5LXBA

Crystal structure of a mutant binding protein (5htbp-achbp) in complex with palonosetron
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYWERQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Palonosetron-5-HT3 Receptor Interactions As Shown by a Binding Protein Cocrystal Structure.
pubmed doi rcsb
molecule keywords Soluble acetylcholine receptor
source organism Aplysia californica
molecule tags Acetylcholine binding protein
total genus 49
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2016-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5lxbA00
3WTOA 3TLSA 4XHEA 4QABA 2XYSA 4X5TA 4UM3P 5HCMA 5HCJA 3RIFA 3RQUA 3TLVA 2WNJA 4UM3A 3SQ9A 4QAAA 5AINA 2QC1B 4HFIA 5J5GA 4AFTA 4A97A 3WTJA 4AFGA 4ZJTA 4HFCA 4LMJA 2Y57A 3U8JA 5BRXA 3RQWA 2BG9A 2BG9C 3C79A 5J5HA 5KE4A 5AFHA 2XZ6A 3GUAA 5AFJA 3EAMA 2BG9E 2C9TA 4A98A 2YOEA 4PIRA 4NPPA 4TWFA 4IL9A 5J5IA 3SQ6A 5LXBA 4COFA 2XQ4A 2Y7YA 4HFBA 4TNVA 4ILAA 4DBMA 3RI5A 5BP0A 4BFQA 2BR8A 2ZJVA 2ZJUA 4B5DA 4XK9A 5HEOA 2XNVA 2X00D 3TLWA 2WNLA 2XNUA 4IL4A 2XYTA 4UM3S 3U8KA 1UW6A 2Y58A 4ZK1A 5TVCA 3RHWA 3ZKRA 5AFNA 5L4HA 4UM1A 2BR7A 3UU5A 2PH9A 3JAFA 4ILBA 2UZ6A 2XQ8A 4UXUA 5SYOA 3WTLA 5IUXA 4LMKA 2XQ5A 4ZK4A 3ZDHA 2WNCA 1UX2A 2XQAA 5L47A 3JAEA 1UV6A 5L4EA 3T4MA 4AFHA 3U8NA 3PEOA 2BJ0A 3UU4A 4ZZBA 3EHZA 4D01A 3WIPA 5HEUA 2XQ7A 4UY2A 4ZJSA 2XQ3A 4QH5A 3UU8A 2PGZA 2YMDA 5AFLA 4ALXA 2BYNA 5CFBA 3UUBA 4TNWA 5BW2A 2BYPA 2W8GA 3SH1A 3WTNA 3UU3A 2X00A 4HQPA 2YN6A 4EZ1A 3P4WA 2VL0A 5HEJA 4WV9A 4FRRA 2BYSA 4LMLA 4TWDA 4NZBA 2BYQA 4Z91A 5KZUA 3UU6A 5HEGA 4QH4A 4ZRUA 3TLUA 4IREA 2YKSA 5AFKA 3C84A 2XNTA 4TWHA 1I9BA 4QACA 4BQTA 3LSVA 3IGQA 2YMEA 2WZYA 4HFHA 5JMEA 4F8HA 4HFDA 3P50A 5AFMB 5AFMA 4HFEA 3WTKA 3RIAA 3WTMA 2XQ6A 2BG9B 4ZZCA 5J5FA 4QH1A 3EI0A 5HEHA 3WTHA 3WTIA 2WN9A 3JADA 4Z90A 5FJVA 5CO5A 5LG3A 2XZ5A 3ZDGA 3U8MA 2Y54A 3SIOA 5J0ZA 3PMZA 4ILCA 3UQ7A 3U8LA 3UQ4A 2XQ9A 2BYRA 4ZR6A 3TLTA 2Y56A 2W8FA
chains in the Genus database with same CATH superfamily
3WTOA 3TLSA 4XHEA 4QABA 2XYSA 4X5TA 4UM3P 5HCMA 5HCJA 3RIFA 3RQUA 3TLVA 2WNJA 4UM3A 3SQ9A 4QAAA 5AINA 2QC1B 4HFIA 5J5GA 4AFTA 4A97A 3WTJA 4AFGA 4ZJTA 4HFCA 4LMJA 2Y57A 3U8JA 5BRXA 3RQWA 2BG9A 2BG9C 3C79A 5J5HA 5KE4A 5AFHA 2XZ6A 3GUAA 5AFJA 3EAMA 2BG9E 2C9TA 4A98A 2YOEA 4PIRA 4NPPA 4TWFA 4IL9A 5J5IA 3SQ6A 5LXBA 4COFA 2XQ4A 2Y7YA 4HFBA 4TNVA 4ILAA 4DBMA 3RI5A 5BP0A 4BFQA 2BR8A 2ZJVA 2ZJUA 4B5DA 4XK9A 5HEOA 2XNVA 2X00D 3TLWA 2WNLA 2XNUA 4IL4A 2XYTA 4UM3S 3U8KA 1UW6A 2Y58A 4ZK1A 5TVCA 3RHWA 3ZKRA 5AFNA 5L4HA 4UM1A 2BR7A 3UU5A 2PH9A 3JAFA 4ILBA 2UZ6A 2XQ8A 4UXUA 5SYOA 3WTLA 5IUXA 4LMKA 2XQ5A 4ZK4A 3ZDHA 2WNCA 1UX2A 2XQAA 5L47A 3JAEA 1UV6A 5L4EA 3T4MA 4AFHA 3U8NA 3PEOA 2BJ0A 3UU4A 4ZZBA 3EHZA 4D01A 3WIPA 5HEUA 2XQ7A 4UY2A 4ZJSA 2XQ3A 4QH5A 3UU8A 2PGZA 2YMDA 5AFLA 4ALXA 2BYNA 5CFBA 3UUBA 4TNWA 5BW2A 2BYPA 2W8GA 3SH1A 3WTNA 3UU3A 2X00A 4HQPA 2YN6A 4EZ1A 3P4WA 2VL0A 5HEJA 4WV9A 4FRRA 2BYSA 4LMLA 4TWDA 4NZBA 2BYQA 4Z91A 5KZUA 3UU6A 5HEGA 4QH4A 4ZRUA 3TLUA 4IREA 2YKSA 5AFKA 3C84A 2XNTA 4TWHA 1I9BA 4QACA 4BQTA 3LSVA 3IGQA 2YMEA 2WZYA 4HFHA 5JMEA 4F8HA 4HFDA 3P50A 5AFMB 5AFMA 4HFEA 3WTKA 3RIAA 3WTMA 2XQ6A 2BG9B 4ZZCA 5J5FA 4QH1A 3EI0A 5HEHA 3WTHA 3WTIA 2WN9A 3JADA 4Z90A 5FJVA 5CO5A 5LG3A 2XZ5A 3ZDGA 3U8MA 2Y54A 3SIOA 5J0ZA 3PMZA 4ILCA 3UQ7A 3U8LA 3UQ4A 2XQ9A 2BYRA 4ZR6A 3TLTA 2Y56A 2W8FA
chains in the Genus database with same CATH topology
3WTOA 3TLSA 4XHEA 4QABA 2XYSA 4X5TA 4UM3P 5HCMA 5HCJA 3RIFA 3RQUA 3TLVA 2WNJA 4UM3A 3SQ9A 4QAAA 5AINA 2QC1B 4HFIA 5J5GA 4AFTA 4A97A 3WTJA 4AFGA 4ZJTA 4HFCA 4LMJA 2Y57A 3U8JA 5BRXA 3RQWA 2BG9A 2BG9C 3C79A 5J5HA 5KE4A 5AFHA 2XZ6A 3GUAA 5AFJA 3EAMA 2BG9E 2C9TA 4A98A 2YOEA 4PIRA 4NPPA 4TWFA 4IL9A 5J5IA 3SQ6A 5LXBA 4COFA 2XQ4A 2Y7YA 4HFBA 4TNVA 4ILAA 4DBMA 3RI5A 5BP0A 4BFQA 2BR8A 2ZJVA 2ZJUA 4B5DA 4XK9A 5HEOA 2XNVA 2X00D 3TLWA 2WNLA 2XNUA 4IL4A 2XYTA 4UM3S 3U8KA 1UW6A 2Y58A 4ZK1A 5TVCA 3RHWA 3ZKRA 5AFNA 5L4HA 4UM1A 2BR7A 3UU5A 2PH9A 3JAFA 4ILBA 2UZ6A 2XQ8A 4UXUA 5SYOA 3WTLA 5IUXA 4LMKA 2XQ5A 4ZK4A 3ZDHA 2WNCA 1UX2A 2XQAA 5L47A 3JAEA 1UV6A 5L4EA 3T4MA 4AFHA 3U8NA 3PEOA 2BJ0A 3UU4A 4ZZBA 3EHZA 4D01A 3WIPA 5HEUA 2XQ7A 4UY2A 4ZJSA 2XQ3A 4QH5A 3UU8A 2PGZA 2YMDA 5AFLA 4ALXA 2BYNA 5CFBA 3UUBA 4TNWA 5BW2A 2BYPA 2W8GA 3SH1A 3WTNA 3UU3A 2X00A 4HQPA 2YN6A 4EZ1A 3P4WA 2VL0A 5HEJA 4WV9A 4FRRA 2BYSA 4LMLA 4TWDA 4NZBA 2BYQA 4Z91A 5KZUA 3UU6A 5HEGA 4QH4A 4ZRUA 3TLUA 4IREA 2YKSA 5AFKA 3C84A 2XNTA 4TWHA 1I9BA 4QACA 4BQTA 3LSVA 3IGQA 2YMEA 2WZYA 4HFHA 5JMEA 4F8HA 4HFDA 3P50A 5AFMB 5AFMA 4HFEA 3WTKA 3RIAA 3WTMA 2XQ6A 2BG9B 4ZZCA 5J5FA 4QH1A 3EI0A 5HEHA 3WTHA 3WTIA 2WN9A 3JADA 4Z90A 5FJVA 5CO5A 5LG3A 2XZ5A 3ZDGA 3U8MA 2Y54A 3SIOA 5J0ZA 3PMZA 4ILCA 3UQ7A 3U8LA 3UQ4A 2XQ9A 2BYRA 4ZR6A 3TLTA 2Y56A 2W8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WTO A;  3TLS A;  4XHE A;  4QAB A;  2XYS A;  4X5T A;  4UM3 P;  5HCM A;  5HCJ A;  3RIF A;  3RQU A;  3TLV A;  2WNJ A;  4UM3 A;  3SQ9 A;  4QAA A;  5AIN A;  2QC1 B;  4HFI A;  5J5G A;  4AFT A;  4A97 A;  3WTJ A;  4AFG A;  4ZJT A;  4HFC A;  4LMJ A;  2Y57 A;  3U8J A;  5BRX A;  3RQW A;  2BG9 A;  2BG9 C;  3C79 A;  5J5H A;  5KE4 A;  5AFH A;  2XZ6 A;  3GUA A;  5AFJ A;  3EAM A;  2BG9 E;  2C9T A;  4A98 A;  2YOE A;  4PIR A;  4NPP A;  4TWF A;  4IL9 A;  5J5I A;  3SQ6 A;  5LXB A;  4COF A;  2XQ4 A;  2Y7Y A;  4HFB A;  4TNV A;  4ILA A;  4DBM A;  3RI5 A;  5BP0 A;  4BFQ A;  2BR8 A;  2ZJV A;  2ZJU A;  4B5D A;  4XK9 A;  5HEO A;  2XNV A;  2X00 D;  3TLW A;  2WNL A;  2XNU A;  4IL4 A;  2XYT A;  4UM3 S;  3U8K A;  1UW6 A;  2Y58 A;  4ZK1 A;  5TVC A;  3RHW A;  3ZKR A;  5AFN A;  5L4H A;  4UM1 A;  2BR7 A;  3UU5 A;  2PH9 A;  3JAF A;  4ILB A;  2UZ6 A;  2XQ8 A;  4UXU A;  5SYO A;  3WTL A;  5IUX A;  4LMK A;  2XQ5 A;  4ZK4 A;  3ZDH A;  2WNC A;  1UX2 A;  2XQA A;  5L47 A;  3JAE A;  1UV6 A;  5L4E A;  3T4M A;  4AFH A;  3U8N A;  3PEO A;  2BJ0 A;  3UU4 A;  4ZZB A;  3EHZ A;  4D01 A;  3WIP A;  5HEU A;  2XQ7 A;  4UY2 A;  4ZJS A;  2XQ3 A;  4QH5 A;  3UU8 A;  2PGZ A;  2YMD A;  5AFL A;  4ALX A;  2BYN A;  5CFB A;  3UUB A;  4TNW A;  5BW2 A;  2BYP A;  2W8G A;  3SH1 A;  3WTN A;  3UU3 A;  2X00 A;  4HQP A;  2YN6 A;  4EZ1 A;  3P4W A;  2VL0 A;  5HEJ A;  4WV9 A;  4FRR A;  2BYS A;  4LML A;  4TWD A;  4NZB A;  2BYQ A;  4Z91 A;  5KZU A;  3UU6 A;  5HEG A;  4QH4 A;  4ZRU A;  3TLU A;  4IRE A;  2YKS A;  5AFK A;  3C84 A;  2XNT A;  4TWH A;  1I9B A;  4QAC A;  4BQT A;  3LSV A;  3IGQ A;  2YME A;  2WZY A;  4HFH A;  5JME A;  4F8H A;  4HFD A;  3P50 A;  5AFM B;  5AFM A;  4HFE A;  3WTK A;  3RIA A;  3WTM A;  2XQ6 A;  2BG9 B;  4ZZC A;  5J5F A;  4QH1 A;  3EI0 A;  5HEH A;  3WTH A;  3WTI A;  2WN9 A;  3JAD A;  4Z90 A;  5FJV A;  5CO5 A;  5LG3 A;  2XZ5 A;  3ZDG A;  3U8M A;  2Y54 A;  3SIO A;  5J0Z A;  3PMZ A;  4ILC A;  3UQ7 A;  3U8L A;  3UQ4 A;  2XQ9 A;  2BYR A;  4ZR6 A;  3TLT A;  2Y56 A;  2W8F A; 
#chains in the Genus database with same CATH topology
 3WTO A;  3TLS A;  4XHE A;  4QAB A;  2XYS A;  4X5T A;  4UM3 P;  5HCM A;  5HCJ A;  3RIF A;  3RQU A;  3TLV A;  2WNJ A;  4UM3 A;  3SQ9 A;  4QAA A;  5AIN A;  2QC1 B;  4HFI A;  5J5G A;  4AFT A;  4A97 A;  3WTJ A;  4AFG A;  4ZJT A;  4HFC A;  4LMJ A;  2Y57 A;  3U8J A;  5BRX A;  3RQW A;  2BG9 A;  2BG9 C;  3C79 A;  5J5H A;  5KE4 A;  5AFH A;  2XZ6 A;  3GUA A;  5AFJ A;  3EAM A;  2BG9 E;  2C9T A;  4A98 A;  2YOE A;  4PIR A;  4NPP A;  4TWF A;  4IL9 A;  5J5I A;  3SQ6 A;  5LXB A;  4COF A;  2XQ4 A;  2Y7Y A;  4HFB A;  4TNV A;  4ILA A;  4DBM A;  3RI5 A;  5BP0 A;  4BFQ A;  2BR8 A;  2ZJV A;  2ZJU A;  4B5D A;  4XK9 A;  5HEO A;  2XNV A;  2X00 D;  3TLW A;  2WNL A;  2XNU A;  4IL4 A;  2XYT A;  4UM3 S;  3U8K A;  1UW6 A;  2Y58 A;  4ZK1 A;  5TVC A;  3RHW A;  3ZKR A;  5AFN A;  5L4H A;  4UM1 A;  2BR7 A;  3UU5 A;  2PH9 A;  3JAF A;  4ILB A;  2UZ6 A;  2XQ8 A;  4UXU A;  5SYO A;  3WTL A;  5IUX A;  4LMK A;  2XQ5 A;  4ZK4 A;  3ZDH A;  2WNC A;  1UX2 A;  2XQA A;  5L47 A;  3JAE A;  1UV6 A;  5L4E A;  3T4M A;  4AFH A;  3U8N A;  3PEO A;  2BJ0 A;  3UU4 A;  4ZZB A;  3EHZ A;  4D01 A;  3WIP A;  5HEU A;  2XQ7 A;  4UY2 A;  4ZJS A;  2XQ3 A;  4QH5 A;  3UU8 A;  2PGZ A;  2YMD A;  5AFL A;  4ALX A;  2BYN A;  5CFB A;  3UUB A;  4TNW A;  5BW2 A;  2BYP A;  2W8G A;  3SH1 A;  3WTN A;  3UU3 A;  2X00 A;  4HQP A;  2YN6 A;  4EZ1 A;  3P4W A;  2VL0 A;  5HEJ A;  4WV9 A;  4FRR A;  2BYS A;  4LML A;  4TWD A;  4NZB A;  2BYQ A;  4Z91 A;  5KZU A;  3UU6 A;  5HEG A;  4QH4 A;  4ZRU A;  3TLU A;  4IRE A;  2YKS A;  5AFK A;  3C84 A;  2XNT A;  4TWH A;  1I9B A;  4QAC A;  4BQT A;  3LSV A;  3IGQ A;  2YME A;  2WZY A;  4HFH A;  5JME A;  4F8H A;  4HFD A;  3P50 A;  5AFM B;  5AFM A;  4HFE A;  3WTK A;  3RIA A;  3WTM A;  2XQ6 A;  2BG9 B;  4ZZC A;  5J5F A;  4QH1 A;  3EI0 A;  5HEH A;  3WTH A;  3WTI A;  2WN9 A;  3JAD A;  4Z90 A;  5FJV A;  5CO5 A;  5LG3 A;  2XZ5 A;  3ZDG A;  3U8M A;  2Y54 A;  3SIO A;  5J0Z A;  3PMZ A;  4ILC A;  3UQ7 A;  3U8L A;  3UQ4 A;  2XQ9 A;  2BYR A;  4ZR6 A;  3TLT A;  2Y56 A;  2W8F A; 
#chains in the Genus database with same CATH homology
 3WTO A;  3TLS A;  4XHE A;  4QAB A;  2XYS A;  4X5T A;  4UM3 P;  5HCM A;  5HCJ A;  3RIF A;  3RQU A;  3TLV A;  2WNJ A;  4UM3 A;  3SQ9 A;  4QAA A;  5AIN A;  2QC1 B;  4HFI A;  5J5G A;  4AFT A;  4A97 A;  3WTJ A;  4AFG A;  4ZJT A;  4HFC A;  4LMJ A;  2Y57 A;  3U8J A;  5BRX A;  3RQW A;  2BG9 A;  2BG9 C;  3C79 A;  5J5H A;  5KE4 A;  5AFH A;  2XZ6 A;  3GUA A;  5AFJ A;  3EAM A;  2BG9 E;  2C9T A;  4A98 A;  2YOE A;  4PIR A;  4NPP A;  4TWF A;  4IL9 A;  5J5I A;  3SQ6 A;  5LXB A;  4COF A;  2XQ4 A;  2Y7Y A;  4HFB A;  4TNV A;  4ILA A;  4DBM A;  3RI5 A;  5BP0 A;  4BFQ A;  2BR8 A;  2ZJV A;  2ZJU A;  4B5D A;  4XK9 A;  5HEO A;  2XNV A;  2X00 D;  3TLW A;  2WNL A;  2XNU A;  4IL4 A;  2XYT A;  4UM3 S;  3U8K A;  1UW6 A;  2Y58 A;  4ZK1 A;  5TVC A;  3RHW A;  3ZKR A;  5AFN A;  5L4H A;  4UM1 A;  2BR7 A;  3UU5 A;  2PH9 A;  3JAF A;  4ILB A;  2UZ6 A;  2XQ8 A;  4UXU A;  5SYO A;  3WTL A;  5IUX A;  4LMK A;  2XQ5 A;  4ZK4 A;  3ZDH A;  2WNC A;  1UX2 A;  2XQA A;  5L47 A;  3JAE A;  1UV6 A;  5L4E A;  3T4M A;  4AFH A;  3U8N A;  3PEO A;  2BJ0 A;  3UU4 A;  4ZZB A;  3EHZ A;  4D01 A;  3WIP A;  5HEU A;  2XQ7 A;  4UY2 A;  4ZJS A;  2XQ3 A;  4QH5 A;  3UU8 A;  2PGZ A;  2YMD A;  5AFL A;  4ALX A;  2BYN A;  5CFB A;  3UUB A;  4TNW A;  5BW2 A;  2BYP A;  2W8G A;  3SH1 A;  3WTN A;  3UU3 A;  2X00 A;  4HQP A;  2YN6 A;  4EZ1 A;  3P4W A;  2VL0 A;  5HEJ A;  4WV9 A;  4FRR A;  2BYS A;  4LML A;  4TWD A;  4NZB A;  2BYQ A;  4Z91 A;  5KZU A;  3UU6 A;  5HEG A;  4QH4 A;  4ZRU A;  3TLU A;  4IRE A;  2YKS A;  5AFK A;  3C84 A;  2XNT A;  4TWH A;  1I9B A;  4QAC A;  4BQT A;  3LSV A;  3IGQ A;  2YME A;  2WZY A;  4HFH A;  5JME A;  4F8H A;  4HFD A;  3P50 A;  5AFM B;  5AFM A;  4HFE A;  3WTK A;  3RIA A;  3WTM A;  2XQ6 A;  2BG9 B;  4ZZC A;  5J5F A;  4QH1 A;  3EI0 A;  5HEH A;  3WTH A;  3WTI A;  2WN9 A;  3JAD A;  4Z90 A;  5FJV A;  5CO5 A;  5LG3 A;  2XZ5 A;  3ZDG A;  3U8M A;  2Y54 A;  3SIO A;  5J0Z A;  3PMZ A;  4ILC A;  3UQ7 A;  3U8L A;  3UQ4 A;  2XQ9 A;  2BYR A;  4ZR6 A;  3TLT A;  2Y56 A;  2W8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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