5MLCO

Cryo-em structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
135
structure length
135
Chain Sequence
MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIISG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA, chloroplastic
publication title Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions.
pubmed doi rcsb
total genus 20
structure length 135
sequence length 135
ec nomenclature
pdb deposition date 2016-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 5mlcO01
4U67J 1QVGH 3CXCH 5JVHJ 5GADN 1KC8J 2OTJH 2OTLH 3CCVH 3CCSH 1W2BH 2QEXH 3CCJH 1WKIA 1VQ8H 1VQPH 1VQOH 1VQMH 1QVFH 1YJNH 3PIOJ 3CMEH 3J7ZM 3CCLH 5JVGJ 1VQ6H 3CMAH 1Q82J 1Q86J 3CCRH 3OW2H 3CC4H 4UY8M 1YI2H 4IOAJ 2PA2A 2QA4H 3CC2H 4WFAJ 1VQ9H 1YITH 5DM7J 1Q7YJ 3CC7H 1S72H 1K9MJ 3CF5J 3CCQH 5GAHN 5AN9F 2ZJRJ 4WF9J 1KD1J 3CD6H 3PIPJ 1Y69K 1N8RJ 1M1KJ 1K73J 1JJ2H 3CCUH 4WCEJ 5HL7J 4WFNJ 3G71H 1YJWH 3G4SH 1VQ5H 1VQ4H 5H1SO 5MLCO 2ZJQJ 2ZJPJ 1VQNH 3CCEH 3CPWH 3I55H 1M90J 1YJ9H 3DLLJ 1VQLH 1K8AJ 1VQKH 5GAGN 1VQ7H 4IO9J 5DM6J 1NJIJ 1YIJH 3CCMH 4WFBJ 1Q81J 3G6EH 1YHQH 3I56H 5GAEN 1KQSH 4IOCJ
chains in the Genus database with same CATH superfamily
4U67J 5HULA 1NVIE 1QVGH 1SIJA 3CXCH 1V97A 1VLBA 1JROB 3ETRC 5JVHJ 2WK6A 1JRPB 5GADN 4YYYA 1KC8J 1BRWA 2OTJH 2W54B 5AYXA 2OTLH 3NVZC 1FMAE 1N61B 1N60B 3CCSH 3CCVH 2W55B 1N62B 1YTKA 1FIQC 3PAJA 2QEXH 1W2BH 2E3TA 3CCJH 1WKIA 1VQ8H 1FFUB 1VQPH 1VQOH 3RPFA 1VQMH 3FAHA 1QVFH 1YJNH 3PIOJ 2TPTA 2I14A 2B7NA 3CMEH 5EY3A 3J7ZM 2B7QA 3WNZA 1OTPA 3NVVC 5HUOA 1N5WB 3C2EA 3CCLH 1N5XA 1FO4A 3NS1C 5JVGJ 4US8A 1VQ6H 3CMAH 1Q82J 1Q86J 4EAFA 3CCRH 3OW2H 1ZXIB 3CC4H 4UY8M 1YTDA 5HUPA 1YI2H 1NVJA 1WYGA 3TQVA 4IOAJ 2PA2A 2QA4H 3CC2H 2WP4A 2QIEA 4WFAJ 1VQ9H 1YITH 4KWVA 3GNNA 4XR5A 4YEKA 5MPOC 4KWWA 5DM7J 1X1OA 1Q7YJ 3L4PA 4ZOHA 3AM9A 3SR6C 3CC7H 1S72H 4GA4A 1QPQA 1K9MJ 1QAPA 3CF5J 3C2RA 3CCQH 5GAHN 3WO0A 4C7YA 1QPRA 4I9AA 5AYYA 5AN9F 1DGJA 3NVYC 2ZJRJ 2WK5A 4WF9J 1VDVA 2I1OA 1KD1J 3CD6H 3EUB4 3PIPJ 4AP8A 1Y69K 1FFVB 1N8RJ 1N63B 1M1KJ 3WO1A 1K73J 2Q5WE 1JJ2H 3CCUH 4WCEJ 5HL7J 4WFNJ 3AN1A 2W3SB 4USAA 2OMDA 3G71H 1YJWH 5EP8A 3G4SH 1VQ5H 1VQ4H 4EADA 5H1SO 5MLCO 3AMZA 2ZJQJ 1YTEA 2ZJPJ 1VQNH 4GA5A 1O4UA 3CCEH 3CPWH 3C2OA 1QPNA 3B9JC 3I55H 1M90J 4X46A 5AYZA 3NRZC 1FM0E 1AZYA 1QPOA 3VMMA 1YJ9H 3DLLJ 1VQLH 1K8AJ 2W3RB 1VQKH 3H5QA 5GAGN 1VQ7H 4IO9J 3NVWC 1SB3A 5DM6J 1NJIJ 1RM6A 1YIJH 3CCMH 1UOUA 2DSJA 4WFBJ 1Q81J 3C2VA 2J0FA 2JBMA 3C2FA 4GA6A 4US9A 3BIIE 4C80A 3G6EH 3L0GA 1YHQH 3I56H 5GAEN 2B7PA 3FC4A 1KQSH 4C7ZA 4LHMA 4IOCJ
chains in the Genus database with same CATH topology
4U67J 1QVGH 3CXCH 5JVHJ 5GADN 1KC8J 2OTJH 2OTLH 3CCVH 3CCSH 1W2BH 2QEXH 3CCJH 1WKIA 1VQ8H 1VQPH 1VQOH 1VQMH 1QVFH 1YJNH 3PIOJ 3CMEH 3J7ZM 3CCLH 5JVGJ 1VQ6H 3CMAH 1Q82J 1Q86J 3CCRH 3OW2H 3CC4H 4UY8M 1YI2H 4IOAJ 2PA2A 2QA4H 3CC2H 4WFAJ 1VQ9H 1YITH 5DM7J 1Q7YJ 3CC7H 1S72H 1K9MJ 3CF5J 3CCQH 5GAHN 5AN9F 2ZJRJ 4WF9J 1KD1J 3CD6H 3PIPJ 1Y69K 1N8RJ 1M1KJ 1K73J 1JJ2H 3CCUH 4WCEJ 5HL7J 4WFNJ 3G71H 1YJWH 3G4SH 1VQ5H 1VQ4H 5H1SO 5MLCO 2ZJQJ 2ZJPJ 1VQNH 3CCEH 3CPWH 3I55H 1M90J 1YJ9H 3DLLJ 1VQLH 1K8AJ 1VQKH 5GAGN 1VQ7H 4IO9J 5DM6J 1NJIJ 1YIJH 3CCMH 4WFBJ 1Q81J 3G6EH 1YHQH 3I56H 5GAEN 1KQSH 4IOCJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U67 J;  1QVG H;  3CXC H;  5JVH J;  5GAD N;  1KC8 J;  2OTJ H;  2OTL H;  3CCV H;  3CCS H;  1W2B H;  2QEX H;  3CCJ H;  1WKI A;  1VQ8 H;  1VQP H;  1VQO H;  1VQM H;  1QVF H;  1YJN H;  3PIO J;  3CME H;  3J7Z M;  3CCL H;  5JVG J;  1VQ6 H;  3CMA H;  1Q82 J;  1Q86 J;  3CCR H;  3OW2 H;  3CC4 H;  4UY8 M;  1YI2 H;  4IOA J;  2PA2 A;  2QA4 H;  3CC2 H;  4WFA J;  1VQ9 H;  1YIT H;  5DM7 J;  1Q7Y J;  3CC7 H;  1S72 H;  1K9M J;  3CF5 J;  3CCQ H;  5GAH N;  5AN9 F;  2ZJR J;  4WF9 J;  1KD1 J;  3CD6 H;  3PIP J;  1Y69 K;  1N8R J;  1M1K J;  1K73 J;  1JJ2 H;  3CCU H;  4WCE J;  5HL7 J;  4WFN J;  3G71 H;  1YJW H;  3G4S H;  1VQ5 H;  1VQ4 H;  5H1S O;  5MLC O;  2ZJQ J;  2ZJP J;  1VQN H;  3CCE H;  3CPW H;  3I55 H;  1M90 J;  1YJ9 H;  3DLL J;  1VQL H;  1K8A J;  1VQK H;  5GAG N;  1VQ7 H;  4IO9 J;  5DM6 J;  1NJI J;  1YIJ H;  3CCM H;  4WFB J;  1Q81 J;  3G6E H;  1YHQ H;  3I56 H;  5GAE N;  1KQS H;  4IOC J; 
#chains in the Genus database with same CATH topology
 4U67 J;  5HUL A;  1NVI E;  1QVG H;  1SIJ A;  3CXC H;  1V97 A;  1VLB A;  1JRO B;  3ETR C;  5JVH J;  2WK6 A;  1JRP B;  5GAD N;  4YYY A;  1KC8 J;  1BRW A;  2OTJ H;  2W54 B;  5AYX A;  2OTL H;  3NVZ C;  1FMA E;  1N61 B;  1N60 B;  3CCS H;  3CCV H;  2W55 B;  1N62 B;  1YTK A;  1FIQ C;  3PAJ A;  2QEX H;  1W2B H;  2E3T A;  3CCJ H;  1WKI A;  1VQ8 H;  1FFU B;  1VQP H;  1VQO H;  3RPF A;  1VQM H;  3FAH A;  1QVF H;  1YJN H;  3PIO J;  2TPT A;  2I14 A;  2B7N A;  3CME H;  5EY3 A;  3J7Z M;  2B7Q A;  3WNZ A;  1OTP A;  3NVV C;  5HUO A;  1N5W B;  3C2E A;  3CCL H;  1N5X A;  1FO4 A;  3NS1 C;  5JVG J;  4US8 A;  1VQ6 H;  3CMA H;  1Q82 J;  1Q86 J;  4EAF A;  3CCR H;  3OW2 H;  1ZXI B;  3CC4 H;  4UY8 M;  1YTD A;  5HUP A;  1YI2 H;  1NVJ A;  1WYG A;  3TQV A;  4IOA J;  2PA2 A;  2QA4 H;  3CC2 H;  2WP4 A;  2QIE A;  4WFA J;  1VQ9 H;  1YIT H;  4KWV A;  3GNN A;  4XR5 A;  4YEK A;  5MPO C;  4KWW A;  5DM7 J;  1X1O A;  1Q7Y J;  3L4P A;  4ZOH A;  3AM9 A;  3SR6 C;  3CC7 H;  1S72 H;  4GA4 A;  1QPQ A;  1K9M J;  1QAP A;  3CF5 J;  3C2R A;  3CCQ H;  5GAH N;  3WO0 A;  4C7Y A;  1QPR A;  4I9A A;  5AYY A;  5AN9 F;  1DGJ A;  3NVY C;  2ZJR J;  2WK5 A;  4WF9 J;  1VDV A;  2I1O A;  1KD1 J;  3CD6 H;  3EUB 4;  3PIP J;  4AP8 A;  1Y69 K;  1FFV B;  1N8R J;  1N63 B;  1M1K J;  3WO1 A;  1K73 J;  2Q5W E;  1JJ2 H;  3CCU H;  4WCE J;  5HL7 J;  4WFN J;  3AN1 A;  2W3S B;  4USA A;  2OMD A;  3G71 H;  1YJW H;  5EP8 A;  3G4S H;  1VQ5 H;  1VQ4 H;  4EAD A;  5H1S O;  5MLC O;  3AMZ A;  2ZJQ J;  1YTE A;  2ZJP J;  1VQN H;  4GA5 A;  1O4U A;  3CCE H;  3CPW H;  3C2O A;  1QPN A;  3B9J C;  3I55 H;  1M90 J;  4X46 A;  5AYZ A;  3NRZ C;  1FM0 E;  1AZY A;  1QPO A;  3VMM A;  1YJ9 H;  3DLL J;  1VQL H;  1K8A J;  2W3R B;  1VQK H;  3H5Q A;  5GAG N;  1VQ7 H;  4IO9 J;  3NVW C;  1SB3 A;  5DM6 J;  1NJI J;  1RM6 A;  1YIJ H;  3CCM H;  1UOU A;  2DSJ A;  4WFB J;  1Q81 J;  3C2V A;  2J0F A;  2JBM A;  3C2F A;  4GA6 A;  4US9 A;  3BII E;  4C80 A;  3G6E H;  3L0G A;  1YHQ H;  3I56 H;  5GAE N;  2B7P A;  3FC4 A;  1KQS H;  4C7Z A;  4LHM A;  4IOC J; 
#chains in the Genus database with same CATH homology
 4U67 J;  1QVG H;  3CXC H;  5JVH J;  5GAD N;  1KC8 J;  2OTJ H;  2OTL H;  3CCV H;  3CCS H;  1W2B H;  2QEX H;  3CCJ H;  1WKI A;  1VQ8 H;  1VQP H;  1VQO H;  1VQM H;  1QVF H;  1YJN H;  3PIO J;  3CME H;  3J7Z M;  3CCL H;  5JVG J;  1VQ6 H;  3CMA H;  1Q82 J;  1Q86 J;  3CCR H;  3OW2 H;  3CC4 H;  4UY8 M;  1YI2 H;  4IOA J;  2PA2 A;  2QA4 H;  3CC2 H;  4WFA J;  1VQ9 H;  1YIT H;  5DM7 J;  1Q7Y J;  3CC7 H;  1S72 H;  1K9M J;  3CF5 J;  3CCQ H;  5GAH N;  5AN9 F;  2ZJR J;  4WF9 J;  1KD1 J;  3CD6 H;  3PIP J;  1Y69 K;  1N8R J;  1M1K J;  1K73 J;  1JJ2 H;  3CCU H;  4WCE J;  5HL7 J;  4WFN J;  3G71 H;  1YJW H;  3G4S H;  1VQ5 H;  1VQ4 H;  5H1S O;  5MLC O;  2ZJQ J;  2ZJP J;  1VQN H;  3CCE H;  3CPW H;  3I55 H;  1M90 J;  1YJ9 H;  3DLL J;  1VQL H;  1K8A J;  1VQK H;  5GAG N;  1VQ7 H;  4IO9 J;  5DM6 J;  1NJI J;  1YIJ H;  3CCM H;  4WFB J;  1Q81 J;  3G6E H;  1YHQ H;  3I56 H;  5GAE N;  1KQS H;  4IOC J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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