;  4IOY X;  4EKU A;  4K2O A;  3NWF A;  5I2M A;  2VKI A;  4HB3 B;  5JLJ B;  1ZM0 A;  5FI1 A;  4Z2M B;  1UNP A;  2DLW A;  1OMW A;  4HB2 B;  2CY5 A;  1EVH A;  1SHC A;  3D8E A;  2ELA A;  1V5U A;  2IYB A;  4GOU A;  1J0W A;  5D3W A;  1EF1 A;  3OHM B;  2DKP A;  4ZRK A;  1K5G B;  3RCP A;  3P7Z A;  1WI1 A;  2EJ8 A;  4EMO A;  4HB0 B;  2GJY A;  2YT0 A;  2DX5 A;  3FEH A;  2M14 A;  4KVG B;  1W1D A;  1XR0 B;  1SGH A;  2YS5 A;  3SV1 A;  3A58 A;  2L2I A;  5FI0 A;  1U5E A;  2GUM A;  3HSA A;  3CIK A;  3P6A A;  1RJ2 A;  2PZ1 A;  4F7U P;  4D6W A;  1OY2 A;  1PFJ A;  4KAX B;  2Z14 A;  2FJL A;  1ZSQ A;  2MDX A;  2EMS A;  3UZT A;  3LJU X;  3KRW A;  4KHA A;  1ZC4 B;  4KHB A;  2J0M A;  1NU2 A;  4C0A A;  2Z0P A;  5I2S A;  3WYF B;  4BBK A;  4HAX B;  2FJU B;  3KY9 A;  3PEG A;  5LOP B;  2I5F A;  3D8D A;  4Z2N A;  2D9Z A;  3O96 A;  3HK0 A;  4OT1 A;  2K2J A;  2YVC A;  2I1J A;  2ZPY A;  3PVU A;  4GNK B;  1MI1 A;  2V76 A;  2RSG A;  3U12 A;  5KCV A;  2COC A;  1M7E A;  2KUP A;  1P5T A;  3T06 A;  3QIJ A;  4TYZ A;  2J59 M;  3M1I B;  4HAU B;  1ZVR A;  1TQZ A;  4H8S A;  3SNH A;  1NTV A;  2D9W A;  5KQ1 A;  5DH9 B;  3GYP A;  4L6E A;  4TKN A;  5M4Y B;  2YT1 A;  4GN1 A;  1X1F A;  2YT2 A;  2DN6 A;  2I5C A;  2HE7 A;  4YL8 A;  5KQ4 A;  4A6K A;  4K2P A;  4QXA B;  1U5G A;  1W1H A;  3G9W A;  4DXA B;  1GG3 A;  4GMV A;  4IAP A;  3ULB A;  3TO1 A;  1DYN A;  3BJI A;  1BTK A;  5J3Q A;  2KR0 A;  2EMT A;  2G35 A;  2BCJ A;  2VRW B;  1WVH A;  4B6H A;  1X11 A;  3ZVR A;  4KHB B;  1V61 A;  2K49 A;  1MIZ B;  3AU5 A;  4MT7 A;  1IRS A;  2Y8G A;  2ADZ A;  3PVW A;  5D3X A;  4CYE A;  3A98 B;  2CRF A;  1ISN A;  2LOZ A;  1ZYI A;  3WA0 A;  5C79 A;  3QBV B;  2NBV A;  5CLL B;  5DHA B;  1WGQ A;  2LUL A;  4HSI A;  2M38 A;  2Y8F A;  1U27 A;  1QC6 A;  2KCJ A;  4PNK A;  4F7H A;  1B55 A;  2D11 A;  5LG4 B;  2YF0 A;  1I2H A;  1DDM A;  1GC7 A;  1LB1 A;  1DDV A;  3B77 A;  2CAY A;  1KI1 B;  4WSF A;  4OSN A;  2Z0O A;  4CHM A;  3F5R A;  1FHO A;  5DIF B;  4PQ0 A;  1U5D A;  3HW2 B;  1FGZ A;  2J0K A;  5J3Y A;  1AWE A;  1FAO A;  1BAK A;  2DHK A;  4A6F B;  2R09 A;  4D0N B;  3U8Z A;  1WJM A;  3ODO A;  1NTY A;  2P0H A;  2DHI A;  2H7D A;  3HQC A;  5D3Y A;  2YRY A;  1BWN A;  2UVM A;  2X18 A;  4HB4 B;  5J3T A;  5JHG A;  3ML4 A;  2D9X A;  2NMB A;  1MIX A;  3QWM A;  2RGN B;  3F0W A;  3KZ1 A;  4NSW A;  4HDQ A;  1I7A A;  3PG7 A;  1KZ7 A;  1X1G A;  1PMS A;  1U2B A;  2D10 A;  5DI9 B;  4GZU A;  1Y19 B;  4WJ7 A;  4WVF B;  5C6R A;  1UNQ A;  2KIE A;  1UPR A;  1FHW A;  3SUZ A;  2COD A;  4GPT B;  4DIX A;  3HIE A;  1GC6 A;  4GXB A;  2Z13 A;  2YSZ A;  2E2X A;  4A6F A;  1EAZ A;  5HE0 A;  1LW3 A;  4QJ4 B;  2R2Y A;  1TJ6 A; 
#chains in the Genus database with same CATH homology
 3TVV A;  1ZYI A;  4QXA B;  2GUM A;  2NBV A;  4GOU A;  2KIE A;  2FJU B;  2GCL A;  4HSI A;  4IOY X;  4D6W A;  4PQ0 A;  3NWF A;  5I2M A;  4QJ5 B;  2KIG A;  3GYP A;  3OHM B;  4Z2N A;  4KHO A;  3FVC A;  3TO1 A;  2Z14 A;  4IFS A;  3NWD A;  4DIX A;  2GCJ A;  3HIE A;  5LG4 B;  4QJ3 B;  4Z2M B;  2KR0 A;  2Z13 A;  2RRF A;  5M4Y B;  4OT1 A;  3GYO A;  2ZKM X;  4KHA A;  2Z59 A;  2KUQ A;  4KHB B;  4GNK B;  4KHB A;  2K49 A;  4L1R A;  3NWA A;  4CSQ A;  5IRS A;  2Z4D A;  2YT2 A;  3FSS A;  3NW8 A;  2K8E A;  3TW1 A;  3U12 A;  4QJ4 B;  2R2Y A;  5I2S A;  3A58 A;  4OSN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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