5M5XE

Rna polymerase i elongation complex 1
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
214
structure length
214
Chain Sequence
DQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-directed RNA polymerase I subunit RPA190
publication title Molecular Structures of Transcribing RNA Polymerase I.
pubmed doi rcsb
total genus 47
structure length 214
sequence length 214
ec nomenclature
pdb deposition date 2016-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
E PF03871 RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1340.10 Alpha Beta 3-Layer(aba) Sandwich Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1 RNA polymerase, Rpb5, N-terminal domain 5m5xE01
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 5m5xE02
4BBRE 3I4NE 1TWAE 3GTGE 2R93E 5FJ8E 4BBSE 1EIKA 2E2HE 3GTPE 3H0GE 3I4ME 3GTQE 4A3LE 3GTJE 4C3HE 4A3JE 1WCME 3S17E 2JA8E 4C3JE 1I3QE 3S2HE 5M5YE 3HOYE 4A3CE 2E2IE 3GTOE 2YU9E 5M5XE 2R92E 1R9TE 4A3IE 3HOZE 5M3FE 1SFOE 4A3FE 4BY1E 4BY7E 2WB1H 3FKIE 1TWGE 2WAQH 4C2ME 2VUME 1TWFE 4C3IE 3HOUE 5IYBE 2NVQE 3HOVE 1K83E 5C4XE 4A3DE 4Y52E 1I6HE 4A3KE 2JA5E 2NVYE 2PMZH 3K7AE 3GTLE 3S1NE 3S1QE 5FLME 3HKZH 5C44E 3PO2E 3S1ME 4A3BE 2NVTE 3S16E 2E2JE 5IYDE 5M3ME 3CQZE 4A93E 1I50E 2R7ZE 3RZOE 1DZFA 3HOWE 2JA7E 3S15E 1Y1WE 4QIWH 3HOXE 4X6AE 3M4OE 3S2DE 5C3EE 3H3VF 1Y1VE 2Y0SH 5IYCE 1TWCE 3M3YE 2B63E 3GTME 3RZDE 4A3GE 2JA6E 5IP7E 1TWHE 5M5WE 4AYBH 4Y7NE 5IP9E 3PO3E 4BXXE 2NVXE 3S1RE 3S14E 4A3EE 5C4JE 4A3ME 3GTKE
chains in the Genus database with same CATH superfamily
1TWGF 4BBRE 3I4NE 1TWAE 1IW7E 3GTQF 4A3LF 3GTGE 2R93E 5FJ8E 4C2MF 3GTJF 5BYHE 4YFXE 4BBSE 1TWFF 1EIKA 3WODE 4C3IF 3HOUF 2E2HE 3GTPE 3H0GE 3I4ME 5IYBF 2NVQF 4BBSF 3GTQE 4A3LE 3HOVF 3GTJE 1I3QF 1K83F 5C4XF 4A3DF 4C3HE 4A3JE 4KN7E 1WCME 4OIPE 3S17E 4A3CF 4ZH4E 4A3KF 2JA5F 4MEYE 2YU9F 2NVYF 2JA8E 4C3JE 1I3QE 4KMUE 3S2HE 3K7AF 3GTLF 5M5YE 3S1QF 2Y0SI 3HOYE 4A3CE 4QIWK 2E2IE 5FLMF 5C44F 4G7OE 3GTOE 2YU9E 3PO2F 5M5XE 2R92E 3S1MF 1R9TE 4A3IE 3HOZE 4MQ9E 4A3BF 3S16F 5M3FE 1SFOE 2E2JF 2O5JE 4OINE 4A3FE 4BY1E 4LK0E 2VUMF 4XLNE 4BY7E 2WB1H 4MEXE 3H3VG 2BE5E 3FKIE 1TWGE 2A6EE 4Q4ZE 5M3MF 3CQZF 2WAQH 4C2ME 4A93F 1I50F 2VUME 2R7ZF 2A69E 4Y52F 1TWFE 1SMYE 4C3IE 3HOUE 1I6HF 3HOWF 3DXJE 5IYBE 2NVQE 2JA7F 4BY7F 3S15F 3HOVE 1K83E 5C4XE 3HOXF 1Y1WF 4A3DE 3S1NF 4LK1E 5D4DE 4X6AF 4Y52E 3S2DF 5C3EF 1I6HE 4A3KE 2JA5E 1Y1VF 1I6VE 2NVYE 5E18E 2PMZH 5IYCF 1TWCF 3K7AE 2B63F 4G7HE 3GTLE 3S1NE 2NVTF 3GTMF 3S1QE 5FLME 3RZDF 3HKZH 5C44E 1ZYRE 1HQME 4A3GF 3FKIF 3PO2E 2JA6F 5IP7F 1TWHF 2CW0E 5M5WF 3S1ME 4A3BE 4Y7NF 5IPLE 2NVTE 4AYBK 3S16E 4YG2E 5IP9F 2PPBE 2E2JE 3EQLE 1QKLA 3PO3F 5IYDE 3RZOF 2NVXF 4BXXF 3S14F 5IYDF 5C4JF 4A3EF 4A3MF 4XLPE 3GTKF 4BBRF 4G7ZE 1TWAF 3I4NF 5M3ME 4OIRE 3CQZE 2WB1I 3GTGF 2R93F 5FJ8F 4A93E 1I50E 3M4OF 2R7ZE 3RZOE 1YNJK 1DZFA 3HOWE 4JK1E 4YFNE 2E2HF 3H0GF 3GTPF 3I4MF 2JA7E 4KN4E 5TMCE 3S15E 1Y1WE 4QIWH 5D4CE 3HOXE 2O5IE 3M3YF 4X6AE 3M4OE 2A68E 2WAQK 3S2DE 1WCMF 4C3HF 4A3JF 5C3EE 3S17F 3H3VF 1Y1VE 4YFKE 2A6HE 2Y0SH 2JA8F 5IYCE 1TWCE 4C3JF 3M3YE 2B63E 3S2HF 3GTME 5M5YF 3RZDE 5TMFE 3HOYF 2E2IF 4A3GE 4XSZE 3GTOF 5M5XF 2R92F 2JA6E 5IP7E 1TWHE 4OIQE 4GZYE 5M5WE 4AYBH 4A3IF 3S1RF 4Y7NE 1R9TF 3HOZF 1YNNK 2PMZK 5IP9E 4XSXE 5M3FF 2KRXA 1SFOF 3HKZK 4A3FF 4BY1F 4OIOE 4Q5SE 5E17E 3PO3E 4LJZE 4BXXE 2NVXE 3S1RE 3S14E 4A3EE 5C4JE 4A3ME 4LLGE 5D4EE 3GTKE
chains in the Genus database with same CATH topology
4BBRE 3I4NE 1TWAE 3GTGE 2R93E 5FJ8E 4BBSE 1EIKA 2E2HE 3GTPE 3H0GE 3I4ME 3GTQE 4A3LE 3GTJE 4C3HE 4A3JE 1WCME 3S17E 2JA8E 4C3JE 1I3QE 3S2HE 5M5YE 3HOYE 4A3CE 2E2IE 3GTOE 2YU9E 5M5XE 2R92E 1R9TE 4A3IE 3HOZE 5M3FE 1SFOE 4A3FE 4BY1E 4BY7E 2WB1H 3FKIE 1TWGE 2WAQH 4C2ME 2VUME 1TWFE 4C3IE 3HOUE 5IYBE 2NVQE 3HOVE 1K83E 5C4XE 4A3DE 4Y52E 1I6HE 4A3KE 2JA5E 2NVYE 2PMZH 3K7AE 3GTLE 3S1NE 3S1QE 5FLME 3HKZH 5C44E 3PO2E 3S1ME 4A3BE 2NVTE 3S16E 2E2JE 5IYDE 5M3ME 3CQZE 4A93E 1I50E 2R7ZE 3RZOE 1DZFA 3HOWE 2JA7E 3S15E 1Y1WE 4QIWH 3HOXE 4X6AE 3M4OE 3S2DE 5C3EE 3H3VF 1Y1VE 2Y0SH 5IYCE 1TWCE 3M3YE 2B63E 3GTME 3RZDE 4A3GE 2JA6E 5IP7E 1TWHE 5M5WE 4AYBH 4Y7NE 5IP9E 3PO3E 4BXXE 2NVXE 3S1RE 3S14E 4A3EE 5C4JE 4A3ME 3GTKE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BBR E;  3I4N E;  1TWA E;  3GTG E;  2R93 E;  5FJ8 E;  4BBS E;  1EIK A;  2E2H E;  3GTP E;  3H0G E;  3I4M E;  3GTQ E;  4A3L E;  3GTJ E;  4C3H E;  4A3J E;  1WCM E;  3S17 E;  2JA8 E;  4C3J E;  1I3Q E;  3S2H E;  5M5Y E;  3HOY E;  4A3C E;  2E2I E;  3GTO E;  2YU9 E;  5M5X E;  2R92 E;  1R9T E;  4A3I E;  3HOZ E;  5M3F E;  1SFO E;  4A3F E;  4BY1 E;  4BY7 E;  2WB1 H;  3FKI E;  1TWG E;  2WAQ H;  4C2M E;  2VUM E;  1TWF E;  4C3I E;  3HOU E;  5IYB E;  2NVQ E;  3HOV E;  1K83 E;  5C4X E;  4A3D E;  4Y52 E;  1I6H E;  4A3K E;  2JA5 E;  2NVY E;  2PMZ H;  3K7A E;  3GTL E;  3S1N E;  3S1Q E;  5FLM E;  3HKZ H;  5C44 E;  3PO2 E;  3S1M E;  4A3B E;  2NVT E;  3S16 E;  2E2J E;  5IYD E;  5M3M E;  3CQZ E;  4A93 E;  1I50 E;  2R7Z E;  3RZO E;  1DZF A;  3HOW E;  2JA7 E;  3S15 E;  1Y1W E;  4QIW H;  3HOX E;  4X6A E;  3M4O E;  3S2D E;  5C3E E;  3H3V F;  1Y1V E;  2Y0S H;  5IYC E;  1TWC E;  3M3Y E;  2B63 E;  3GTM E;  3RZD E;  4A3G E;  2JA6 E;  5IP7 E;  1TWH E;  5M5W E;  4AYB H;  4Y7N E;  5IP9 E;  3PO3 E;  4BXX E;  2NVX E;  3S1R E;  3S14 E;  4A3E E;  5C4J E;  4A3M E;  3GTK E; 
#chains in the Genus database with same CATH topology
 1TWG F;  4BBR E;  3I4N E;  1TWA E;  1IW7 E;  3GTQ F;  4A3L F;  3GTG E;  2R93 E;  5FJ8 E;  4C2M F;  3GTJ F;  5BYH E;  4YFX E;  4BBS E;  1TWF F;  1EIK A;  3WOD E;  4C3I F;  3HOU F;  2E2H E;  3GTP E;  3H0G E;  3I4M E;  5IYB F;  2NVQ F;  4BBS F;  3GTQ E;  4A3L E;  3HOV F;  3GTJ E;  1I3Q F;  1K83 F;  5C4X F;  4A3D F;  4C3H E;  4A3J E;  4KN7 E;  1WCM E;  4OIP E;  3S17 E;  4A3C F;  4ZH4 E;  4A3K F;  2JA5 F;  4MEY E;  2YU9 F;  2NVY F;  2JA8 E;  4C3J E;  1I3Q E;  4KMU E;  3S2H E;  3K7A F;  3GTL F;  5M5Y E;  3S1Q F;  2Y0S I;  3HOY E;  4A3C E;  4QIW K;  2E2I E;  5FLM F;  5C44 F;  4G7O E;  3GTO E;  2YU9 E;  3PO2 F;  5M5X E;  2R92 E;  3S1M F;  1R9T E;  4A3I E;  3HOZ E;  4MQ9 E;  4A3B F;  3S16 F;  5M3F E;  1SFO E;  2E2J F;  2O5J E;  4OIN E;  4A3F E;  4BY1 E;  4LK0 E;  2VUM F;  4XLN E;  4BY7 E;  2WB1 H;  4MEX E;  3H3V G;  2BE5 E;  3FKI E;  1TWG E;  2A6E E;  4Q4Z E;  5M3M F;  3CQZ F;  2WAQ H;  4C2M E;  4A93 F;  1I50 F;  2VUM E;  2R7Z F;  2A69 E;  4Y52 F;  1TWF E;  1SMY E;  4C3I E;  3HOU E;  1I6H F;  3HOW F;  3DXJ E;  5IYB E;  2NVQ E;  2JA7 F;  4BY7 F;  3S15 F;  3HOV E;  1K83 E;  5C4X E;  3HOX F;  1Y1W F;  4A3D E;  3S1N F;  4LK1 E;  5D4D E;  4X6A F;  4Y52 E;  3S2D F;  5C3E F;  1I6H E;  4A3K E;  2JA5 E;  1Y1V F;  1I6V E;  2NVY E;  5E18 E;  2PMZ H;  5IYC F;  1TWC F;  3K7A E;  2B63 F;  4G7H E;  3GTL E;  3S1N E;  2NVT F;  3GTM F;  3S1Q E;  5FLM E;  3RZD F;  3HKZ H;  5C44 E;  1ZYR E;  1HQM E;  4A3G F;  3FKI F;  3PO2 E;  2JA6 F;  5IP7 F;  1TWH F;  2CW0 E;  5M5W F;  3S1M E;  4A3B E;  4Y7N F;  5IPL E;  2NVT E;  4AYB K;  3S16 E;  4YG2 E;  5IP9 F;  2PPB E;  2E2J E;  3EQL E;  1QKL A;  3PO3 F;  5IYD E;  3RZO F;  2NVX F;  4BXX F;  3S14 F;  5IYD F;  5C4J F;  4A3E F;  4A3M F;  4XLP E;  3GTK F;  4BBR F;  4G7Z E;  1TWA F;  3I4N F;  5M3M E;  4OIR E;  3CQZ E;  2WB1 I;  3GTG F;  2R93 F;  5FJ8 F;  4A93 E;  1I50 E;  3M4O F;  2R7Z E;  3RZO E;  1YNJ K;  1DZF A;  3HOW E;  4JK1 E;  4YFN E;  2E2H F;  3H0G F;  3GTP F;  3I4M F;  2JA7 E;  4KN4 E;  5TMC E;  3S15 E;  1Y1W E;  4QIW H;  5D4C E;  3HOX E;  2O5I E;  3M3Y F;  4X6A E;  3M4O E;  2A68 E;  2WAQ K;  3S2D E;  1WCM F;  4C3H F;  4A3J F;  5C3E E;  3S17 F;  3H3V F;  1Y1V E;  4YFK E;  2A6H E;  2Y0S H;  2JA8 F;  5IYC E;  1TWC E;  4C3J F;  3M3Y E;  2B63 E;  3S2H F;  3GTM E;  5M5Y F;  3RZD E;  5TMF E;  3HOY F;  2E2I F;  4A3G E;  4XSZ E;  3GTO F;  5M5X F;  2R92 F;  2JA6 E;  5IP7 E;  1TWH E;  4OIQ E;  4GZY E;  5M5W E;  4AYB H;  4A3I F;  3S1R F;  4Y7N E;  1R9T F;  3HOZ F;  1YNN K;  2PMZ K;  5IP9 E;  4XSX E;  5M3F F;  2KRX A;  1SFO F;  3HKZ K;  4A3F F;  4BY1 F;  4OIO E;  4Q5S E;  5E17 E;  3PO3 E;  4LJZ E;  4BXX E;  2NVX E;  3S1R E;  3S14 E;  4A3E E;  5C4J E;  4A3M E;  4LLG E;  5D4E E;  3GTK E; 
#chains in the Genus database with same CATH homology
 4BBR E;  3I4N E;  1TWA E;  3GTG E;  2R93 E;  5FJ8 E;  4BBS E;  1EIK A;  2E2H E;  3GTP E;  3H0G E;  3I4M E;  3GTQ E;  4A3L E;  3GTJ E;  4C3H E;  4A3J E;  1WCM E;  3S17 E;  2JA8 E;  4C3J E;  1I3Q E;  3S2H E;  5M5Y E;  3HOY E;  4A3C E;  2E2I E;  3GTO E;  2YU9 E;  5M5X E;  2R92 E;  1R9T E;  4A3I E;  3HOZ E;  5M3F E;  1SFO E;  4A3F E;  4BY1 E;  4BY7 E;  2WB1 H;  3FKI E;  1TWG E;  2WAQ H;  4C2M E;  2VUM E;  1TWF E;  4C3I E;  3HOU E;  5IYB E;  2NVQ E;  3HOV E;  1K83 E;  5C4X E;  4A3D E;  4Y52 E;  1I6H E;  4A3K E;  2JA5 E;  2NVY E;  2PMZ H;  3K7A E;  3GTL E;  3S1N E;  3S1Q E;  5FLM E;  3HKZ H;  5C44 E;  3PO2 E;  3S1M E;  4A3B E;  2NVT E;  3S16 E;  2E2J E;  5IYD E;  5M3M E;  3CQZ E;  4A93 E;  1I50 E;  2R7Z E;  3RZO E;  1DZF A;  3HOW E;  2JA7 E;  3S15 E;  1Y1W E;  4QIW H;  3HOX E;  4X6A E;  3M4O E;  3S2D E;  5C3E E;  3H3V F;  1Y1V E;  2Y0S H;  5IYC E;  1TWC E;  3M3Y E;  2B63 E;  3GTM E;  3RZD E;  4A3G E;  2JA6 E;  5IP7 E;  1TWH E;  5M5W E;  4AYB H;  4Y7N E;  5IP9 E;  3PO3 E;  4BXX E;  2NVX E;  3S1R E;  3S14 E;  4A3E E;  5C4J E;  4A3M E;  3GTK E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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