5LXBA

Crystal structure of a mutant binding protein (5htbp-achbp) in complex with palonosetron
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYWERQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine binding protein
source organism Aplysia californica
publication title Palonosetron-5-HT3 Receptor Interactions As Shown by a Binding Protein Cocrystal Structure.
pubmed doi rcsb
molecule keywords Soluble acetylcholine receptor
total genus 49
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2016-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5lxbA00
5IUXA 5HEJA 5AFNA 2XYSA 4ZJTA 4QAAA 2BG9B 4UXUA 3EAMA 3UU5A 4QH4A 3T4MA 4QABA 5HEOA 2XNUA 4XK9A 3PEOA 5KE4A 3ZKRA 5J0ZA 3C79A 3WTLA 3SH1A 5AFMB 4IL4A 3TLVA 2XQ4A 3RI5A 5L47A 2C9TA 4HFBA 2X00D 3ZDHA 4ZR6A 3RIFA 4BQTA 4Z90A 3SIOA 4D01A 4ZK1A 3RIAA 4HFEA 4QH1A 5AFHA 4A98A 4QACA 2XZ5A 2BYRA 3WTJA 5J5HA 3UUBA 4TWDA 4ILBA 3C84A 1I9BA 5AFKA 4IREA 4AFHA 4HQPA 2BJ0A 2BYPA 3U8JA 1UV6A 5CO5A 3UU4A 5BW2A 2XNVA 2XQ7A 5KZUA 2BYNA 5BP0A 3JADA 2WNLA 2Y57A 3P50A 4NPPA 2BG9C 5HCJA 3WTHA 5AINA 2XQ8A 2ZJUA 2WN9A 4LMLA 2VL0A 3RQWA 4TWFA 3WTNA 4B5DA 4COFA 2Y56A 3EHZA 2Y58A 2BYQA 4BFQA 4ILCA 3IGQA 4ZZCA 5JMEA 4TWHA 4DBMA 4ZRUA 4UM3S 4X5TA 4FRRA 3U8NA 4HFHA 4ZZBA 5HEHA 4TNWA 4AFTA 2XQAA 3TLTA 3SQ9A 2W8FA 5BRXA 4ZJSA 4LMJA 3JAEA 5LXBA 4EZ1A 1UX2A 2ZJVA 4UM1A 4ZK4A 2UZ6A 3EI0A 3RHWA 3U8KA 2Y54A 5J5FA 2XQ3A 3GUAA 3TLUA 2XNTA 3U8MA 4UY2A 2Y7YA 4NZBA 3U8LA 2YMEA 4ILAA 4HFDA 5HEUA 3ZDGA 5L4EA 2WZYA 3WTMA 3RQUA 3LSVA 4UM3P 3UQ7A 4QH5A 3SQ6A 3UU8A 2PGZA 2BYSA 4AFGA 3WTOA 2W8GA 2XQ5A 3WIPA 4XHEA 5LG3A 2X00A 2YOEA 2XYTA 3TLSA 4PIRA 5J5IA 4HFCA 3PMZA 2BG9A 2XQ9A 5L4HA 4F8HA 4UM3A 3UQ4A 4TNVA 2PH9A 4Z91A 5HCMA 4LMKA 2XQ6A 3P4WA 4HFIA 5TVCA 1UW6A 2WNCA 5AFMA 2XZ6A 2QC1B 2YMDA 3JAFA 3UU3A 2YKSA 3WTIA 5J5GA 5FJVA 2WNJA 4IL9A 5AFLA 4WV9A 3TLWA 5SYOA 3UU6A 3WTKA 4A97A 5CFBA 5HEGA 5AFJA 2BR8A 2BG9E 2BR7A 2YN6A 4ALXA
chains in the Genus database with same CATH superfamily
5IUXA 5HEJA 5AFNA 2XYSA 4ZJTA 4QAAA 2BG9B 4UXUA 3EAMA 3UU5A 4QH4A 3T4MA 4QABA 5HEOA 2XNUA 4XK9A 3PEOA 5KE4A 3ZKRA 5J0ZA 3C79A 3WTLA 3SH1A 5AFMB 4IL4A 3TLVA 2XQ4A 3RI5A 5L47A 2C9TA 4HFBA 2X00D 3ZDHA 4ZR6A 3RIFA 4BQTA 4Z90A 3SIOA 4D01A 4ZK1A 3RIAA 4HFEA 4QH1A 5AFHA 4A98A 4QACA 2XZ5A 2BYRA 3WTJA 5J5HA 3UUBA 4TWDA 4ILBA 3C84A 1I9BA 5AFKA 4IREA 4AFHA 4HQPA 2BJ0A 2BYPA 3U8JA 1UV6A 5CO5A 3UU4A 5BW2A 2XNVA 2XQ7A 5KZUA 2BYNA 5BP0A 3JADA 2WNLA 2Y57A 3P50A 4NPPA 2BG9C 5HCJA 3WTHA 5AINA 2XQ8A 2ZJUA 2WN9A 4LMLA 2VL0A 3RQWA 4TWFA 3WTNA 4B5DA 4COFA 2Y56A 3EHZA 2Y58A 2BYQA 4BFQA 4ILCA 3IGQA 4ZZCA 5JMEA 4TWHA 4DBMA 4ZRUA 4UM3S 4X5TA 4FRRA 3U8NA 4HFHA 4ZZBA 5HEHA 4TNWA 4AFTA 2XQAA 3TLTA 3SQ9A 2W8FA 5BRXA 4ZJSA 4LMJA 3JAEA 5LXBA 4EZ1A 1UX2A 2ZJVA 4UM1A 4ZK4A 2UZ6A 3EI0A 3RHWA 3U8KA 2Y54A 5J5FA 2XQ3A 3GUAA 3TLUA 2XNTA 3U8MA 4UY2A 2Y7YA 4NZBA 3U8LA 2YMEA 4ILAA 4HFDA 5HEUA 3ZDGA 5L4EA 2WZYA 3WTMA 3RQUA 3LSVA 4UM3P 3UQ7A 4QH5A 3SQ6A 3UU8A 2PGZA 2BYSA 4AFGA 3WTOA 2W8GA 2XQ5A 3WIPA 4XHEA 5LG3A 2X00A 2YOEA 2XYTA 3TLSA 4PIRA 5J5IA 4HFCA 3PMZA 2BG9A 2XQ9A 5L4HA 4F8HA 4UM3A 3UQ4A 4TNVA 2PH9A 4Z91A 5HCMA 4LMKA 2XQ6A 3P4WA 4HFIA 5TVCA 1UW6A 2WNCA 5AFMA 2XZ6A 2QC1B 2YMDA 3JAFA 3UU3A 2YKSA 3WTIA 5J5GA 5FJVA 2WNJA 4IL9A 5AFLA 4WV9A 3TLWA 5SYOA 3UU6A 3WTKA 4A97A 5CFBA 5HEGA 5AFJA 2BR8A 2BG9E 2BR7A 2YN6A 4ALXA
chains in the Genus database with same CATH topology
5IUXA 5HEJA 5AFNA 2XYSA 4ZJTA 4QAAA 2BG9B 4UXUA 3EAMA 3UU5A 4QH4A 3T4MA 4QABA 5HEOA 2XNUA 4XK9A 3PEOA 5KE4A 3ZKRA 5J0ZA 3C79A 3WTLA 3SH1A 5AFMB 4IL4A 3TLVA 2XQ4A 3RI5A 5L47A 2C9TA 4HFBA 2X00D 3ZDHA 4ZR6A 3RIFA 4BQTA 4Z90A 3SIOA 4D01A 4ZK1A 3RIAA 4HFEA 4QH1A 5AFHA 4A98A 4QACA 2XZ5A 2BYRA 3WTJA 5J5HA 3UUBA 4TWDA 4ILBA 3C84A 1I9BA 5AFKA 4IREA 4AFHA 4HQPA 2BJ0A 2BYPA 3U8JA 1UV6A 5CO5A 3UU4A 5BW2A 2XNVA 2XQ7A 5KZUA 2BYNA 5BP0A 3JADA 2WNLA 2Y57A 3P50A 4NPPA 2BG9C 5HCJA 3WTHA 5AINA 2XQ8A 2ZJUA 2WN9A 4LMLA 2VL0A 3RQWA 4TWFA 3WTNA 4B5DA 4COFA 2Y56A 3EHZA 2Y58A 2BYQA 4BFQA 4ILCA 3IGQA 4ZZCA 5JMEA 4TWHA 4DBMA 4ZRUA 4UM3S 4X5TA 4FRRA 3U8NA 4HFHA 4ZZBA 5HEHA 4TNWA 4AFTA 2XQAA 3TLTA 3SQ9A 2W8FA 5BRXA 4ZJSA 4LMJA 3JAEA 5LXBA 4EZ1A 1UX2A 2ZJVA 4UM1A 4ZK4A 2UZ6A 3EI0A 3RHWA 3U8KA 2Y54A 5J5FA 2XQ3A 3GUAA 3TLUA 2XNTA 3U8MA 4UY2A 2Y7YA 4NZBA 3U8LA 2YMEA 4ILAA 4HFDA 5HEUA 3ZDGA 5L4EA 2WZYA 3WTMA 3RQUA 3LSVA 4UM3P 3UQ7A 4QH5A 3SQ6A 3UU8A 2PGZA 2BYSA 4AFGA 3WTOA 2W8GA 2XQ5A 3WIPA 4XHEA 5LG3A 2X00A 2YOEA 2XYTA 3TLSA 4PIRA 5J5IA 4HFCA 3PMZA 2BG9A 2XQ9A 5L4HA 4F8HA 4UM3A 3UQ4A 4TNVA 2PH9A 4Z91A 5HCMA 4LMKA 2XQ6A 3P4WA 4HFIA 5TVCA 1UW6A 2WNCA 5AFMA 2XZ6A 2QC1B 2YMDA 3JAFA 3UU3A 2YKSA 3WTIA 5J5GA 5FJVA 2WNJA 4IL9A 5AFLA 4WV9A 3TLWA 5SYOA 3UU6A 3WTKA 4A97A 5CFBA 5HEGA 5AFJA 2BR8A 2BG9E 2BR7A 2YN6A 4ALXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IUX A;  5HEJ A;  5AFN A;  2XYS A;  4ZJT A;  4QAA A;  2BG9 B;  4UXU A;  3EAM A;  3UU5 A;  4QH4 A;  3T4M A;  4QAB A;  5HEO A;  2XNU A;  4XK9 A;  3PEO A;  5KE4 A;  3ZKR A;  5J0Z A;  3C79 A;  3WTL A;  3SH1 A;  5AFM B;  4IL4 A;  3TLV A;  2XQ4 A;  3RI5 A;  5L47 A;  2C9T A;  4HFB A;  2X00 D;  3ZDH A;  4ZR6 A;  3RIF A;  4BQT A;  4Z90 A;  3SIO A;  4D01 A;  4ZK1 A;  3RIA A;  4HFE A;  4QH1 A;  5AFH A;  4A98 A;  4QAC A;  2XZ5 A;  2BYR A;  3WTJ A;  5J5H A;  3UUB A;  4TWD A;  4ILB A;  3C84 A;  1I9B A;  5AFK A;  4IRE A;  4AFH A;  4HQP A;  2BJ0 A;  2BYP A;  3U8J A;  1UV6 A;  5CO5 A;  3UU4 A;  5BW2 A;  2XNV A;  2XQ7 A;  5KZU A;  2BYN A;  5BP0 A;  3JAD A;  2WNL A;  2Y57 A;  3P50 A;  4NPP A;  2BG9 C;  5HCJ A;  3WTH A;  5AIN A;  2XQ8 A;  2ZJU A;  2WN9 A;  4LML A;  2VL0 A;  3RQW A;  4TWF A;  3WTN A;  4B5D A;  4COF A;  2Y56 A;  3EHZ A;  2Y58 A;  2BYQ A;  4BFQ A;  4ILC A;  3IGQ A;  4ZZC A;  5JME A;  4TWH A;  4DBM A;  4ZRU A;  4UM3 S;  4X5T A;  4FRR A;  3U8N A;  4HFH A;  4ZZB A;  5HEH A;  4TNW A;  4AFT A;  2XQA A;  3TLT A;  3SQ9 A;  2W8F A;  5BRX A;  4ZJS A;  4LMJ A;  3JAE A;  5LXB A;  4EZ1 A;  1UX2 A;  2ZJV A;  4UM1 A;  4ZK4 A;  2UZ6 A;  3EI0 A;  3RHW A;  3U8K A;  2Y54 A;  5J5F A;  2XQ3 A;  3GUA A;  3TLU A;  2XNT A;  3U8M A;  4UY2 A;  2Y7Y A;  4NZB A;  3U8L A;  2YME A;  4ILA A;  4HFD A;  5HEU A;  3ZDG A;  5L4E A;  2WZY A;  3WTM A;  3RQU A;  3LSV A;  4UM3 P;  3UQ7 A;  4QH5 A;  3SQ6 A;  3UU8 A;  2PGZ A;  2BYS A;  4AFG A;  3WTO A;  2W8G A;  2XQ5 A;  3WIP A;  4XHE A;  5LG3 A;  2X00 A;  2YOE A;  2XYT A;  3TLS A;  4PIR A;  5J5I A;  4HFC A;  3PMZ A;  2BG9 A;  2XQ9 A;  5L4H A;  4F8H A;  4UM3 A;  3UQ4 A;  4TNV A;  2PH9 A;  4Z91 A;  5HCM A;  4LMK A;  2XQ6 A;  3P4W A;  4HFI A;  5TVC A;  1UW6 A;  2WNC A;  5AFM A;  2XZ6 A;  2QC1 B;  2YMD A;  3JAF A;  3UU3 A;  2YKS A;  3WTI A;  5J5G A;  5FJV A;  2WNJ A;  4IL9 A;  5AFL A;  4WV9 A;  3TLW A;  5SYO A;  3UU6 A;  3WTK A;  4A97 A;  5CFB A;  5HEG A;  5AFJ A;  2BR8 A;  2BG9 E;  2BR7 A;  2YN6 A;  4ALX A; 
#chains in the Genus database with same CATH topology
 5IUX A;  5HEJ A;  5AFN A;  2XYS A;  4ZJT A;  4QAA A;  2BG9 B;  4UXU A;  3EAM A;  3UU5 A;  4QH4 A;  3T4M A;  4QAB A;  5HEO A;  2XNU A;  4XK9 A;  3PEO A;  5KE4 A;  3ZKR A;  5J0Z A;  3C79 A;  3WTL A;  3SH1 A;  5AFM B;  4IL4 A;  3TLV A;  2XQ4 A;  3RI5 A;  5L47 A;  2C9T A;  4HFB A;  2X00 D;  3ZDH A;  4ZR6 A;  3RIF A;  4BQT A;  4Z90 A;  3SIO A;  4D01 A;  4ZK1 A;  3RIA A;  4HFE A;  4QH1 A;  5AFH A;  4A98 A;  4QAC A;  2XZ5 A;  2BYR A;  3WTJ A;  5J5H A;  3UUB A;  4TWD A;  4ILB A;  3C84 A;  1I9B A;  5AFK A;  4IRE A;  4AFH A;  4HQP A;  2BJ0 A;  2BYP A;  3U8J A;  1UV6 A;  5CO5 A;  3UU4 A;  5BW2 A;  2XNV A;  2XQ7 A;  5KZU A;  2BYN A;  5BP0 A;  3JAD A;  2WNL A;  2Y57 A;  3P50 A;  4NPP A;  2BG9 C;  5HCJ A;  3WTH A;  5AIN A;  2XQ8 A;  2ZJU A;  2WN9 A;  4LML A;  2VL0 A;  3RQW A;  4TWF A;  3WTN A;  4B5D A;  4COF A;  2Y56 A;  3EHZ A;  2Y58 A;  2BYQ A;  4BFQ A;  4ILC A;  3IGQ A;  4ZZC A;  5JME A;  4TWH A;  4DBM A;  4ZRU A;  4UM3 S;  4X5T A;  4FRR A;  3U8N A;  4HFH A;  4ZZB A;  5HEH A;  4TNW A;  4AFT A;  2XQA A;  3TLT A;  3SQ9 A;  2W8F A;  5BRX A;  4ZJS A;  4LMJ A;  3JAE A;  5LXB A;  4EZ1 A;  1UX2 A;  2ZJV A;  4UM1 A;  4ZK4 A;  2UZ6 A;  3EI0 A;  3RHW A;  3U8K A;  2Y54 A;  5J5F A;  2XQ3 A;  3GUA A;  3TLU A;  2XNT A;  3U8M A;  4UY2 A;  2Y7Y A;  4NZB A;  3U8L A;  2YME A;  4ILA A;  4HFD A;  5HEU A;  3ZDG A;  5L4E A;  2WZY A;  3WTM A;  3RQU A;  3LSV A;  4UM3 P;  3UQ7 A;  4QH5 A;  3SQ6 A;  3UU8 A;  2PGZ A;  2BYS A;  4AFG A;  3WTO A;  2W8G A;  2XQ5 A;  3WIP A;  4XHE A;  5LG3 A;  2X00 A;  2YOE A;  2XYT A;  3TLS A;  4PIR A;  5J5I A;  4HFC A;  3PMZ A;  2BG9 A;  2XQ9 A;  5L4H A;  4F8H A;  4UM3 A;  3UQ4 A;  4TNV A;  2PH9 A;  4Z91 A;  5HCM A;  4LMK A;  2XQ6 A;  3P4W A;  4HFI A;  5TVC A;  1UW6 A;  2WNC A;  5AFM A;  2XZ6 A;  2QC1 B;  2YMD A;  3JAF A;  3UU3 A;  2YKS A;  3WTI A;  5J5G A;  5FJV A;  2WNJ A;  4IL9 A;  5AFL A;  4WV9 A;  3TLW A;  5SYO A;  3UU6 A;  3WTK A;  4A97 A;  5CFB A;  5HEG A;  5AFJ A;  2BR8 A;  2BG9 E;  2BR7 A;  2YN6 A;  4ALX A; 
#chains in the Genus database with same CATH homology
 5IUX A;  5HEJ A;  5AFN A;  2XYS A;  4ZJT A;  4QAA A;  2BG9 B;  4UXU A;  3EAM A;  3UU5 A;  4QH4 A;  3T4M A;  4QAB A;  5HEO A;  2XNU A;  4XK9 A;  3PEO A;  5KE4 A;  3ZKR A;  5J0Z A;  3C79 A;  3WTL A;  3SH1 A;  5AFM B;  4IL4 A;  3TLV A;  2XQ4 A;  3RI5 A;  5L47 A;  2C9T A;  4HFB A;  2X00 D;  3ZDH A;  4ZR6 A;  3RIF A;  4BQT A;  4Z90 A;  3SIO A;  4D01 A;  4ZK1 A;  3RIA A;  4HFE A;  4QH1 A;  5AFH A;  4A98 A;  4QAC A;  2XZ5 A;  2BYR A;  3WTJ A;  5J5H A;  3UUB A;  4TWD A;  4ILB A;  3C84 A;  1I9B A;  5AFK A;  4IRE A;  4AFH A;  4HQP A;  2BJ0 A;  2BYP A;  3U8J A;  1UV6 A;  5CO5 A;  3UU4 A;  5BW2 A;  2XNV A;  2XQ7 A;  5KZU A;  2BYN A;  5BP0 A;  3JAD A;  2WNL A;  2Y57 A;  3P50 A;  4NPP A;  2BG9 C;  5HCJ A;  3WTH A;  5AIN A;  2XQ8 A;  2ZJU A;  2WN9 A;  4LML A;  2VL0 A;  3RQW A;  4TWF A;  3WTN A;  4B5D A;  4COF A;  2Y56 A;  3EHZ A;  2Y58 A;  2BYQ A;  4BFQ A;  4ILC A;  3IGQ A;  4ZZC A;  5JME A;  4TWH A;  4DBM A;  4ZRU A;  4UM3 S;  4X5T A;  4FRR A;  3U8N A;  4HFH A;  4ZZB A;  5HEH A;  4TNW A;  4AFT A;  2XQA A;  3TLT A;  3SQ9 A;  2W8F A;  5BRX A;  4ZJS A;  4LMJ A;  3JAE A;  5LXB A;  4EZ1 A;  1UX2 A;  2ZJV A;  4UM1 A;  4ZK4 A;  2UZ6 A;  3EI0 A;  3RHW A;  3U8K A;  2Y54 A;  5J5F A;  2XQ3 A;  3GUA A;  3TLU A;  2XNT A;  3U8M A;  4UY2 A;  2Y7Y A;  4NZB A;  3U8L A;  2YME A;  4ILA A;  4HFD A;  5HEU A;  3ZDG A;  5L4E A;  2WZY A;  3WTM A;  3RQU A;  3LSV A;  4UM3 P;  3UQ7 A;  4QH5 A;  3SQ6 A;  3UU8 A;  2PGZ A;  2BYS A;  4AFG A;  3WTO A;  2W8G A;  2XQ5 A;  3WIP A;  4XHE A;  5LG3 A;  2X00 A;  2YOE A;  2XYT A;  3TLS A;  4PIR A;  5J5I A;  4HFC A;  3PMZ A;  2BG9 A;  2XQ9 A;  5L4H A;  4F8H A;  4UM3 A;  3UQ4 A;  4TNV A;  2PH9 A;  4Z91 A;  5HCM A;  4LMK A;  2XQ6 A;  3P4W A;  4HFI A;  5TVC A;  1UW6 A;  2WNC A;  5AFM A;  2XZ6 A;  2QC1 B;  2YMD A;  3JAF A;  3UU3 A;  2YKS A;  3WTI A;  5J5G A;  5FJV A;  2WNJ A;  4IL9 A;  5AFL A;  4WV9 A;  3TLW A;  5SYO A;  3UU6 A;  3WTK A;  4A97 A;  5CFB A;  5HEG A;  5AFJ A;  2BR8 A;  2BG9 E;  2BR7 A;  2YN6 A;  4ALX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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