5M3ML

Free monomeric rna polymerase i at 4.0a resolution
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
44
structure length
44
Chain Sequence
LKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase I subunit RPA190
publication title Structure of RNA polymerase I transcribing ribosomal DNA genes.
pubmed doi rcsb
molecule tags Transcription
total genus 2
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2016-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5m3mL00
1K83L 5M3ML 3S1QL 1I3QL 3S17L 3HOZL 1R9TL 4Y7NL 3H3VM 3S1NL 5C4JL 1Y1VL 4C3IL 4A93L 3GTLL 2R92L 5IYCL 4Y52L 4BBSL 5M5YL 3HOWL 2Y0SP 4BXXL 3S16L 3GTGL 3S14L 4BY1L 3S2HL 2PMZP 3RZOL 3GTQL 3PO3L 3M3YL 1TWGL 5M5XL 2R93L 4QIWP 2JA5L 2WAQP 4A3FL 4A3KL 4A3JL 2R7ZL 5IP9L 3S1RL 1SFOL 3RZDL 3I4NL 4AYBP 3PO2L 3M4OL 2NVXL 4BY7L 2JA7L 3HOUL 4A3IL 3GTKL 4A3EL 2VUML 3CQZL 5IP7L 2YU9L 5M3FL 4A3DL 5IYDL 2JA6L 5FLML 4X6AL 5C3EL 3GTML 1WCML 3GTPL 3GTJL 4A3LL 3GTOL 4BBRL 2E2IL 2NVTL 4C3HL 1TWHL 3S1ML 2E2HL 3HOYL 3HKZP 1I6HL 3FKIL 1I50L 2E2JL 3HOXL 1TWAL 4A3BL 4A3GL 1TWCL 2JA8L 4A3ML 5FJ8L 4C2M1 2WB1P 2B63L 3HOVL 2NVYL 4C3JL 5M5WL 5C44L 1Y1WL 4A3CL 2NVQL 3S15L 1TWFL 3K7AL 3H0GL 3I4ML 3S2DL 5IYBL 5C4XL
chains in the Genus database with same CATH superfamily
2XJVA 3S1QL 3HOZL 4Y7NL 2XJSA 5C4JL 1S24A 3H97A 4C3IL 3GTLL 1H7VA 2R92L 2B5ID 2Z3QB 3LNLA 5H1Sc 3HAXC 2Y0SP 1SMMA 3PKJA 3HJWB 1LKMA 2C6AA 2XJUA 4K9FA 2HR5A 2KKDA 5M5XL 4QIWP 2JA5L 5DM61 5AI2A 1LTLA 1R0GA 4A3FL 5K2ME 3VPBE 1S30A 2PVXA 1BFYA 4E6YA 1VCXA 1YUXA 4A3EL 3MQKB 1PFYA 2DSXA 4AHWA 1IW7D 4POFA 2JA6L 3QQCE 4X6AL 4JAGA 4V196 1LKPA 1WCML 3GTPL 1B71A 3H99A 2Z3RB 3PIO1 4RXNA 2NVTL 3A44A 2PVEA 1DX8A 4C3HL 2M4VA 3KYVA 3HKZP 4G6BA 2O5JD 3KYYA 4A3BL 1BQ8A 3HJYB 2AQCA 1CADA 3H9CA 3MSUA 3PIP1 2AYJA 1NNQA 2V0EA 3H9BA 5FJ8L 2VL6A 4C2M1 2WB1P 1R0IA 2V3BB 2C6BA 1Y1WL 3KYUA 3P8BA 4AI2A 1VZHA 2JI1A 1K83L 2M6PA 1DVBA 1I3QL 1T9PA 1S2ZA 1Y1VL 6RXNA 1B2OA 2H12A 5RXNA 4JADA 4ZN1B 1B2JA 1BQ9A 3LWQB 3PWFA 3LWPB 3IU3I 5M5YL 2MS3A 4ME3A 2XJQA 4TPUA 1RYQA 3S16L 3GTGL 1IROA 3M3YL 1C09A 4A3KL 1IU6A 1E8JA 4AHYA 4A3JL 2LCQA 3S1RL 3RZDL 3PO2L 3M4OL 4AHXA 2NVXL 4BY7L 4A3IL 2PYAA 4LHLA 1BE7A 1PZXA 2YU9L 5M3FL 4ZN3B 2QL0A 5MGNA 4AR4A 5C3EL 3QVDA 3GTML 2CR8A 3PKIA 4YWLA 1CAAA 1TWHL 2E2HL 1LKOA 5EIOC 3FKIL 1I50L 1R0JA 3RZTA 3MPSA 3ZG6A 4XXBB 1P7PA 4AHZA 4AI3A 5AI3A 2JA8L 3RYGA 2B63L 2CKAA 5M5WL 5C44L 3B08B 4AR6A 5GAEc 3H0GL 4AI1A 3I4ML 4U671 3RZ6A 5IYBL 3H3VM 3S1NL 1SMUA 3JR7A 4A93L 2EY4E 3B0AB 4JAFA 2A6HD 5IYCL 4Y52L 4BBSL 3HOWL 4TVMA 4BXXL 1SMWA 1RB9A 5JVG1 4BY1L 3S2HL 2PMZP 2PPTA 2XJTA 3RZOL 4AI0A 1TWGL 2CKCA 2WAQP 1RYTA 3KYWA 5MLC3 3PZAA 1WJVA 1T9OA 4JAEA 2JA7L 3PL5A 3HOUL 2M6OA 2RFKB 2VUML 1VZGA 3CQZL 3LWRB 5IYDL 1OWBA 5DM71 3FDJA 5MFZA 1FHMA 3LWVB 3GTJL 1R0FA 1ODHA 2E2IL 1JYBA 3S1ML 3HOYL 1PFVA 2A6ED 2M4YA 1I6HL 1IU5A 2JI3A 3WWLA 3NFPI 2E2JL 3HOXL 4B8CD 1TWAL 1YV1A 1VZIA 2L0ZA 1QYBA 1TWCL 2KN9A 4A3ML 1YUZA 4UY81 1YK4A 3HOVL 5GADc 2A68D 3K35A 5EINC 3S15L 5GAHc 3K7AL 3J7Y1 5MF6A 1R0HA 3S2DL 4XGHA 5M3ML 3S17L 1R9TL 1IRNA 1FHHA 2NYDA 2GMGA 1BRFA 3S14L 1PFWA 5MFPA 5GAGc 2PSMC 1OWCA 4AR5A 3GTQL 3PO3L 2R93L 1PFUA 2ERJA 2BE5D 1ZRPA 2V0FA 8RXNA 1QCVA 3SS2A 2APOB 5IY0A 1F4LA 4YWMA 2JI2A 2R7ZL 5IP9L 1SFOL 3P2AA 3I4NL 4AYBP 4LHNA 3GTKL 3WWNB 1T9QA 4POGA 5IP7L 1NXGA 5AN9H 2K2DA 4A3DL 5FLML 3LPEB 2XJRA 4A3LL 5JVH1 2ZIXA 4WFN1 3GTOL 4BBRL 2HVYC 3J7Z1 4GS7D 1QQTA 2AUSB 2A69D 1NXEA 3LWOB 7RXNA 4AR3A 1Z92B 1RDVA 4A3GL 1RDGA 1B13A 1RWDA 1YK5A 2XJPA 2RDVA 2J9UB 2ERSA 2NVYL 4C3JL 4A3CL 2NVQL 1TWFL 3KYXA 5C4XL
chains in the Genus database with same CATH topology
1K83L 5M3ML 3S1QL 1I3QL 3S17L 3HOZL 1R9TL 4Y7NL 3H3VM 3S1NL 5C4JL 1Y1VL 4C3IL 4A93L 3GTLL 2R92L 5IYCL 4Y52L 4BBSL 5M5YL 3HOWL 2Y0SP 4BXXL 3S16L 3GTGL 3S14L 4BY1L 3S2HL 2PMZP 3RZOL 3GTQL 3PO3L 3M3YL 1TWGL 5M5XL 2R93L 4QIWP 2JA5L 2WAQP 4A3FL 4A3KL 4A3JL 2R7ZL 5IP9L 3S1RL 1SFOL 3RZDL 3I4NL 4AYBP 3PO2L 3M4OL 2NVXL 4BY7L 2JA7L 3HOUL 4A3IL 3GTKL 4A3EL 2VUML 3CQZL 5IP7L 2YU9L 5M3FL 4A3DL 5IYDL 2JA6L 5FLML 4X6AL 5C3EL 3GTML 1WCML 3GTPL 3GTJL 4A3LL 3GTOL 4BBRL 2E2IL 2NVTL 4C3HL 1TWHL 3S1ML 2E2HL 3HOYL 3HKZP 1I6HL 3FKIL 1I50L 2E2JL 3HOXL 1TWAL 4A3BL 4A3GL 1TWCL 2JA8L 4A3ML 5FJ8L 4C2M1 2WB1P 2B63L 3HOVL 2NVYL 4C3JL 5M5WL 5C44L 1Y1WL 4A3CL 2NVQL 3S15L 1TWFL 3K7AL 3H0GL 3I4ML 3S2DL 5IYBL 5C4XL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K83 L;  5M3M L;  3S1Q L;  1I3Q L;  3S17 L;  3HOZ L;  1R9T L;  4Y7N L;  3H3V M;  3S1N L;  5C4J L;  1Y1V L;  4C3I L;  4A93 L;  3GTL L;  2R92 L;  5IYC L;  4Y52 L;  4BBS L;  5M5Y L;  3HOW L;  2Y0S P;  4BXX L;  3S16 L;  3GTG L;  3S14 L;  4BY1 L;  3S2H L;  2PMZ P;  3RZO L;  3GTQ L;  3PO3 L;  3M3Y L;  1TWG L;  5M5X L;  2R93 L;  4QIW P;  2JA5 L;  2WAQ P;  4A3F L;  4A3K L;  4A3J L;  2R7Z L;  5IP9 L;  3S1R L;  1SFO L;  3RZD L;  3I4N L;  4AYB P;  3PO2 L;  3M4O L;  2NVX L;  4BY7 L;  2JA7 L;  3HOU L;  4A3I L;  3GTK L;  4A3E L;  2VUM L;  3CQZ L;  5IP7 L;  2YU9 L;  5M3F L;  4A3D L;  5IYD L;  2JA6 L;  5FLM L;  4X6A L;  5C3E L;  3GTM L;  1WCM L;  3GTP L;  3GTJ L;  4A3L L;  3GTO L;  4BBR L;  2E2I L;  2NVT L;  4C3H L;  1TWH L;  3S1M L;  2E2H L;  3HOY L;  3HKZ P;  1I6H L;  3FKI L;  1I50 L;  2E2J L;  3HOX L;  1TWA L;  4A3B L;  4A3G L;  1TWC L;  2JA8 L;  4A3M L;  5FJ8 L;  4C2M 1;  2WB1 P;  2B63 L;  3HOV L;  2NVY L;  4C3J L;  5M5W L;  5C44 L;  1Y1W L;  4A3C L;  2NVQ L;  3S15 L;  1TWF L;  3K7A L;  3H0G L;  3I4M L;  3S2D L;  5IYB L;  5C4X L; 
#chains in the Genus database with same CATH topology
 2XJV A;  3S1Q L;  3HOZ L;  4Y7N L;  2XJS A;  5C4J L;  1S24 A;  3H97 A;  4C3I L;  3GTL L;  1H7V A;  2R92 L;  2B5I D;  2Z3Q B;  3LNL A;  5H1S c;  3HAX C;  2Y0S P;  1SMM A;  3PKJ A;  3HJW B;  1LKM A;  2C6A A;  2XJU A;  4K9F A;  2HR5 A;  2KKD A;  5M5X L;  4QIW P;  2JA5 L;  5DM6 1;  5AI2 A;  1LTL A;  1R0G A;  4A3F L;  5K2M E;  3VPB E;  1S30 A;  2PVX A;  1BFY A;  4E6Y A;  1VCX A;  1YUX A;  4A3E L;  3MQK B;  1PFY A;  2DSX A;  4AHW A;  1IW7 D;  4POF A;  2JA6 L;  3QQC E;  4X6A L;  4JAG A;  4V19 6;  1LKP A;  1WCM L;  3GTP L;  1B71 A;  3H99 A;  2Z3R B;  3PIO 1;  4RXN A;  2NVT L;  3A44 A;  2PVE A;  1DX8 A;  4C3H L;  2M4V A;  3KYV A;  3HKZ P;  4G6B A;  2O5J D;  3KYY A;  4A3B L;  1BQ8 A;  3HJY B;  2AQC A;  1CAD A;  3H9C A;  3MSU A;  3PIP 1;  2AYJ A;  1NNQ A;  2V0E A;  3H9B A;  5FJ8 L;  2VL6 A;  4C2M 1;  2WB1 P;  1R0I A;  2V3B B;  2C6B A;  1Y1W L;  3KYU A;  3P8B A;  4AI2 A;  1VZH A;  2JI1 A;  1K83 L;  2M6P A;  1DVB A;  1I3Q L;  1T9P A;  1S2Z A;  1Y1V L;  6RXN A;  1B2O A;  2H12 A;  5RXN A;  4JAD A;  4ZN1 B;  1B2J A;  1BQ9 A;  3LWQ B;  3PWF A;  3LWP B;  3IU3 I;  5M5Y L;  2MS3 A;  4ME3 A;  2XJQ A;  4TPU A;  1RYQ A;  3S16 L;  3GTG L;  1IRO A;  3M3Y L;  1C09 A;  4A3K L;  1IU6 A;  1E8J A;  4AHY A;  4A3J L;  2LCQ A;  3S1R L;  3RZD L;  3PO2 L;  3M4O L;  4AHX A;  2NVX L;  4BY7 L;  4A3I L;  2PYA A;  4LHL A;  1BE7 A;  1PZX A;  2YU9 L;  5M3F L;  4ZN3 B;  2QL0 A;  5MGN A;  4AR4 A;  5C3E L;  3QVD A;  3GTM L;  2CR8 A;  3PKI A;  4YWL A;  1CAA A;  1TWH L;  2E2H L;  1LKO A;  5EIO C;  3FKI L;  1I50 L;  1R0J A;  3RZT A;  3MPS A;  3ZG6 A;  4XXB B;  1P7P A;  4AHZ A;  4AI3 A;  5AI3 A;  2JA8 L;  3RYG A;  2B63 L;  2CKA A;  5M5W L;  5C44 L;  3B08 B;  4AR6 A;  5GAE c;  3H0G L;  4AI1 A;  3I4M L;  4U67 1;  3RZ6 A;  5IYB L;  3H3V M;  3S1N L;  1SMU A;  3JR7 A;  4A93 L;  2EY4 E;  3B0A B;  4JAF A;  2A6H D;  5IYC L;  4Y52 L;  4BBS L;  3HOW L;  4TVM A;  4BXX L;  1SMW A;  1RB9 A;  5JVG 1;  4BY1 L;  3S2H L;  2PMZ P;  2PPT A;  2XJT A;  3RZO L;  4AI0 A;  1TWG L;  2CKC A;  2WAQ P;  1RYT A;  3KYW A;  5MLC 3;  3PZA A;  1WJV A;  1T9O A;  4JAE A;  2JA7 L;  3PL5 A;  3HOU L;  2M6O A;  2RFK B;  2VUM L;  1VZG A;  3CQZ L;  3LWR B;  5IYD L;  1OWB A;  5DM7 1;  3FDJ A;  5MFZ A;  1FHM A;  3LWV B;  3GTJ L;  1R0F A;  1ODH A;  2E2I L;  1JYB A;  3S1M L;  3HOY L;  1PFV A;  2A6E D;  2M4Y A;  1I6H L;  1IU5 A;  2JI3 A;  3WWL A;  3NFP I;  2E2J L;  3HOX L;  4B8C D;  1TWA L;  1YV1 A;  1VZI A;  2L0Z A;  1QYB A;  1TWC L;  2KN9 A;  4A3M L;  1YUZ A;  4UY8 1;  1YK4 A;  3HOV L;  5GAD c;  2A68 D;  3K35 A;  5EIN C;  3S15 L;  5GAH c;  3K7A L;  3J7Y 1;  5MF6 A;  1R0H A;  3S2D L;  4XGH A;  5M3M L;  3S17 L;  1R9T L;  1IRN A;  1FHH A;  2NYD A;  2GMG A;  1BRF A;  3S14 L;  1PFW A;  5MFP A;  5GAG c;  2PSM C;  1OWC A;  4AR5 A;  3GTQ L;  3PO3 L;  2R93 L;  1PFU A;  2ERJ A;  2BE5 D;  1ZRP A;  2V0F A;  8RXN A;  1QCV A;  3SS2 A;  2APO B;  5IY0 A;  1F4L A;  4YWM A;  2JI2 A;  2R7Z L;  5IP9 L;  1SFO L;  3P2A A;  3I4N L;  4AYB P;  4LHN A;  3GTK L;  3WWN B;  1T9Q A;  4POG A;  5IP7 L;  1NXG A;  5AN9 H;  2K2D A;  4A3D L;  5FLM L;  3LPE B;  2XJR A;  4A3L L;  5JVH 1;  2ZIX A;  4WFN 1;  3GTO L;  4BBR L;  2HVY C;  3J7Z 1;  4GS7 D;  1QQT A;  2AUS B;  2A69 D;  1NXE A;  3LWO B;  7RXN A;  4AR3 A;  1Z92 B;  1RDV A;  4A3G L;  1RDG A;  1B13 A;  1RWD A;  1YK5 A;  2XJP A;  2RDV A;  2J9U B;  2ERS A;  2NVY L;  4C3J L;  4A3C L;  2NVQ L;  1TWF L;  3KYX A;  5C4X L; 
#chains in the Genus database with same CATH homology
 1K83 L;  5M3M L;  3S1Q L;  1I3Q L;  3S17 L;  3HOZ L;  1R9T L;  4Y7N L;  3H3V M;  3S1N L;  5C4J L;  1Y1V L;  4C3I L;  4A93 L;  3GTL L;  2R92 L;  5IYC L;  4Y52 L;  4BBS L;  5M5Y L;  3HOW L;  2Y0S P;  4BXX L;  3S16 L;  3GTG L;  3S14 L;  4BY1 L;  3S2H L;  2PMZ P;  3RZO L;  3GTQ L;  3PO3 L;  3M3Y L;  1TWG L;  5M5X L;  2R93 L;  4QIW P;  2JA5 L;  2WAQ P;  4A3F L;  4A3K L;  4A3J L;  2R7Z L;  5IP9 L;  3S1R L;  1SFO L;  3RZD L;  3I4N L;  4AYB P;  3PO2 L;  3M4O L;  2NVX L;  4BY7 L;  2JA7 L;  3HOU L;  4A3I L;  3GTK L;  4A3E L;  2VUM L;  3CQZ L;  5IP7 L;  2YU9 L;  5M3F L;  4A3D L;  5IYD L;  2JA6 L;  5FLM L;  4X6A L;  5C3E L;  3GTM L;  1WCM L;  3GTP L;  3GTJ L;  4A3L L;  3GTO L;  4BBR L;  2E2I L;  2NVT L;  4C3H L;  1TWH L;  3S1M L;  2E2H L;  3HOY L;  3HKZ P;  1I6H L;  3FKI L;  1I50 L;  2E2J L;  3HOX L;  1TWA L;  4A3B L;  4A3G L;  1TWC L;  2JA8 L;  4A3M L;  5FJ8 L;  4C2M 1;  2WB1 P;  2B63 L;  3HOV L;  2NVY L;  4C3J L;  5M5W L;  5C44 L;  1Y1W L;  4A3C L;  2NVQ L;  3S15 L;  1TWF L;  3K7A L;  3H0G L;  3I4M L;  3S2D L;  5IYB L;  5C4X L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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