5LL6V

Structure of the 40s abce1 post-splitting complex in ribosome recycling and translation initiation
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
199
structure length
188
Chain Sequence
GISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 18S ribosomal RNA
publication title Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation.
pubmed doi rcsb
total genus 27
structure length 188
sequence length 199
ec nomenclature
pdb deposition date 2016-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF01201 Ribosomal_S8e Ribosomal protein S8e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.168.20 Mainly Alpha Orthogonal Bundle Phosducin; domain 2 Phosducin; domain 2 5ll6V03
3JAMI 5FLXI 5LL6V 5A2QI 3J81I 3J80I 5IT9I
chains in the Genus database with same CATH superfamily
3JAMI 1B9XC 1B9YC 2TRCP 5FLXI 5LL6V 5A2QI 3J81I 3J80I 5IT9I 1A0RP
chains in the Genus database with same CATH topology
3JAMI 5FLXI 5LL6V 5A2QI 3J81I 3J80I 5IT9I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAM I;  5FLX I;  5LL6 V;  5A2Q I;  3J81 I;  3J80 I;  5IT9 I; 
#chains in the Genus database with same CATH topology
 3JAM I;  1B9X C;  1B9Y C;  2TRC P;  5FLX I;  5LL6 V;  5A2Q I;  3J81 I;  3J80 I;  5IT9 I;  1A0R P; 
#chains in the Genus database with same CATH homology
 3JAM I;  5FLX I;  5LL6 V;  5A2Q I;  3J81 I;  3J80 I;  5IT9 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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