5LG4B

Crystal structure of the sec3/sso2 complex at 2.9 angstrom resolution
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
176
structure length
174
Chain Sequence
MSNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Structural protein
molecule keywords Protein SSO2
total genus 48
structure length 174
sequence length 176
chains with identical sequence C
ec nomenclature
pdb deposition date 2016-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5lg4B00
5LG4B 3A58A 5M4YB 3HIEA
chains in the Genus database with same CATH superfamily
1U5GA 5EFXA 2YF0A 2Z4DA 1NU2A 3F5RA 1FHWA 2R2YA 3VOQA 4NY0A 4IOYX 5FI0A 4GN1A 4YONA 2HTHB 1U29A 1UPRA 2N0YA 1EAZA 2GUMA 2P8VA 2RLOA 4XWXA 2R0DA 2YT2A 3ZDTA 3OANA 1DDVA 5DIFB 4L1RA 4F7GA 1SHCA 1B55A 3PVWA 4KVGB 3QBVB 4KAXB 1TXDA 3DXCA 1E5WA 1KI1B 5KQ1A 2VRWB 3MPXA 1KZGA 3BJIA 3P7ZA 4IFSA 3ULCA 2KGXB 2MWNB 4K17A 4DX8A 1MKEA 1WGQA 2MKRA 2LOXA 4GMVA 3OHMB 3KRXA 2H7DA 3FSSA 4WJ7A 3KRWA 4EJNA 1OMWA 4HAVB 4A5KA 2D9VA 1M7EA 3PSCA 4Z2MB 1FOEA 2G35A 2E2XA 2W2XC 4B6HA 1PFJA 1NI2A 3O96A 1PLSA 3A98B 5C5BB 2Z0PA 2K00A 4HB0B 5J3TA 2D9YA 2COAA 5HE0A 1MPHA 2M14A 2KR0A 4GOUA 1RJ2A 2I5CA 2J59M 1PMSA 1M7RA 1FHOA 3U12A 4QJ5B 3PP2A 1V5PA 2EMTA 2KUPA 1GC7A 1U2BA 2P0HA 2K8EA 1Y19B 2V76A 2M38A 4TYZA 4Y94A 2DTCA 4HAXB 5CLLB 5LG4B 4QJ4B 1U5EA 2J0JA 4F7HA 1FGZA 2CODA 4QXAB 5GOWB 4C0AA 1AWEA 3HIEA 4L6EA 4GNKB 3ULBA 2J0KA 1EF1A 1V5UA 3DCXA 3SV1A 2DA0A 1BAKA 4PQ0A 3ML4A 5DHFB 2GS0A 2UVMA 1W1GA 1KZ7A 2QKLA 2Q13A 2ZPYA 4A6KA 3HSAA 5LOPB 1V61A 1FAOA 4HDQA 1MI1A 1MAIA 4HAYB 2DX5A 4DX90 1WI1A 3UZTA 2IYBA 2R09A 2D2QA 4HATB 1XD4A 1H4RA 3BINA 3D8EA 2CAYA 2EC1A 3U7DA 1GC6A 3VIAA 1X11A 1IRSA 4OT1A 1DYNA 2LOZA 3B77A 4HB2B 3D8FA 1U5FA 2ROVA 2AL6A 1MIXA 3TVVA 5JHHA 5C16A 2K2JA 5J3YA 2YS1A 2DKPA 3X23A 3FM8C 3LJUX 4OSNA 3NW8A 3NWAA 2DX1A 1XR0B 2NBVA 4HSIA 1FB8A 5LONB 2NZ8B 3PEGA 3AU5A 1DROA 2DLWA 1X1GA 1BTNA 4GZUA 3G9WA 4A6FA 1I2HA 3TO1A 1UNPA 2YVCA 1XX0A 2COFA 2GCJA 4TKNA 3PVLA 3KY9A 3M1IB 1H10A 2MDXA 2DHJA 2FJLA 3RCPA 2Y8GA 3FVCA 3FEHA 3U8ZA 3HK0A 1WG7A 2DHIA 5KCVA 1BWNA 2GCLA 4GXBA 5DI9B 2CY4A 1T77A 3NWFA 3P6AA 3CIKA 2RSGA 4CHMA 3N7CA 2ADZA 3PG7A 1UNQA 4PNKA 4HB4B 4KHBB 5L81A 1XCGA 3KSYA 3GYPA 2GJYA 1J0WA 5D3YA 2P0FA 5C79A 3KZ1A 2ELAA 2DKQA 1RRPB 1K5DB 4IAPA 3D8DA 2KUQA 2DYNA 5HE2A 3PVUA 2DFKA 5CLQB 5FI1A 1ZYIA 2KIGA 2J0MA 2RNRB 4Z2NA 1OY2A 3A8QA 4GPTB 5HE1A 5JLJB 1I7AA 1MK9B 1WVHA 2LYDA 2YS5A 1ISNA 3NSUA 2EJ8A 1P6SA 5D3WA 2KIEA 1P5TA 1Q67A 4GMXB 1EVHA 2UZSA 2RGNB 1TJ6A 3ODWA 4K2OA 4DIXA 4ZRKA 4CYEA 3NWDA 2YSZA 2LKOA 1QC6A 2XQNM 1AQCA 1V89A 2KCJA 1V88A 1NTYA 4BBKA 1WGUA 2DHKA 4WVFB 3SO6A 1BTKA 3PZDA 3T06A 1X1FA 3SNHA 1FHXA 3WA0A 5IRSA 5M4YB 1UPQA 1FGYA 5JP4A 3DXDA 4HHVA 2D11A 3DXEA 5DHAB 1ZVRA 2L1CA 1K5GB 1Y5OA 4MY6A 3GYOA 2ELBA 1LB1A 2ZKMX 3AJ4A 5JHGA 3ODXA 2JP2A 2L2IA 4A6FB 2K2UA 4D0NB 4MT7A 5DH9B 1EGXA 2Z0QA 2N23A 3WYFB 2DYQA 4K2PA 3HW2B 4KHAA 2DN6A 1NTVA 3SYXA 5KQ4A 4KHOA 2LG1A 4DBBA 1LW3A 4YL8A 2Z14A 1UNRA 1X05A 1QQGA 2I5FA 5C5BA 1MK7B 4ZRJA 3TFMA 4MK0A 2EMSA 1X86A 2D9XA 5C6RA 2H7EA 5D3XA 2UZRA 4DXAB 4HAZB 2VSZA 1UEFA 1W1DA 2D9WA 2HE7A 2YT0A 4HDOA 5D27A 2RUKB 2W2WA 3A58A 3A8PA 4ZRIA 1U5DA 2I1KA 1P3RA 1MIZB 1W1HA 3QIJA 1SGHA 4F7UP 4KHBA 3IVFA 4WSFA 3QWMA 3SUZA 1OQNA 1TQZA 2YS3A 2OTXA 5I2SA 2CRFA 2X18A 1XODA 2Z59A 3AU4A 2VKIA 1XKEA 2MFQA 2Z0OA 4A6HA 4HAWB 2LULA 4P7IA 2K49A 4K81A 5HE3A 2Z13A 4EMOA 1WJMA 2D4QA 4EKUA 4NSWA 1DDWA 1ZSQA 2I1JA 3V5WA 2FJUB 3TCAA 4CSQA 2D9ZA 1J19A 2YRYA 3ZVRA 2COCA 2RRFA 4D6WA 2Y7BA 2CY5A 1U27A 1Z87A 2OQBA 2D10A 2RVBB 2NMBA 2PZ1A 5I2MA 5J3QA 3HQCA 4QJ3B 1ZC4B 3TW1A 1DBHA 5D3VA 2ROZB 3ODOA 2QKMA 2P0DA 1V5MA 4CHJA 1ZC3B 2AEHA 2BCJA 4HB3B 4HAUB 1WJ1A 1DDMA 3CXBB 3F0WA 2YT1A 2W2XD 1N3HA 1GG3A 2IFSA 4H8SA 1ZM0A 2Y8FA 3MDBC
chains in the Genus database with same CATH topology
4GOUA 2RRFA 2KR0A 4D6WA 4KHAA 2Z4DA 4QXAB 4KHBA 3FVCA 5I2MA 2R2YA 4Z2MB 4OSNA 3U12A 4QJ5B 3NW8A 3NWAA 2KUQA 3HIEA 4KHOA 4IOYX 2GCLA 4QJ3B 3GYOA 4GNKB 3TW1A 5I2SA 3NWFA 4IFSA 2NBVA 2Z59A 4HSIA 2ZKMX 4PQ0A 2KIEA 1ZYIA 2Z14A 2GUMA 2K49A 2Z13A 2K8EA 2KIGA 3OHMB 4KHBB 4OT1A 4CSQA 4DIXA 3FSSA 3TO1A 2YT2A 3NWDA 4Z2NA 5M4YB 5IRSA 3A58A 2GCJA 3GYPA 2FJUB 4L1RA 5LG4B 3TVVA 4QJ4B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LG4 B;  3A58 A;  5M4Y B;  3HIE A; 
#chains in the Genus database with same CATH topology
 1U5G A;  5EFX A;  2YF0 A;  2Z4D A;  1NU2 A;  3F5R A;  1FHW A;  2R2Y A;  3VOQ A;  4NY0 A;  4IOY X;  5FI0 A;  4GN1 A;  4YON A;  2HTH B;  1U29 A;  1UPR A;  2N0Y A;  1EAZ A;  2GUM A;  2P8V A;  2RLO A;  4XWX A;  2R0D A;  2YT2 A;  3ZDT A;  3OAN A;  1DDV A;  5DIF B;  4L1R A;  4F7G A;  1SHC A;  1B55 A;  3PVW A;  4KVG B;  3QBV B;  4KAX B;  1TXD A;  3DXC A;  1E5W A;  1KI1 B;  5KQ1 A;  2VRW B;  3MPX A;  1KZG A;  3BJI A;  3P7Z A;  4IFS A;  3ULC A;  2KGX B;  2MWN B;  4K17 A;  4DX8 A;  1MKE A;  1WGQ A;  2MKR A;  2LOX A;  4GMV A;  3OHM B;  3KRX A;  2H7D A;  3FSS A;  4WJ7 A;  3KRW A;  4EJN A;  1OMW A;  4HAV B;  4A5K A;  2D9V A;  1M7E A;  3PSC A;  4Z2M B;  1FOE A;  2G35 A;  2E2X A;  2W2X C;  4B6H A;  1PFJ A;  1NI2 A;  3O96 A;  1PLS A;  3A98 B;  5C5B B;  2Z0P A;  2K00 A;  4HB0 B;  5J3T A;  2D9Y A;  2COA A;  5HE0 A;  1MPH A;  2M14 A;  2KR0 A;  4GOU A;  1RJ2 A;  2I5C A;  2J59 M;  1PMS A;  1M7R A;  1FHO A;  3U12 A;  4QJ5 B;  3PP2 A;  1V5P A;  2EMT A;  2KUP A;  1GC7 A;  1U2B A;  2P0H A;  2K8E A;  1Y19 B;  2V76 A;  2M38 A;  4TYZ A;  4Y94 A;  2DTC A;  4HAX B;  5CLL B;  5LG4 B;  4QJ4 B;  1U5E A;  2J0J A;  4F7H A;  1FGZ A;  2COD A;  4QXA B;  5GOW B;  4C0A A;  1AWE A;  3HIE A;  4L6E A;  4GNK B;  3ULB A;  2J0K A;  1EF1 A;  1V5U A;  3DCX A;  3SV1 A;  2DA0 A;  1BAK A;  4PQ0 A;  3ML4 A;  5DHF B;  2GS0 A;  2UVM A;  1W1G A;  1KZ7 A;  2QKL A;  2Q13 A;  2ZPY A;  4A6K A;  3HSA A;  5LOP B;  1V61 A;  1FAO A;  4HDQ A;  1MI1 A;  1MAI A;  4HAY B;  2DX5 A;  4DX9 0;  1WI1 A;  3UZT A;  2IYB A;  2R09 A;  2D2Q A;  4HAT B;  1XD4 A;  1H4R A;  3BIN A;  3D8E A;  2CAY A;  2EC1 A;  3U7D A;  1GC6 A;  3VIA A;  1X11 A;  1IRS A;  4OT1 A;  1DYN A;  2LOZ A;  3B77 A;  4HB2 B;  3D8F A;  1U5F A;  2ROV A;  2AL6 A;  1MIX A;  3TVV A;  5JHH A;  5C16 A;  2K2J A;  5J3Y A;  2YS1 A;  2DKP A;  3X23 A;  3FM8 C;  3LJU X;  4OSN A;  3NW8 A;  3NWA A;  2DX1 A;  1XR0 B;  2NBV A;  4HSI A;  1FB8 A;  5LON B;  2NZ8 B;  3PEG A;  3AU5 A;  1DRO A;  2DLW A;  1X1G A;  1BTN A;  4GZU A;  3G9W A;  4A6F A;  1I2H A;  3TO1 A;  1UNP A;  2YVC A;  1XX0 A;  2COF A;  2GCJ A;  4TKN A;  3PVL A;  3KY9 A;  3M1I B;  1H10 A;  2MDX A;  2DHJ A;  2FJL A;  3RCP A;  2Y8G A;  3FVC A;  3FEH A;  3U8Z A;  3HK0 A;  1WG7 A;  2DHI A;  5KCV A;  1BWN A;  2GCL A;  4GXB A;  5DI9 B;  2CY4 A;  1T77 A;  3NWF A;  3P6A A;  3CIK A;  2RSG A;  4CHM A;  3N7C A;  2ADZ A;  3PG7 A;  1UNQ A;  4PNK A;  4HB4 B;  4KHB B;  5L81 A;  1XCG A;  3KSY A;  3GYP A;  2GJY A;  1J0W A;  5D3Y A;  2P0F A;  5C79 A;  3KZ1 A;  2ELA A;  2DKQ A;  1RRP B;  1K5D B;  4IAP A;  3D8D A;  2KUQ A;  2DYN A;  5HE2 A;  3PVU A;  2DFK A;  5CLQ B;  5FI1 A;  1ZYI A;  2KIG A;  2J0M A;  2RNR B;  4Z2N A;  1OY2 A;  3A8Q A;  4GPT B;  5HE1 A;  5JLJ B;  1I7A A;  1MK9 B;  1WVH A;  2LYD A;  2YS5 A;  1ISN A;  3NSU A;  2EJ8 A;  1P6S A;  5D3W A;  2KIE A;  1P5T A;  1Q67 A;  4GMX B;  1EVH A;  2UZS A;  2RGN B;  1TJ6 A;  3ODW A;  4K2O A;  4DIX A;  4ZRK A;  4CYE A;  3NWD A;  2YSZ A;  2LKO A;  1QC6 A;  2XQN M;  1AQC A;  1V89 A;  2KCJ A;  1V88 A;  1NTY A;  4BBK A;  1WGU A;  2DHK A;  4WVF B;  3SO6 A;  1BTK A;  3PZD A;  3T06 A;  1X1F A;  3SNH A;  1FHX A;  3WA0 A;  5IRS A;  5M4Y B;  1UPQ A;  1FGY A;  5JP4 A;  3DXD A;  4HHV A;  2D11 A;  3DXE A;  5DHA B;  1ZVR A;  2L1C A;  1K5G B;  1Y5O A;  4MY6 A;  3GYO A;  2ELB A;  1LB1 A;  2ZKM X;  3AJ4 A;  5JHG A;  3ODX A;  2JP2 A;  2L2I A;  4A6F B;  2K2U A;  4D0N B;  4MT7 A;  5DH9 B;  1EGX A;  2Z0Q A;  2N23 A;  3WYF B;  2DYQ A;  4K2P A;  3HW2 B;  4KHA A;  2DN6 A;  1NTV A;  3SYX A;  5KQ4 A;  4KHO A;  2LG1 A;  4DBB A;  1LW3 A;  4YL8 A;  2Z14 A;  1UNR A;  1X05 A;  1QQG A;  2I5F A;  5C5B A;  1MK7 B;  4ZRJ A;  3TFM A;  4MK0 A;  2EMS A;  1X86 A;  2D9X A;  5C6R A;  2H7E A;  5D3X A;  2UZR A;  4DXA B;  4HAZ B;  2VSZ A;  1UEF A;  1W1D A;  2D9W A;  2HE7 A;  2YT0 A;  4HDO A;  5D27 A;  2RUK B;  2W2W A;  3A58 A;  3A8P A;  4ZRI A;  1U5D A;  2I1K A;  1P3R A;  1MIZ B;  1W1H A;  3QIJ A;  1SGH A;  4F7U P;  4KHB A;  3IVF A;  4WSF A;  3QWM A;  3SUZ A;  1OQN A;  1TQZ A;  2YS3 A;  2OTX A;  5I2S A;  2CRF A;  2X18 A;  1XOD A;  2Z59 A;  3AU4 A;  2VKI A;  1XKE A;  2MFQ A;  2Z0O A;  4A6H A;  4HAW B;  2LUL A;  4P7I A;  2K49 A;  4K81 A;  5HE3 A;  2Z13 A;  4EMO A;  1WJM A;  2D4Q A;  4EKU A;  4NSW A;  1DDW A;  1ZSQ A;  2I1J A;  3V5W A;  2FJU B;  3TCA A;  4CSQ A;  2D9Z A;  1J19 A;  2YRY A;  3ZVR A;  2COC A;  2RRF A;  4D6W A;  2Y7B A;  2CY5 A;  1U27 A;  1Z87 A;  2OQB A;  2D10 A;  2RVB B;  2NMB A;  2PZ1 A;  5I2M A;  5J3Q A;  3HQC A;  4QJ3 B;  1ZC4 B;  3TW1 A;  1DBH A;  5D3V A;  2ROZ B;  3ODO A;  2QKM A;  2P0D A;  1V5M A;  4CHJ A;  1ZC3 B;  2AEH A;  2BCJ A;  4HB3 B;  4HAU B;  1WJ1 A;  1DDM A;  3CXB B;  3F0W A;  2YT1 A;  2W2X D;  1N3H A;  1GG3 A;  2IFS A;  4H8S A;  1ZM0 A;  2Y8F A;  3MDB C; 
#chains in the Genus database with same CATH homology
 4GOU A;  2RRF A;  2KR0 A;  4D6W A;  4KHA A;  2Z4D A;  4QXA B;  4KHB A;  3FVC A;  5I2M A;  2R2Y A;  4Z2M B;  4OSN A;  3U12 A;  4QJ5 B;  3NW8 A;  3NWA A;  2KUQ A;  3HIE A;  4KHO A;  4IOY X;  2GCL A;  4QJ3 B;  3GYO A;  4GNK B;  3TW1 A;  5I2S A;  3NWF A;  4IFS A;  2NBV A;  2Z59 A;  4HSI A;  2ZKM X;  4PQ0 A;  2KIE A;  1ZYI A;  2Z14 A;  2GUM A;  2K49 A;  2Z13 A;  2K8E A;  2KIG A;  3OHM B;  4KHB B;  4OT1 A;  4CSQ A;  4DIX A;  3FSS A;  3TO1 A;  2YT2 A;  3NWD A;  4Z2N A;  5M4Y B;  5IRS A;  3A58 A;  2GCJ A;  3GYP A;  2FJU B;  4L1R A;  5LG4 B;  3TVV A;  4QJ4 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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