5M3ME

Free monomeric rna polymerase i at 4.0a resolution
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
212
structure length
212
Chain Sequence
ENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-directed RNA polymerase I subunit RPA190
publication title Structure of RNA polymerase I transcribing ribosomal DNA genes.
pubmed doi rcsb
total genus 48
structure length 212
sequence length 212
ec nomenclature
pdb deposition date 2016-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
E PF03871 RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1340.10 Alpha Beta 3-Layer(aba) Sandwich Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1 RNA polymerase, Rpb5, N-terminal domain 5m3mE01
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 5m3mE02
3S1NE 2R93E 3M3YE 4A3IE 2NVQE 3S16E 3HOVE 3I4NE 4A3BE 4A3KE 1TWHE 5IYCE 5IP7E 3H0GE 3CQZE 2NVXE 4A3GE 3RZOE 4BBRE 3HOWE 5M5XE 4Y7NE 1Y1VE 3S1QE 5M5WE 2NVYE 3HOUE 1K83E 3GTPE 4C3JE 3I4ME 3FKIE 5M5YE 5IYBE 1TWCE 3S15E 2WAQH 5FJ8E 2WB1H 4A3EE 2JA5E 3PO2E 1EIKA 1DZFA 5M3FE 2PMZH 1I50E 4A3LE 4C2ME 2R92E 5C4XE 3GTJE 3HOZE 1WCME 4C3HE 3GTKE 2R7ZE 3GTLE 5C44E 1R9TE 5IP9E 4X6AE 2E2HE 3S2HE 1TWAE 1I3QE 3HOXE 2YU9E 5FLME 4BY1E 2JA8E 3GTQE 4BXXE 2VUME 3GTOE 4Y52E 3GTME 4BBSE 1TWGE 3M4OE 1I6HE 5C3EE 1TWFE 4A3DE 4A3ME 2JA6E 3S1ME 2E2JE 5IYDE 3K7AE 3S1RE 2JA7E 4A3FE 4BY7E 4A3JE 4A3CE 3H3VF 3S17E 3GTGE 2NVTE 4QIWH 4C3IE 3RZDE 2Y0SH 2B63E 1SFOE 1Y1WE 5M3ME 2E2IE 3HKZH 5C4JE 3S2DE 4A93E 3HOYE 4AYBH 3S14E 3PO3E
chains in the Genus database with same CATH superfamily
5IYDF 3H3VG 3S1NE 2R93E 3M3YE 2A69E 4A3IE 3K7AF 2NVQE 3S16E 3S1RF 2PPBE 3HOVE 5BYHE 4A3FF 3S16F 3I4NE 4BY7F 4A3JF 4A3BE 4A3CF 4OIOE 3I4NF 4XLNE 4A3KE 5E17E 4YG2E 1TWHE 3S17F 5IYCE 3GTGF 1TWHF 5IP7E 2NVTF 4XSXE 4C3IF 3RZDF 3H0GE 3CQZE 2NVXE 2BE5E 4A3GE 3HKZK 3H0GF 4Q4ZE 1SFOF 3RZOE 1Y1WF 4AYBK 5M3MF 4OIQE 4BBRE 4Q5SE 3HOWE 2E2IF 4GZYE 4BBRF 5M5XE 2A68E 5TMFE 3S2DF 4Y7NE 4MQ9E 4A93F 1Y1VE 3S1QE 4G7OE 3S14F 1YNJK 4YFXE 5M5WE 2NVYE 3HOUE 3PO3F 1K83E 4LK0E 4YFNE 3S1NF 2R93F 3M3YF 4A3IF 3GTPE 4C3JE 3I4ME 2NVQF 4OIPE 3FKIE 4C3JF 3HOVF 5M5YE 4QIWK 2CW0E 2A6EE 4A3BF 3WODE 4A3KF 5IYBE 1TWCE 3S15E 5IYCF 2WAQH 5FJ8E 2WB1H 4A3EE 5IP7F 2O5JE 2JA5E 3PO2E 1EIKA 1DZFA 5M3FE 4LK1E 2WB1I 3CQZF 2NVXF 4ZH4E 4A3GF 2PMZH 4XLPE 1I50E 4A3LE 3RZOF 4C2ME 2R92E 5C4XE 3GTJE 3HOZE 1ZYRE 3HOWF 4KN7E 1WCME 5M5XF 4C3HE 3GTKE 1IW7E 4LLGE 2R7ZE 3GTLE 5C44E 1Y1VF 4C3HF 4Y7NF 3S1QF 5IPLE 2R7ZF 1YNNK 1R9TE 5C44F 5M5WF 5IP9E 2NVYF 3HOUF 4X6AE 2E2HE 1K83F 5IP9F 3S2HE 1TWAE 1I3QE 3HOXE 2YU9E 5FLME 4BY1E 3S2HF 2JA8E 4KMUE 3GTQE 4BXXE 5TMCE 4BY1F 5FLMF 5D4CE 2VUME 3GTOE 2JA8F 3FKIF 3GTPF 3I4MF 4Y52E 5M5YF 4G7HE 2O5IE 1SMYE 3GTME 4BBSE 5D4DE 5IYBF 1TWCF 1TWGE 3M4OE 3GTMF 3S15F 5FJ8F 4JK1E 4A3EF 1I6HE 5C3EE 1TWFE 2JA5F 3PO2F 4A3DE 4A3ME 2JA6E 3S1ME 5M3FF 1I6HF 5E18E 2E2JE 5IYDE 2A6HE 2E2JF 1I50F 4A3LF 4C2MF 4G7ZE 4MEXE 4OINE 2R92F 3K7AE 5C4XF 5D4EE 3GTJF 3HOZF 3S1RE 2JA7E 1QKLA 1WCMF 4A3FE 3GTKF 4BY7E 4A3JE 2JA7F 4A3CE 1I6VE 3H3VF 3DXJE 4LJZE 3GTLF 1R9TF 3S17E 4YFKE 3GTGE 4X6AF 2E2HF 2NVTE 1I3QF 1TWAF 4KN4E 3HOXF 4MEYE 4QIWH 4C3IE 2YU9F 3RZDE 4OIRE 3GTQF 2Y0SH 4BXXF 2B63E 1SFOE 2WAQK 4XSZE 2VUMF 3GTOF 2B63F 1Y1WE 4Y52F 5M3ME 2KRXA 2Y0SI 2E2IE 3HKZH 4BBSF 5C4JE 3S2DE 2PMZK 1TWGF 4A93E 3M4OF 3HOYE 5C4JF 4AYBH 3S14E 5C3EF 3HOYF 1HQME 1TWFF 3PO3E 4A3DF 4A3MF 2JA6F 3S1MF 3EQLE
chains in the Genus database with same CATH topology
3S1NE 2R93E 3M3YE 4A3IE 2NVQE 3S16E 3HOVE 3I4NE 4A3BE 4A3KE 1TWHE 5IYCE 5IP7E 3H0GE 3CQZE 2NVXE 4A3GE 3RZOE 4BBRE 3HOWE 5M5XE 4Y7NE 1Y1VE 3S1QE 5M5WE 2NVYE 3HOUE 1K83E 3GTPE 4C3JE 3I4ME 3FKIE 5M5YE 5IYBE 1TWCE 3S15E 2WAQH 5FJ8E 2WB1H 4A3EE 2JA5E 3PO2E 1EIKA 1DZFA 5M3FE 2PMZH 1I50E 4A3LE 4C2ME 2R92E 5C4XE 3GTJE 3HOZE 1WCME 4C3HE 3GTKE 2R7ZE 3GTLE 5C44E 1R9TE 5IP9E 4X6AE 2E2HE 3S2HE 1TWAE 1I3QE 3HOXE 2YU9E 5FLME 4BY1E 2JA8E 3GTQE 4BXXE 2VUME 3GTOE 4Y52E 3GTME 4BBSE 1TWGE 3M4OE 1I6HE 5C3EE 1TWFE 4A3DE 4A3ME 2JA6E 3S1ME 2E2JE 5IYDE 3K7AE 3S1RE 2JA7E 4A3FE 4BY7E 4A3JE 4A3CE 3H3VF 3S17E 3GTGE 2NVTE 4QIWH 4C3IE 3RZDE 2Y0SH 2B63E 1SFOE 1Y1WE 5M3ME 2E2IE 3HKZH 5C4JE 3S2DE 4A93E 3HOYE 4AYBH 3S14E 3PO3E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S1N E;  2R93 E;  3M3Y E;  4A3I E;  2NVQ E;  3S16 E;  3HOV E;  3I4N E;  4A3B E;  4A3K E;  1TWH E;  5IYC E;  5IP7 E;  3H0G E;  3CQZ E;  2NVX E;  4A3G E;  3RZO E;  4BBR E;  3HOW E;  5M5X E;  4Y7N E;  1Y1V E;  3S1Q E;  5M5W E;  2NVY E;  3HOU E;  1K83 E;  3GTP E;  4C3J E;  3I4M E;  3FKI E;  5M5Y E;  5IYB E;  1TWC E;  3S15 E;  2WAQ H;  5FJ8 E;  2WB1 H;  4A3E E;  2JA5 E;  3PO2 E;  1EIK A;  1DZF A;  5M3F E;  2PMZ H;  1I50 E;  4A3L E;  4C2M E;  2R92 E;  5C4X E;  3GTJ E;  3HOZ E;  1WCM E;  4C3H E;  3GTK E;  2R7Z E;  3GTL E;  5C44 E;  1R9T E;  5IP9 E;  4X6A E;  2E2H E;  3S2H E;  1TWA E;  1I3Q E;  3HOX E;  2YU9 E;  5FLM E;  4BY1 E;  2JA8 E;  3GTQ E;  4BXX E;  2VUM E;  3GTO E;  4Y52 E;  3GTM E;  4BBS E;  1TWG E;  3M4O E;  1I6H E;  5C3E E;  1TWF E;  4A3D E;  4A3M E;  2JA6 E;  3S1M E;  2E2J E;  5IYD E;  3K7A E;  3S1R E;  2JA7 E;  4A3F E;  4BY7 E;  4A3J E;  4A3C E;  3H3V F;  3S17 E;  3GTG E;  2NVT E;  4QIW H;  4C3I E;  3RZD E;  2Y0S H;  2B63 E;  1SFO E;  1Y1W E;  5M3M E;  2E2I E;  3HKZ H;  5C4J E;  3S2D E;  4A93 E;  3HOY E;  4AYB H;  3S14 E;  3PO3 E; 
#chains in the Genus database with same CATH topology
 5IYD F;  3H3V G;  3S1N E;  2R93 E;  3M3Y E;  2A69 E;  4A3I E;  3K7A F;  2NVQ E;  3S16 E;  3S1R F;  2PPB E;  3HOV E;  5BYH E;  4A3F F;  3S16 F;  3I4N E;  4BY7 F;  4A3J F;  4A3B E;  4A3C F;  4OIO E;  3I4N F;  4XLN E;  4A3K E;  5E17 E;  4YG2 E;  1TWH E;  3S17 F;  5IYC E;  3GTG F;  1TWH F;  5IP7 E;  2NVT F;  4XSX E;  4C3I F;  3RZD F;  3H0G E;  3CQZ E;  2NVX E;  2BE5 E;  4A3G E;  3HKZ K;  3H0G F;  4Q4Z E;  1SFO F;  3RZO E;  1Y1W F;  4AYB K;  5M3M F;  4OIQ E;  4BBR E;  4Q5S E;  3HOW E;  2E2I F;  4GZY E;  4BBR F;  5M5X E;  2A68 E;  5TMF E;  3S2D F;  4Y7N E;  4MQ9 E;  4A93 F;  1Y1V E;  3S1Q E;  4G7O E;  3S14 F;  1YNJ K;  4YFX E;  5M5W E;  2NVY E;  3HOU E;  3PO3 F;  1K83 E;  4LK0 E;  4YFN E;  3S1N F;  2R93 F;  3M3Y F;  4A3I F;  3GTP E;  4C3J E;  3I4M E;  2NVQ F;  4OIP E;  3FKI E;  4C3J F;  3HOV F;  5M5Y E;  4QIW K;  2CW0 E;  2A6E E;  4A3B F;  3WOD E;  4A3K F;  5IYB E;  1TWC E;  3S15 E;  5IYC F;  2WAQ H;  5FJ8 E;  2WB1 H;  4A3E E;  5IP7 F;  2O5J E;  2JA5 E;  3PO2 E;  1EIK A;  1DZF A;  5M3F E;  4LK1 E;  2WB1 I;  3CQZ F;  2NVX F;  4ZH4 E;  4A3G F;  2PMZ H;  4XLP E;  1I50 E;  4A3L E;  3RZO F;  4C2M E;  2R92 E;  5C4X E;  3GTJ E;  3HOZ E;  1ZYR E;  3HOW F;  4KN7 E;  1WCM E;  5M5X F;  4C3H E;  3GTK E;  1IW7 E;  4LLG E;  2R7Z E;  3GTL E;  5C44 E;  1Y1V F;  4C3H F;  4Y7N F;  3S1Q F;  5IPL E;  2R7Z F;  1YNN K;  1R9T E;  5C44 F;  5M5W F;  5IP9 E;  2NVY F;  3HOU F;  4X6A E;  2E2H E;  1K83 F;  5IP9 F;  3S2H E;  1TWA E;  1I3Q E;  3HOX E;  2YU9 E;  5FLM E;  4BY1 E;  3S2H F;  2JA8 E;  4KMU E;  3GTQ E;  4BXX E;  5TMC E;  4BY1 F;  5FLM F;  5D4C E;  2VUM E;  3GTO E;  2JA8 F;  3FKI F;  3GTP F;  3I4M F;  4Y52 E;  5M5Y F;  4G7H E;  2O5I E;  1SMY E;  3GTM E;  4BBS E;  5D4D E;  5IYB F;  1TWC F;  1TWG E;  3M4O E;  3GTM F;  3S15 F;  5FJ8 F;  4JK1 E;  4A3E F;  1I6H E;  5C3E E;  1TWF E;  2JA5 F;  3PO2 F;  4A3D E;  4A3M E;  2JA6 E;  3S1M E;  5M3F F;  1I6H F;  5E18 E;  2E2J E;  5IYD E;  2A6H E;  2E2J F;  1I50 F;  4A3L F;  4C2M F;  4G7Z E;  4MEX E;  4OIN E;  2R92 F;  3K7A E;  5C4X F;  5D4E E;  3GTJ F;  3HOZ F;  3S1R E;  2JA7 E;  1QKL A;  1WCM F;  4A3F E;  3GTK F;  4BY7 E;  4A3J E;  2JA7 F;  4A3C E;  1I6V E;  3H3V F;  3DXJ E;  4LJZ E;  3GTL F;  1R9T F;  3S17 E;  4YFK E;  3GTG E;  4X6A F;  2E2H F;  2NVT E;  1I3Q F;  1TWA F;  4KN4 E;  3HOX F;  4MEY E;  4QIW H;  4C3I E;  2YU9 F;  3RZD E;  4OIR E;  3GTQ F;  2Y0S H;  4BXX F;  2B63 E;  1SFO E;  2WAQ K;  4XSZ E;  2VUM F;  3GTO F;  2B63 F;  1Y1W E;  4Y52 F;  5M3M E;  2KRX A;  2Y0S I;  2E2I E;  3HKZ H;  4BBS F;  5C4J E;  3S2D E;  2PMZ K;  1TWG F;  4A93 E;  3M4O F;  3HOY E;  5C4J F;  4AYB H;  3S14 E;  5C3E F;  3HOY F;  1HQM E;  1TWF F;  3PO3 E;  4A3D F;  4A3M F;  2JA6 F;  3S1M F;  3EQL E; 
#chains in the Genus database with same CATH homology
 3S1N E;  2R93 E;  3M3Y E;  4A3I E;  2NVQ E;  3S16 E;  3HOV E;  3I4N E;  4A3B E;  4A3K E;  1TWH E;  5IYC E;  5IP7 E;  3H0G E;  3CQZ E;  2NVX E;  4A3G E;  3RZO E;  4BBR E;  3HOW E;  5M5X E;  4Y7N E;  1Y1V E;  3S1Q E;  5M5W E;  2NVY E;  3HOU E;  1K83 E;  3GTP E;  4C3J E;  3I4M E;  3FKI E;  5M5Y E;  5IYB E;  1TWC E;  3S15 E;  2WAQ H;  5FJ8 E;  2WB1 H;  4A3E E;  2JA5 E;  3PO2 E;  1EIK A;  1DZF A;  5M3F E;  2PMZ H;  1I50 E;  4A3L E;  4C2M E;  2R92 E;  5C4X E;  3GTJ E;  3HOZ E;  1WCM E;  4C3H E;  3GTK E;  2R7Z E;  3GTL E;  5C44 E;  1R9T E;  5IP9 E;  4X6A E;  2E2H E;  3S2H E;  1TWA E;  1I3Q E;  3HOX E;  2YU9 E;  5FLM E;  4BY1 E;  2JA8 E;  3GTQ E;  4BXX E;  2VUM E;  3GTO E;  4Y52 E;  3GTM E;  4BBS E;  1TWG E;  3M4O E;  1I6H E;  5C3E E;  1TWF E;  4A3D E;  4A3M E;  2JA6 E;  3S1M E;  2E2J E;  5IYD E;  3K7A E;  3S1R E;  2JA7 E;  4A3F E;  4BY7 E;  4A3J E;  4A3C E;  3H3V F;  3S17 E;  3GTG E;  2NVT E;  4QIW H;  4C3I E;  3RZD E;  2Y0S H;  2B63 E;  1SFO E;  1Y1W E;  5M3M E;  2E2I E;  3HKZ H;  5C4J E;  3S2D E;  4A93 E;  3HOY E;  4AYB H;  3S14 E;  3PO3 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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