5M5XL

Rna polymerase i elongation complex 1
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
43
structure length
43
Chain Sequence
KYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase I subunit RPA190
publication title Molecular Structures of Transcribing RNA Polymerase I.
pubmed doi rcsb
molecule tags Transcription
total genus 1
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2016-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5m5xL00
2E2HL 3H0GL 4A3KL 3GTOL 5M5XL 5IP7L 3S15L 3RZOL 3M4OL 2VUML 3S2HL 2PMZP 3GTGL 3S14L 4A3DL 4A3CL 4A3IL 4BBSL 3HOUL 3S1NL 2WB1P 4X6AL 3GTJL 3S17L 4C3IL 4BY1L 1TWAL 5IYBL 3HOWL 1TWGL 2B63L 1WCML 5C4JL 3HOXL 5C3EL 3S1ML 4BY7L 3FKIL 5IYDL 3HKZP 4BBRL 2NVQL 3GTLL 1K83L 3H3VM 2JA7L 2NVYL 5FJ8L 3HOVL 3S16L 5C44L 2NVXL 1Y1VL 4A3FL 3HOYL 1TWFL 3RZDL 4C3JL 2JA5L 1I6HL 5C4XL 1Y1WL 4A3BL 3HOZL 4AYBP 4A3ML 2R93L 2WAQP 2Y0SP 4BXXL 4Y52L 1TWCL 2E2JL 2JA8L 2E2IL 1SFOL 3PO2L 4A93L 5M3FL 4C2M1 3GTPL 3GTQL 3GTML 2R92L 3PO3L 4Y7NL 3I4ML 1I50L 4QIWP 2JA6L 3S1QL 3S1RL 1R9TL 5M3ML 3I4NL 1TWHL 4A3GL 3CQZL 3GTKL 3K7AL 5IYCL 5M5WL 2NVTL 2YU9L 5IP9L 3S2DL 1I3QL 5M5YL 4C3HL 4A3JL 2R7ZL 5FLML 4A3LL 4A3EL 3M3YL
chains in the Genus database with same CATH superfamily
2E2HL 1IROA 2XJSA 4ZN3B 1JYBA 1B2OA 4AI1A 5IP7L 1P7PA 1CADA 3M4OL 3GTGL 4A3DL 1IU5A 4A3IL 3HJWB 5GAGc 4JAFA 2M4VA 1TWGL 4TPUA 2H12A 3NFPI 3HOXL 1B13A 1BQ8A 2PVXA 1S2ZA 2A6HD 1ODHA 5IYDL 3FDJA 3WWLA 1H7VA 1K83L 3H3VM 2LCQA 2AQCA 2JA7L 4AI0A 1Y1VL 1LKMA 1PFYA 2KKDA 4C3JL 2PSMC 5C4XL 1YUZA 1Y1WL 3PZAA 3B0AB 4BXXL 4Y52L 2A6ED 3LWOB 5M3FL 1RDVA 2XJRA 3PO3L 2XJQA 2V0FA 4Y7NL 1YK5A 1PZXA 1R9TL 1IU6A 2ERSA 4A3GL 3GTKL 2CKAA 5M5WL 3LWVB 1FHMA 3J7Y1 3PL5A 1B2JA 1VZIA 1NXGA 5M5YL 4A3JL 2V0EA 2RDVA 4A3KL 1BE7A 3MSUA 1SMUA 2PVEA 3PIP1 3LWRB 5EIOC 2PMZP 2BE5D 4BBSL 1S24A 3H97A 2CR8A 4X6AL 5AN9H 8RXNA 2PPTA 1PFWA 5IYBL 3LWPB 2XJTA 5MLC3 5C4JL 5C3EL 3S1ML 1CAAA 2ERJA 3QVDA 1NXEA 3LPEB 2DSXA 4ZN1B 4TVMA 3LNLA 2NVYL 3HOVL 3S16L 3KYYA 4AI2A 2NVXL 4A3FL 3H9BA 3HOYL 3P8BA 4AHWA 1R0HA 4WFN1 4A3ML 4AI3A 2WAQP 2Y0SP 1TWCL 5GAHc 2JA8L 2E2IL 3RYGA 3PO2L 4C2M1 5DM61 4ME3A 2V3BB 2R92L 1QQTA 2JA6L 1YUXA 4G6BA 1RYQA 3I4NL 1OWBA 1QCVA 4POFA 3IU3I 3MQKB 2M6PA 1Z92B 4AR4A 3HJYB 4JADA 2YU9L 3S2DL 5GADc 2JI2A 4XXBB 3HAXC 2R7ZL 4A3EL 1LTLA 5M5XL 3S2HL 2RFKB 1WJVA 3HOUL 1R0JA 1DVBA 3GTJL 3ZG6A 1TWAL 3HOWL 4LHNA 2B5ID 1T9QA 4UY81 4BY7L 5K2ME 1FHHA 2NYDA 2APOB 1QYBA 1IW7D 4AHYA 2XJUA 2L0ZA 2Z3RB 3GTLL 5EINC 5MFPA 5GAEc 3MPSA 5C44L 1VZGA 3KYXA 1YK4A 3RZDL 1SMWA 2JA5L 2ZIXA 1I6HL 3VPBE 5AI3A 1SMMA 3J7Z1 1BFYA 3K35A 4AYBP 1BQ9A 2E2JL 1SFOL 1R0IA 4YWMA 3GTML 2C6AA 5JVG1 4YWLA 1RWDA 3I4ML 1I50L 2CKCA 3S1RL 3PWFA 1PFUA 1BRFA 1TWHL 2JI1A 2KN9A 4XGHA 1C09A 1LKOA 3K7AL 3KYVA 4E6YA 5IY0A 3KYUA 2XJPA 1ZRPA 2O5JD 4AHXA 4C3HL 2Z3QB 1T9OA 4JAGA 3M3YL 3H99A 3H0GL 1B71A 3LWQB 4V196 3GTOL 2M6OA 4LHLA 1R0FA 4B8CD 3S15L 3RZOL 2VUML 4U671 4GS7D 3S14L 5AI2A 4A3CL 3P2AA 2HR5A 3S1NL 2WB1P 2QL0A 3S17L 4C3IL 2VL6A 1VCXA 4BY1L 3PKIA 4AHZA 2B63L 5MGNA 1PFVA 1WCML 1IRNA 1VZHA 2J9UB 3FKIL 2AUSB 3HKZP 4BBRL 3B08B 5RXNA 3PIO1 2NVQL 1RDGA 2JI3A 2K2DA 2HVYC 5MFZA 5FJ8L 1RB9A 4AR6A 1OWCA 2GMGA 4RXNA 1S30A 1TWFL 3A44A 5H1Sc 1LKPA 3KYWA 3SS2A 4A3BL 4JAEA 2EY4E 3HOZL 3H9CA 2R93L 4POGA 1E8JA 4A93L 7RXNA 3GTPL 2A69D 3GTQL 4AR3A 4K9FA 2M4YA 1R0GA 4QIWP 3JR7A 3S1QL 5JVH1 3QQCE 2XJVA 2MS3A 2PYAA 2A68D 5M3ML 4AR5A 6RXNA 2AYJA 3CQZL 1RYTA 5IYCL 3WWNB 1YV1A 1NNQA 2NVTL 3RZ6A 1F4LA 5IP9L 1I3QL 3PKJA 5DM71 1T9PA 3RZTA 1DX8A 5MF6A 5FLML 4A3LL 2C6BA
chains in the Genus database with same CATH topology
2E2HL 3H0GL 4A3KL 3GTOL 5M5XL 5IP7L 3S15L 3RZOL 3M4OL 2VUML 3S2HL 2PMZP 3GTGL 3S14L 4A3DL 4A3CL 4A3IL 4BBSL 3HOUL 3S1NL 2WB1P 4X6AL 3GTJL 3S17L 4C3IL 4BY1L 1TWAL 5IYBL 3HOWL 1TWGL 2B63L 1WCML 5C4JL 3HOXL 5C3EL 3S1ML 4BY7L 3FKIL 5IYDL 3HKZP 4BBRL 2NVQL 3GTLL 1K83L 3H3VM 2JA7L 2NVYL 5FJ8L 3HOVL 3S16L 5C44L 2NVXL 1Y1VL 4A3FL 3HOYL 1TWFL 3RZDL 4C3JL 2JA5L 1I6HL 5C4XL 1Y1WL 4A3BL 3HOZL 4AYBP 4A3ML 2R93L 2WAQP 2Y0SP 4BXXL 4Y52L 1TWCL 2E2JL 2JA8L 2E2IL 1SFOL 3PO2L 4A93L 5M3FL 4C2M1 3GTPL 3GTQL 3GTML 2R92L 3PO3L 4Y7NL 3I4ML 1I50L 4QIWP 2JA6L 3S1QL 3S1RL 1R9TL 5M3ML 3I4NL 1TWHL 4A3GL 3CQZL 3GTKL 3K7AL 5IYCL 5M5WL 2NVTL 2YU9L 5IP9L 3S2DL 1I3QL 5M5YL 4C3HL 4A3JL 2R7ZL 5FLML 4A3LL 4A3EL 3M3YL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E2H L;  3H0G L;  4A3K L;  3GTO L;  5M5X L;  5IP7 L;  3S15 L;  3RZO L;  3M4O L;  2VUM L;  3S2H L;  2PMZ P;  3GTG L;  3S14 L;  4A3D L;  4A3C L;  4A3I L;  4BBS L;  3HOU L;  3S1N L;  2WB1 P;  4X6A L;  3GTJ L;  3S17 L;  4C3I L;  4BY1 L;  1TWA L;  5IYB L;  3HOW L;  1TWG L;  2B63 L;  1WCM L;  5C4J L;  3HOX L;  5C3E L;  3S1M L;  4BY7 L;  3FKI L;  5IYD L;  3HKZ P;  4BBR L;  2NVQ L;  3GTL L;  1K83 L;  3H3V M;  2JA7 L;  2NVY L;  5FJ8 L;  3HOV L;  3S16 L;  5C44 L;  2NVX L;  1Y1V L;  4A3F L;  3HOY L;  1TWF L;  3RZD L;  4C3J L;  2JA5 L;  1I6H L;  5C4X L;  1Y1W L;  4A3B L;  3HOZ L;  4AYB P;  4A3M L;  2R93 L;  2WAQ P;  2Y0S P;  4BXX L;  4Y52 L;  1TWC L;  2E2J L;  2JA8 L;  2E2I L;  1SFO L;  3PO2 L;  4A93 L;  5M3F L;  4C2M 1;  3GTP L;  3GTQ L;  3GTM L;  2R92 L;  3PO3 L;  4Y7N L;  3I4M L;  1I50 L;  4QIW P;  2JA6 L;  3S1Q L;  3S1R L;  1R9T L;  5M3M L;  3I4N L;  1TWH L;  4A3G L;  3CQZ L;  3GTK L;  3K7A L;  5IYC L;  5M5W L;  2NVT L;  2YU9 L;  5IP9 L;  3S2D L;  1I3Q L;  5M5Y L;  4C3H L;  4A3J L;  2R7Z L;  5FLM L;  4A3L L;  4A3E L;  3M3Y L; 
#chains in the Genus database with same CATH topology
 2E2H L;  1IRO A;  2XJS A;  4ZN3 B;  1JYB A;  1B2O A;  4AI1 A;  5IP7 L;  1P7P A;  1CAD A;  3M4O L;  3GTG L;  4A3D L;  1IU5 A;  4A3I L;  3HJW B;  5GAG c;  4JAF A;  2M4V A;  1TWG L;  4TPU A;  2H12 A;  3NFP I;  3HOX L;  1B13 A;  1BQ8 A;  2PVX A;  1S2Z A;  2A6H D;  1ODH A;  5IYD L;  3FDJ A;  3WWL A;  1H7V A;  1K83 L;  3H3V M;  2LCQ A;  2AQC A;  2JA7 L;  4AI0 A;  1Y1V L;  1LKM A;  1PFY A;  2KKD A;  4C3J L;  2PSM C;  5C4X L;  1YUZ A;  1Y1W L;  3PZA A;  3B0A B;  4BXX L;  4Y52 L;  2A6E D;  3LWO B;  5M3F L;  1RDV A;  2XJR A;  3PO3 L;  2XJQ A;  2V0F A;  4Y7N L;  1YK5 A;  1PZX A;  1R9T L;  1IU6 A;  2ERS A;  4A3G L;  3GTK L;  2CKA A;  5M5W L;  3LWV B;  1FHM A;  3J7Y 1;  3PL5 A;  1B2J A;  1VZI A;  1NXG A;  5M5Y L;  4A3J L;  2V0E A;  2RDV A;  4A3K L;  1BE7 A;  3MSU A;  1SMU A;  2PVE A;  3PIP 1;  3LWR B;  5EIO C;  2PMZ P;  2BE5 D;  4BBS L;  1S24 A;  3H97 A;  2CR8 A;  4X6A L;  5AN9 H;  8RXN A;  2PPT A;  1PFW A;  5IYB L;  3LWP B;  2XJT A;  5MLC 3;  5C4J L;  5C3E L;  3S1M L;  1CAA A;  2ERJ A;  3QVD A;  1NXE A;  3LPE B;  2DSX A;  4ZN1 B;  4TVM A;  3LNL A;  2NVY L;  3HOV L;  3S16 L;  3KYY A;  4AI2 A;  2NVX L;  4A3F L;  3H9B A;  3HOY L;  3P8B A;  4AHW A;  1R0H A;  4WFN 1;  4A3M L;  4AI3 A;  2WAQ P;  2Y0S P;  1TWC L;  5GAH c;  2JA8 L;  2E2I L;  3RYG A;  3PO2 L;  4C2M 1;  5DM6 1;  4ME3 A;  2V3B B;  2R92 L;  1QQT A;  2JA6 L;  1YUX A;  4G6B A;  1RYQ A;  3I4N L;  1OWB A;  1QCV A;  4POF A;  3IU3 I;  3MQK B;  2M6P A;  1Z92 B;  4AR4 A;  3HJY B;  4JAD A;  2YU9 L;  3S2D L;  5GAD c;  2JI2 A;  4XXB B;  3HAX C;  2R7Z L;  4A3E L;  1LTL A;  5M5X L;  3S2H L;  2RFK B;  1WJV A;  3HOU L;  1R0J A;  1DVB A;  3GTJ L;  3ZG6 A;  1TWA L;  3HOW L;  4LHN A;  2B5I D;  1T9Q A;  4UY8 1;  4BY7 L;  5K2M E;  1FHH A;  2NYD A;  2APO B;  1QYB A;  1IW7 D;  4AHY A;  2XJU A;  2L0Z A;  2Z3R B;  3GTL L;  5EIN C;  5MFP A;  5GAE c;  3MPS A;  5C44 L;  1VZG A;  3KYX A;  1YK4 A;  3RZD L;  1SMW A;  2JA5 L;  2ZIX A;  1I6H L;  3VPB E;  5AI3 A;  1SMM A;  3J7Z 1;  1BFY A;  3K35 A;  4AYB P;  1BQ9 A;  2E2J L;  1SFO L;  1R0I A;  4YWM A;  3GTM L;  2C6A A;  5JVG 1;  4YWL A;  1RWD A;  3I4M L;  1I50 L;  2CKC A;  3S1R L;  3PWF A;  1PFU A;  1BRF A;  1TWH L;  2JI1 A;  2KN9 A;  4XGH A;  1C09 A;  1LKO A;  3K7A L;  3KYV A;  4E6Y A;  5IY0 A;  3KYU A;  2XJP A;  1ZRP A;  2O5J D;  4AHX A;  4C3H L;  2Z3Q B;  1T9O A;  4JAG A;  3M3Y L;  3H99 A;  3H0G L;  1B71 A;  3LWQ B;  4V19 6;  3GTO L;  2M6O A;  4LHL A;  1R0F A;  4B8C D;  3S15 L;  3RZO L;  2VUM L;  4U67 1;  4GS7 D;  3S14 L;  5AI2 A;  4A3C L;  3P2A A;  2HR5 A;  3S1N L;  2WB1 P;  2QL0 A;  3S17 L;  4C3I L;  2VL6 A;  1VCX A;  4BY1 L;  3PKI A;  4AHZ A;  2B63 L;  5MGN A;  1PFV A;  1WCM L;  1IRN A;  1VZH A;  2J9U B;  3FKI L;  2AUS B;  3HKZ P;  4BBR L;  3B08 B;  5RXN A;  3PIO 1;  2NVQ L;  1RDG A;  2JI3 A;  2K2D A;  2HVY C;  5MFZ A;  5FJ8 L;  1RB9 A;  4AR6 A;  1OWC A;  2GMG A;  4RXN A;  1S30 A;  1TWF L;  3A44 A;  5H1S c;  1LKP A;  3KYW A;  3SS2 A;  4A3B L;  4JAE A;  2EY4 E;  3HOZ L;  3H9C A;  2R93 L;  4POG A;  1E8J A;  4A93 L;  7RXN A;  3GTP L;  2A69 D;  3GTQ L;  4AR3 A;  4K9F A;  2M4Y A;  1R0G A;  4QIW P;  3JR7 A;  3S1Q L;  5JVH 1;  3QQC E;  2XJV A;  2MS3 A;  2PYA A;  2A68 D;  5M3M L;  4AR5 A;  6RXN A;  2AYJ A;  3CQZ L;  1RYT A;  5IYC L;  3WWN B;  1YV1 A;  1NNQ A;  2NVT L;  3RZ6 A;  1F4L A;  5IP9 L;  1I3Q L;  3PKJ A;  5DM7 1;  1T9P A;  3RZT A;  1DX8 A;  5MF6 A;  5FLM L;  4A3L L;  2C6B A; 
#chains in the Genus database with same CATH homology
 2E2H L;  3H0G L;  4A3K L;  3GTO L;  5M5X L;  5IP7 L;  3S15 L;  3RZO L;  3M4O L;  2VUM L;  3S2H L;  2PMZ P;  3GTG L;  3S14 L;  4A3D L;  4A3C L;  4A3I L;  4BBS L;  3HOU L;  3S1N L;  2WB1 P;  4X6A L;  3GTJ L;  3S17 L;  4C3I L;  4BY1 L;  1TWA L;  5IYB L;  3HOW L;  1TWG L;  2B63 L;  1WCM L;  5C4J L;  3HOX L;  5C3E L;  3S1M L;  4BY7 L;  3FKI L;  5IYD L;  3HKZ P;  4BBR L;  2NVQ L;  3GTL L;  1K83 L;  3H3V M;  2JA7 L;  2NVY L;  5FJ8 L;  3HOV L;  3S16 L;  5C44 L;  2NVX L;  1Y1V L;  4A3F L;  3HOY L;  1TWF L;  3RZD L;  4C3J L;  2JA5 L;  1I6H L;  5C4X L;  1Y1W L;  4A3B L;  3HOZ L;  4AYB P;  4A3M L;  2R93 L;  2WAQ P;  2Y0S P;  4BXX L;  4Y52 L;  1TWC L;  2E2J L;  2JA8 L;  2E2I L;  1SFO L;  3PO2 L;  4A93 L;  5M3F L;  4C2M 1;  3GTP L;  3GTQ L;  3GTM L;  2R92 L;  3PO3 L;  4Y7N L;  3I4M L;  1I50 L;  4QIW P;  2JA6 L;  3S1Q L;  3S1R L;  1R9T L;  5M3M L;  3I4N L;  1TWH L;  4A3G L;  3CQZ L;  3GTK L;  3K7A L;  5IYC L;  5M5W L;  2NVT L;  2YU9 L;  5IP9 L;  3S2D L;  1I3Q L;  5M5Y L;  4C3H L;  4A3J L;  2R7Z L;  5FLM L;  4A3L L;  4A3E L;  3M3Y L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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