5LLIB

Pvhl:elob:eloc in complex with vh298
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
97
structure length
87
Chain Sequence
MMYVKLISSDGHEFIVKREHALTSGTIKAMLSNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
source organism Homo sapiens
publication title Potent and selective chemical probe of hypoxic signalling downstream of HIF-alpha hydroxylation via VHL inhibition.
pubmed doi rcsb
molecule keywords Transcription elongation factor B polypeptide 2
total genus 24
structure length 87
sequence length 97
chains with identical sequence E, H, K
ec nomenclature
pdb deposition date 2016-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 5lliB00
2NN2A 4U2NA 1T1DA 5BXBA 4W9JB 4I6JC 3HTMA 4W9CB 1FQVB 2JZ3C 2I2RA 2VKPA 4CXJA 3HVEA 1NEXA 5FTAA 2P1OA 4AJYC 3C6OA 3ZRCB 4ZOUA 3ZTDB 2OVQA 3HU6A 1FS1B 4BKSB 5EUPA 4UIJA 4AWJB 4BKTB 3DCGB 4W9IB 1P22B 1EOFA 2IHCA 4CXTA 4JTAB 4WQOC 2IF5A 3HQIA 4CXIA 4B95B 2OVRA 1QDVA 3OHUA 1NN7A 2VPKA 4W9EB 2P1NA 3DRZA 4U2MA 5DAFA 4W9KB 1EXBE 3BIMA 3OHVA 4AP2A 1HV2A 3I3NA 5IBKA 4W9HH 4HXIA 2P1PA 3ZTCB 1R2BA 1FS2B 1LDKD 3LNMB 4N9F5 1DSXA 3WSOB 5H7GA 3LBZA 4W9GB 3FKCA 4W9FB 2ASSA 5JH5B 3M5BA 5DADA 3HVEB 3KVTA 1LM8C 4BGCA 3M8VA 3OGKA 4CP3A 4U77A 1QDWA 1CS3A 3ZRFB 3B84A 2E32B 3L2OA 4UYIA 5A6RA 2FNJC 2E31B 5HZGC 1VCBB 1EODA 1EOEA 3C6NA 3OGMA 3V7DA 4APFA 2C9WC 2MA9C 5BO4C 1R29A 1R28A 2P1QA 5BXDA 2A79B 2ASTA 4J8ZA 4JGHC 5A15A 3ZNGB 3LUTB 2Z8HA 3M4TA 3M52A 4B9KB 2R9RB 2Q81A 3OGLA 3GA1A 1A68A 3MKSA 5HYWB 4W9LB 3E4UA 3ZKJB 4JTDB 4CRHA 2IZVC 1LQBB 2YY9A 5BXHA 5LLIB 3C6PA 2PPIA 4EOZA 1BUOA 5H7HA 2OVPA 1S1GA 2NZ0B 4W9HB 3ZUNB 4B9KE 4JTCB 2P1MA 4W9DB
chains in the Genus database with same CATH superfamily
3DRXA 2NN2A 4U2NA 1T1DA 5BXBA 4W9JB 4I6JC 3HTMA 4W9CB 1FQVB 2JZ3C 2I2RA 2VKPA 4CXJA 3HVEA 1NEXA 5FTAA 2P1OA 4AJYC 3C6OA 3ZRCB 4ZOUA 3ZTDB 2OVQA 3HU6A 1FS1B 4BKSB 5EUPA 4UIJA 4AWJB 4BKTB 3DCGB 4W9IB 1P22B 1EOFA 2IHCA 4CXTA 4JTAB 4WQOC 2IF5A 3HQIA 4CXIA 4B95B 2OVRA 1QDVA 3OHUA 4YY8A 1NN7A 2VPKA 4W9EB 2P1NA 3DRZA 4U2MA 5DAFA 4W9KB 1EXBE 3BIMA 3OHVA 4AP2A 1HV2A 3I3NA 5IBKA 4W9HH 4HXIA 2P1PA 3ZTCB 1R2BA 1FS2B 1LDKD 3LNMB 4N9F5 1DSXA 3WSOB 5H7GA 3LBZA 4W9GB 3FKCA 4W9FB 4ZGCA 2ASSA 5JH5B 3M5BA 5DADA 3HVEB 3KVTA 1LM8C 4BGCA 3M8VA 3OGKA 4CP3A 4U77A 1QDWA 1CS3A 3ZRFB 3B84A 2E32B 3L2OA 4UYIA 5A6RA 2FNJC 2E31B 5HZGC 1VCBB 1EODA 1EOEA 3C6NA 3OGMA 3V7DA 4APFA 2C9WC 2MA9C 5BO4C 1R29A 1R28A 2P1QA 5BXDA 2A79B 2ASTA 4J8ZA 4JGHC 5A15A 3ZNGB 3LUTB 2Z8HA 3M4TA 3M52A 3DRYA 4B9KB 2R9RB 2Q81A 3OGLA 3GA1A 1A68A 3MKSA 5HYWB 4W9LB 3E4UA 3ZKJB 4JTDB 4CRHA 2IZVC 1LQBB 2YY9A 5BXHA 5LLIB 3C6PA 2PPIA 4EOZA 1BUOA 5H7HA 2OVPA 1S1GA 2NZ0B 4W9HB 3ZUNB 4B9KE 4JTCB 2P1MA 4W9DB
chains in the Genus database with same CATH topology
3DRXA 2NN2A 4U2NA 1T1DA 5BXBA 4W9JB 4I6JC 3HTMA 4W9CB 1FQVB 2JZ3C 2I2RA 2VKPA 4CXJA 3HVEA 1NEXA 5FTAA 2P1OA 4AJYC 3C6OA 3ZRCB 4ZOUA 3ZTDB 2OVQA 3HU6A 1FS1B 4BKSB 5EUPA 4UIJA 4AWJB 4BKTB 3DCGB 4W9IB 1P22B 1EOFA 2IHCA 4CXTA 4JTAB 4WQOC 2IF5A 3HQIA 4CXIA 4B95B 2OVRA 1QDVA 3OHUA 4YY8A 1NN7A 2VPKA 4W9EB 2P1NA 3DRZA 4U2MA 5DAFA 4W9KB 1EXBE 3BIMA 3OHVA 4AP2A 1HV2A 3I3NA 5IBKA 4W9HH 4HXIA 2P1PA 3ZTCB 1R2BA 1FS2B 1LDKD 3LNMB 4N9F5 1DSXA 3WSOB 5H7GA 3LBZA 4W9GB 3FKCA 4W9FB 4ZGCA 2ASSA 5JH5B 3M5BA 5DADA 3HVEB 3KVTA 1LM8C 4BGCA 3M8VA 3OGKA 4CP3A 4U77A 1QDWA 1CS3A 3ZRFB 3B84A 2E32B 3L2OA 4UYIA 5A6RA 2FNJC 2E31B 5HZGC 1VCBB 1EODA 1EOEA 3C6NA 3OGMA 3V7DA 4APFA 2C9WC 2MA9C 5BO4C 1R29A 1R28A 2P1QA 5BXDA 2A79B 2ASTA 4J8ZA 4JGHC 5A15A 3ZNGB 3LUTB 2Z8HA 3M4TA 3M52A 3DRYA 4B9KB 2R9RB 2Q81A 3OGLA 3GA1A 1A68A 3MKSA 5HYWB 4W9LB 3E4UA 3ZKJB 4JTDB 4CRHA 2IZVC 1LQBB 2YY9A 5BXHA 5LLIB 3C6PA 2PPIA 4EOZA 1BUOA 5H7HA 2OVPA 1S1GA 2NZ0B 4W9HB 3ZUNB 4B9KE 4JTCB 2P1MA 4W9DB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NN2 A;  4U2N A;  1T1D A;  5BXB A;  4W9J B;  4I6J C;  3HTM A;  4W9C B;  1FQV B;  2JZ3 C;  2I2R A;  2VKP A;  4CXJ A;  3HVE A;  1NEX A;  5FTA A;  2P1O A;  4AJY C;  3C6O A;  3ZRC B;  4ZOU A;  3ZTD B;  2OVQ A;  3HU6 A;  1FS1 B;  4BKS B;  5EUP A;  4UIJ A;  4AWJ B;  4BKT B;  3DCG B;  4W9I B;  1P22 B;  1EOF A;  2IHC A;  4CXT A;  4JTA B;  4WQO C;  2IF5 A;  3HQI A;  4CXI A;  4B95 B;  2OVR A;  1QDV A;  3OHU A;  1NN7 A;  2VPK A;  4W9E B;  2P1N A;  3DRZ A;  4U2M A;  5DAF A;  4W9K B;  1EXB E;  3BIM A;  3OHV A;  4AP2 A;  1HV2 A;  3I3N A;  5IBK A;  4W9H H;  4HXI A;  2P1P A;  3ZTC B;  1R2B A;  1FS2 B;  1LDK D;  3LNM B;  4N9F 5;  1DSX A;  3WSO B;  5H7G A;  3LBZ A;  4W9G B;  3FKC A;  4W9F B;  2ASS A;  5JH5 B;  3M5B A;  5DAD A;  3HVE B;  3KVT A;  1LM8 C;  4BGC A;  3M8V A;  3OGK A;  4CP3 A;  4U77 A;  1QDW A;  1CS3 A;  3ZRF B;  3B84 A;  2E32 B;  3L2O A;  4UYI A;  5A6R A;  2FNJ C;  2E31 B;  5HZG C;  1VCB B;  1EOD A;  1EOE A;  3C6N A;  3OGM A;  3V7D A;  4APF A;  2C9W C;  2MA9 C;  5BO4 C;  1R29 A;  1R28 A;  2P1Q A;  5BXD A;  2A79 B;  2AST A;  4J8Z A;  4JGH C;  5A15 A;  3ZNG B;  3LUT B;  2Z8H A;  3M4T A;  3M52 A;  4B9K B;  2R9R B;  2Q81 A;  3OGL A;  3GA1 A;  1A68 A;  3MKS A;  5HYW B;  4W9L B;  3E4U A;  3ZKJ B;  4JTD B;  4CRH A;  2IZV C;  1LQB B;  2YY9 A;  5BXH A;  5LLI B;  3C6P A;  2PPI A;  4EOZ A;  1BUO A;  5H7H A;  2OVP A;  1S1G A;  2NZ0 B;  4W9H B;  3ZUN B;  4B9K E;  4JTC B;  2P1M A;  4W9D B; 
#chains in the Genus database with same CATH topology
 3DRX A;  2NN2 A;  4U2N A;  1T1D A;  5BXB A;  4W9J B;  4I6J C;  3HTM A;  4W9C B;  1FQV B;  2JZ3 C;  2I2R A;  2VKP A;  4CXJ A;  3HVE A;  1NEX A;  5FTA A;  2P1O A;  4AJY C;  3C6O A;  3ZRC B;  4ZOU A;  3ZTD B;  2OVQ A;  3HU6 A;  1FS1 B;  4BKS B;  5EUP A;  4UIJ A;  4AWJ B;  4BKT B;  3DCG B;  4W9I B;  1P22 B;  1EOF A;  2IHC A;  4CXT A;  4JTA B;  4WQO C;  2IF5 A;  3HQI A;  4CXI A;  4B95 B;  2OVR A;  1QDV A;  3OHU A;  4YY8 A;  1NN7 A;  2VPK A;  4W9E B;  2P1N A;  3DRZ A;  4U2M A;  5DAF A;  4W9K B;  1EXB E;  3BIM A;  3OHV A;  4AP2 A;  1HV2 A;  3I3N A;  5IBK A;  4W9H H;  4HXI A;  2P1P A;  3ZTC B;  1R2B A;  1FS2 B;  1LDK D;  3LNM B;  4N9F 5;  1DSX A;  3WSO B;  5H7G A;  3LBZ A;  4W9G B;  3FKC A;  4W9F B;  4ZGC A;  2ASS A;  5JH5 B;  3M5B A;  5DAD A;  3HVE B;  3KVT A;  1LM8 C;  4BGC A;  3M8V A;  3OGK A;  4CP3 A;  4U77 A;  1QDW A;  1CS3 A;  3ZRF B;  3B84 A;  2E32 B;  3L2O A;  4UYI A;  5A6R A;  2FNJ C;  2E31 B;  5HZG C;  1VCB B;  1EOD A;  1EOE A;  3C6N A;  3OGM A;  3V7D A;  4APF A;  2C9W C;  2MA9 C;  5BO4 C;  1R29 A;  1R28 A;  2P1Q A;  5BXD A;  2A79 B;  2AST A;  4J8Z A;  4JGH C;  5A15 A;  3ZNG B;  3LUT B;  2Z8H A;  3M4T A;  3M52 A;  3DRY A;  4B9K B;  2R9R B;  2Q81 A;  3OGL A;  3GA1 A;  1A68 A;  3MKS A;  5HYW B;  4W9L B;  3E4U A;  3ZKJ B;  4JTD B;  4CRH A;  2IZV C;  1LQB B;  2YY9 A;  5BXH A;  5LLI B;  3C6P A;  2PPI A;  4EOZ A;  1BUO A;  5H7H A;  2OVP A;  1S1G A;  2NZ0 B;  4W9H B;  3ZUN B;  4B9K E;  4JTC B;  2P1M A;  4W9D B; 
#chains in the Genus database with same CATH homology
 3DRX A;  2NN2 A;  4U2N A;  1T1D A;  5BXB A;  4W9J B;  4I6J C;  3HTM A;  4W9C B;  1FQV B;  2JZ3 C;  2I2R A;  2VKP A;  4CXJ A;  3HVE A;  1NEX A;  5FTA A;  2P1O A;  4AJY C;  3C6O A;  3ZRC B;  4ZOU A;  3ZTD B;  2OVQ A;  3HU6 A;  1FS1 B;  4BKS B;  5EUP A;  4UIJ A;  4AWJ B;  4BKT B;  3DCG B;  4W9I B;  1P22 B;  1EOF A;  2IHC A;  4CXT A;  4JTA B;  4WQO C;  2IF5 A;  3HQI A;  4CXI A;  4B95 B;  2OVR A;  1QDV A;  3OHU A;  4YY8 A;  1NN7 A;  2VPK A;  4W9E B;  2P1N A;  3DRZ A;  4U2M A;  5DAF A;  4W9K B;  1EXB E;  3BIM A;  3OHV A;  4AP2 A;  1HV2 A;  3I3N A;  5IBK A;  4W9H H;  4HXI A;  2P1P A;  3ZTC B;  1R2B A;  1FS2 B;  1LDK D;  3LNM B;  4N9F 5;  1DSX A;  3WSO B;  5H7G A;  3LBZ A;  4W9G B;  3FKC A;  4W9F B;  4ZGC A;  2ASS A;  5JH5 B;  3M5B A;  5DAD A;  3HVE B;  3KVT A;  1LM8 C;  4BGC A;  3M8V A;  3OGK A;  4CP3 A;  4U77 A;  1QDW A;  1CS3 A;  3ZRF B;  3B84 A;  2E32 B;  3L2O A;  4UYI A;  5A6R A;  2FNJ C;  2E31 B;  5HZG C;  1VCB B;  1EOD A;  1EOE A;  3C6N A;  3OGM A;  3V7D A;  4APF A;  2C9W C;  2MA9 C;  5BO4 C;  1R29 A;  1R28 A;  2P1Q A;  5BXD A;  2A79 B;  2AST A;  4J8Z A;  4JGH C;  5A15 A;  3ZNG B;  3LUT B;  2Z8H A;  3M4T A;  3M52 A;  3DRY A;  4B9K B;  2R9R B;  2Q81 A;  3OGL A;  3GA1 A;  1A68 A;  3MKS A;  5HYW B;  4W9L B;  3E4U A;  3ZKJ B;  4JTD B;  4CRH A;  2IZV C;  1LQB B;  2YY9 A;  5BXH A;  5LLI B;  3C6P A;  2PPI A;  4EOZ A;  1BUO A;  5H7H A;  2OVP A;  1S1G A;  2NZ0 B;  4W9H B;  3ZUN B;  4B9K E;  4JTC B;  2P1M A;  4W9D B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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