5PRNA

E1m, y96w, s119w mutant of rh. blastica porin
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTWDSEMGYEASSFGDAQSSFFAYNWKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Rhodobacter blasticus
publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
total genus 75
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5prnA00
2O4VA 1BH3A 5DL8A 2OMFA 1GFPA 3VZWX 3UU2A 3T24A 3POXA 3HWBA 1PRNA 5DL6A 1HXXA 4D5UA 1OSMA 2FGQX 2J1NA 2ZFGA 2Y2XA 1HXTA 1GFNA 4BUMX 4JFBA 3WI4A 2PORA 4LSHA 3VY8X 3POQA 2XE2A 2XG6A 4FSPA 4KR4A 4FOZA 1H6S1 8PRNA 3A2SX 4KR8A 1GFMA 3NSGA 3HW9A 2FGRA 3FYXA 1BT9A 7PRNA 3SY9A 1OPFA 4AUIA 4LSIA 1MPFA 4FT6A 2Y0LA 1GFOA 1GFQA 3VZUX 4D65A 3SYSA 3SYBA 4FMSA 1HXUA 4KRAA 2K4TA 3VZTX 2ODJA 2Y0HA 2XE3A 2Y0KA 5DL5A 5JDPA 3PORA 5PRNA 4RJXA 4FRXA 2XE1A 4D64A 2J4UP 2ZLDA 3SY7A 3T20A 1PHOA 2XE5A 3EMNX 4GCSA 3T0SA 6PRNA 4FSOA 4C69X 3UPGA 5DL7A 4GCQA 3SZDA 4LSEA 4RJWA 4LSFA 3POUA 4FRTA 3O0EA 3WI5A 3SZVA 4GCPA 3JTYA 3K19A 1E54A 3PRNA 2QTKA 5FVNA 3VY9X 2PRNA
chains in the Genus database with same CATH superfamily
3HOLA 3BS0A 4AYEC 2O4VA 1BH3A 2XTRA 2JQYA 2R4LA 2OMFA 4G76A 5DL8A 1GFPA 3VZWX 3UU2A 3T24A 3POXA 3HWBA 4N74A 5E79O 3LK2B 4E1TA 3AA0A 1PRNA 3A0HO 3AAEB 3DA3A 4PR7A 4F4BA 4RLCA 5DL6A 4AYID 1BXWA 4O49A 1HXXA 4D5UA 1OSMA 2FGQX 2J1NA 2WJRA 5ADXK 2ZFGA 4PJ0O 2LFUA 2Y2XA 1HXTA 1GFNA 2WVPA 4BUMX 2R88A 3C5OA 2MNHA 3LK3A 2F1TA 2GE4A 3QRAA 4FZMA 4JFBA 3UAQA 3LK2A 3V8UA 3WI4A 4K3CA 2PORA 3HOEA 4LSHA 3AAEA 3AA0B 3VY8X 3POQA 2M07A 2N2LA 2X9KA 2XE2A 5EE2A 3VE1A 4AKMA 2XG6A 4FSPA 2YNKA 4KR4A 4FESA 1H6S1 1ZHWA 4FOZA 2XMXA 8PRNA 3A2SX 4KR8A 1GFMA 4O4XA 3G7GA 3NSGA 3LK3B 1YS5A 4FZNA 4RL9A 1ZHXA 3HW9A 3GP6A 4O4UA 3AAAB 5G39A 1MM5A 2KDYA 2FGRA 3FYXA 1BT9A 7PRNA 3SY9A 4XNLA 1OPFA 2F1CX 3AA6B 4AUIA 3A0BO 4O3YA 3PGUA 3JCUO 4LSIA 1MPFA 4FT6A 2Y0LA 1QJ8A 2KZ7A 1IZNB 5G38A 1GFOA 3PQSA 4O3XB 1GFQA 3VZUX 4IL6O 4CTDA 5D5DA 4O3WA 4N58A 4UB6O 3AAAA 4D65A 4QQ1A 3SYSA 3SYBA 4FMSA 1HXUA 3RBHA 5T5FA 4KRAA 2K4TA 3VZTX 2ODJA 5B66O 4AKRA 2AXTO 4GHBA 3AA6A 4U9CA 1T1LA 4XNKA 2R4OA 5KAFO 3BRYA 3DZMA 5KAIO 3DWOX 5TISO 3TZGA 3LK42 5H2FO 2Y0HA 4UB8O 2LHFA 1IZNA 2JMMA 2XE3A 2Y0KA 2KZ7B 4AYDC 3PF1A 5DL5A 5ADXL 5JDPA 3PORA 5PRNA 5AFUK 1G90A 3AA1B 4O3ZA 4RJXA 4FRXA 1ZHZA 2XE1A 5IYUA 1QJ9A 4FQEA 5AFUL 4K3BA 1T16A 4D64A 4AKRB 2J4UP 4AYMC 2ZLDA 2R8AA 3NJTA 5GV0A 2R4PA 3SY7A 3AA7A 5GTIO 4G75A 1PHOA 4N59A 5GTHO 3T20A 1Q9FA 4C4VA 2XE5A 4RLBA 3KZIO 3EMNX 1ZHYA 4FZLA 1ORMA 4GCSA 3T0SA 4B61A 1THQA 3AA1A 3DWNA 3WU2O 4AZLA 2X27X 1QJPA 2F1VA 6PRNA 4FSOA 2KC0A 4C69X 2MHLA 2IWVA 3LK41 3UPGA 2W80C 3PGRA 2XTQA 3BRZA 5DL7A 4FUVA 4AYNA 4PUXA 3AA7B 4GCQA 2IWWA 2KXPB 3SZDA 4LSEA 2W81C 2Y7SA 2R4NA 3KVDD 4JCHA 4C4VB 4GF4A 1Q9GA 4RJWA 4N75A 5B5EO 2ERVA 5G26A 4LSFA 3POUA 1ZHTA 4FRTA 3O0EA 4C00A 2K0LA 3WI5A 3SZVA 2WJQA 1MM4A 3PQUA 3JTYA 4GCPA 3VE2A 4E1SA 3PGSA 3K19A 5G3AA 3QRCA 1E54A 3DA4A 2R89A 3PRNA 2QTKA 2KXPA 5FVNA 1S5LO 1P4TA 2YPVA 4AFKA 3VY9X 2M06A 4Z3TA 2N2MA 2PRNA
chains in the Genus database with same CATH topology
3HOLA 4AYEC 2O4VA 1BH3A 2XTRA 4G76A 2OMFA 5DL8A 1GFPA 3VZWX 3UU2A 3T24A 3POXA 3HWBA 3LK2B 4E1TA 3AA0A 1PRNA 3AAEB 3DA3A 4F4BA 4RLCA 5DL6A 4AYID 1BXWA 4O49A 1HXXA 4D5UA 1OSMA 2FGQX 2J1NA 5ADXK 2ZFGA 2LFUA 2Y2XA 1HXTA 1GFNA 4BUMX 5ADXL 3C5OA 2MNHA 3LK3A 2F1TA 2GE4A 3QRAA 4FZMA 4JFBA 3UAQA 3LK2A 3V8UA 3WI4A 2PORA 3HOEA 4LSHA 3AAEA 3AA0B 3VY8X 3POQA 2M07A 2N2LA 2XE2A 5EE2A 3VE1A 4AKMA 2XG6A 4FSPA 2YNKA 4KR4A 4FESA 1H6S1 1ZHWA 4FOZA 2XMXA 8PRNA 3A2SX 4KR8A 1GFMA 4O4XA 3G7GA 3NSGA 3LK3B 1YS5A 4FZNA 4RL9A 1ZHXA 3HW9A 3GP6A 4O4UA 3AAAB 1MM5A 2KDYA 2FGRA 3FYXA 1BT9A 7PRNA 3SY9A 4XNLA 1OPFA 3AA6B 4AUIA 4O3YA 4LSIA 1MPFA 4FT6A 2Y0LA 1QJ8A 2KZ7A 1IZNB 1GFOA 3PQSA 4O3XB 1GFQA 3VZUX 5D5DA 4O3WA 4N58A 4D65A 3AAAA 4QQ1A 3SYSA 3SYBA 4FMSA 1HXUA 3RBHA 5T5FA 4KRAA 2K4TA 3VZTX 2ODJA 4AKRA 4GHBA 3AA6A 4U9CA 4XNKA 3TZGA 3LK42 2Y0HA 2LHFA 1IZNA 2JMMA 2XE3A 2Y0KA 2KZ7B 4AYDC 5DL5A 5JDPA 3PORA 5PRNA 5AFUK 1G90A 3AA1B 4O3ZA 4RJXA 4FRXA 1ZHZA 2XE1A 5IYUA 1QJ9A 5AFUL 4D64A 4AKRB 2J4UP 4AYMC 2ZLDA 5GV0A 3SY7A 3AA7A 4G75A 1PHOA 4N59A 3T20A 1Q9FA 2XE5A 4RLBA 3EMNX 1ZHYA 4FZLA 1ORMA 4GCSA 3T0SA 4B61A 1THQA 3AA1A 4AZLA 2X27X 1QJPA 2F1VA 6PRNA 4FSOA 2KC0A 4C69X 2MHLA 3LK41 3UPGA 2W80C 2XTQA 5DL7A 4FUVA 4AYNA 4PUXA 3AA7B 4GCQA 2KXPB 3SZDA 4LSEA 2W81C 2Y7SA 3KVDD 4JCHA 4GF4A 1Q9GA 4RJWA 2ERVA 5G26A 4LSFA 3POUA 1ZHTA 4FRTA 3O0EA 2K0LA 3WI5A 3SZVA 4GCPA 1MM4A 3PQUA 3JTYA 4E1SA 3VE2A 3K19A 3QRCA 1E54A 3DA4A 3PRNA 2QTKA 2KXPA 5FVNA 1P4TA 2YPVA 4AFKA 3VY9X 2M06A 4Z3TA 2N2MA 2PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O4V A;  1BH3 A;  5DL8 A;  2OMF A;  1GFP A;  3VZW X;  3UU2 A;  3T24 A;  3POX A;  3HWB A;  1PRN A;  5DL6 A;  1HXX A;  4D5U A;  1OSM A;  2FGQ X;  2J1N A;  2ZFG A;  2Y2X A;  1HXT A;  1GFN A;  4BUM X;  4JFB A;  3WI4 A;  2POR A;  4LSH A;  3VY8 X;  3POQ A;  2XE2 A;  2XG6 A;  4FSP A;  4KR4 A;  4FOZ A;  1H6S 1;  8PRN A;  3A2S X;  4KR8 A;  1GFM A;  3NSG A;  3HW9 A;  2FGR A;  3FYX A;  1BT9 A;  7PRN A;  3SY9 A;  1OPF A;  4AUI A;  4LSI A;  1MPF A;  4FT6 A;  2Y0L A;  1GFO A;  1GFQ A;  3VZU X;  4D65 A;  3SYS A;  3SYB A;  4FMS A;  1HXU A;  4KRA A;  2K4T A;  3VZT X;  2ODJ A;  2Y0H A;  2XE3 A;  2Y0K A;  5DL5 A;  5JDP A;  3POR A;  5PRN A;  4RJX A;  4FRX A;  2XE1 A;  4D64 A;  2J4U P;  2ZLD A;  3SY7 A;  3T20 A;  1PHO A;  2XE5 A;  3EMN X;  4GCS A;  3T0S A;  6PRN A;  4FSO A;  4C69 X;  3UPG A;  5DL7 A;  4GCQ A;  3SZD A;  4LSE A;  4RJW A;  4LSF A;  3POU A;  4FRT A;  3O0E A;  3WI5 A;  3SZV A;  4GCP A;  3JTY A;  3K19 A;  1E54 A;  3PRN A;  2QTK A;  5FVN A;  3VY9 X;  2PRN A; 
#chains in the Genus database with same CATH topology
 3HOL A;  3BS0 A;  4AYE C;  2O4V A;  1BH3 A;  2XTR A;  2JQY A;  2R4L A;  2OMF A;  4G76 A;  5DL8 A;  1GFP A;  3VZW X;  3UU2 A;  3T24 A;  3POX A;  3HWB A;  4N74 A;  5E79 O;  3LK2 B;  4E1T A;  3AA0 A;  1PRN A;  3A0H O;  3AAE B;  3DA3 A;  4PR7 A;  4F4B A;  4RLC A;  5DL6 A;  4AYI D;  1BXW A;  4O49 A;  1HXX A;  4D5U A;  1OSM A;  2FGQ X;  2J1N A;  2WJR A;  5ADX K;  2ZFG A;  4PJ0 O;  2LFU A;  2Y2X A;  1HXT A;  1GFN A;  2WVP A;  4BUM X;  2R88 A;  3C5O A;  2MNH A;  3LK3 A;  2F1T A;  2GE4 A;  3QRA A;  4FZM A;  4JFB A;  3UAQ A;  3LK2 A;  3V8U A;  3WI4 A;  4K3C A;  2POR A;  3HOE A;  4LSH A;  3AAE A;  3AA0 B;  3VY8 X;  3POQ A;  2M07 A;  2N2L A;  2X9K A;  2XE2 A;  5EE2 A;  3VE1 A;  4AKM A;  2XG6 A;  4FSP A;  2YNK A;  4KR4 A;  4FES A;  1H6S 1;  1ZHW A;  4FOZ A;  2XMX A;  8PRN A;  3A2S X;  4KR8 A;  1GFM A;  4O4X A;  3G7G A;  3NSG A;  3LK3 B;  1YS5 A;  4FZN A;  4RL9 A;  1ZHX A;  3HW9 A;  3GP6 A;  4O4U A;  3AAA B;  5G39 A;  1MM5 A;  2KDY A;  2FGR A;  3FYX A;  1BT9 A;  7PRN A;  3SY9 A;  4XNL A;  1OPF A;  2F1C X;  3AA6 B;  4AUI A;  3A0B O;  4O3Y A;  3PGU A;  3JCU O;  4LSI A;  1MPF A;  4FT6 A;  2Y0L A;  1QJ8 A;  2KZ7 A;  1IZN B;  5G38 A;  1GFO A;  3PQS A;  4O3X B;  1GFQ A;  3VZU X;  4IL6 O;  4CTD A;  5D5D A;  4O3W A;  4N58 A;  4UB6 O;  3AAA A;  4D65 A;  4QQ1 A;  3SYS A;  3SYB A;  4FMS A;  1HXU A;  3RBH A;  5T5F A;  4KRA A;  2K4T A;  3VZT X;  2ODJ A;  5B66 O;  4AKR A;  2AXT O;  4GHB A;  3AA6 A;  4U9C A;  1T1L A;  4XNK A;  2R4O A;  5KAF O;  3BRY A;  3DZM A;  5KAI O;  3DWO X;  5TIS O;  3TZG A;  3LK4 2;  5H2F O;  2Y0H A;  4UB8 O;  2LHF A;  1IZN A;  2JMM A;  2XE3 A;  2Y0K A;  2KZ7 B;  4AYD C;  3PF1 A;  5DL5 A;  5ADX L;  5JDP A;  3POR A;  5PRN A;  5AFU K;  1G90 A;  3AA1 B;  4O3Z A;  4RJX A;  4FRX A;  1ZHZ A;  2XE1 A;  5IYU A;  1QJ9 A;  4FQE A;  5AFU L;  4K3B A;  1T16 A;  4D64 A;  4AKR B;  2J4U P;  4AYM C;  2ZLD A;  2R8A A;  3NJT A;  5GV0 A;  2R4P A;  3SY7 A;  3AA7 A;  5GTI O;  4G75 A;  1PHO A;  4N59 A;  5GTH O;  3T20 A;  1Q9F A;  4C4V A;  2XE5 A;  4RLB A;  3KZI O;  3EMN X;  1ZHY A;  4FZL A;  1ORM A;  4GCS A;  3T0S A;  4B61 A;  1THQ A;  3AA1 A;  3DWN A;  3WU2 O;  4AZL A;  2X27 X;  1QJP A;  2F1V A;  6PRN A;  4FSO A;  2KC0 A;  4C69 X;  2MHL A;  2IWV A;  3LK4 1;  3UPG A;  2W80 C;  3PGR A;  2XTQ A;  3BRZ A;  5DL7 A;  4FUV A;  4AYN A;  4PUX A;  3AA7 B;  4GCQ A;  2IWW A;  2KXP B;  3SZD A;  4LSE A;  2W81 C;  2Y7S A;  2R4N A;  3KVD D;  4JCH A;  4C4V B;  4GF4 A;  1Q9G A;  4RJW A;  4N75 A;  5B5E O;  2ERV A;  5G26 A;  4LSF A;  3POU A;  1ZHT A;  4FRT A;  3O0E A;  4C00 A;  2K0L A;  3WI5 A;  3SZV A;  2WJQ A;  1MM4 A;  3PQU A;  3JTY A;  4GCP A;  3VE2 A;  4E1S A;  3PGS A;  3K19 A;  5G3A A;  3QRC A;  1E54 A;  3DA4 A;  2R89 A;  3PRN A;  2QTK A;  2KXP A;  5FVN A;  1S5L O;  1P4T A;  2YPV A;  4AFK A;  3VY9 X;  2M06 A;  4Z3T A;  2N2M A;  2PRN A; 
#chains in the Genus database with same CATH homology
 3HOL A;  4AYE C;  2O4V A;  1BH3 A;  2XTR A;  4G76 A;  2OMF A;  5DL8 A;  1GFP A;  3VZW X;  3UU2 A;  3T24 A;  3POX A;  3HWB A;  3LK2 B;  4E1T A;  3AA0 A;  1PRN A;  3AAE B;  3DA3 A;  4F4B A;  4RLC A;  5DL6 A;  4AYI D;  1BXW A;  4O49 A;  1HXX A;  4D5U A;  1OSM A;  2FGQ X;  2J1N A;  5ADX K;  2ZFG A;  2LFU A;  2Y2X A;  1HXT A;  1GFN A;  4BUM X;  5ADX L;  3C5O A;  2MNH A;  3LK3 A;  2F1T A;  2GE4 A;  3QRA A;  4FZM A;  4JFB A;  3UAQ A;  3LK2 A;  3V8U A;  3WI4 A;  2POR A;  3HOE A;  4LSH A;  3AAE A;  3AA0 B;  3VY8 X;  3POQ A;  2M07 A;  2N2L A;  2XE2 A;  5EE2 A;  3VE1 A;  4AKM A;  2XG6 A;  4FSP A;  2YNK A;  4KR4 A;  4FES A;  1H6S 1;  1ZHW A;  4FOZ A;  2XMX A;  8PRN A;  3A2S X;  4KR8 A;  1GFM A;  4O4X A;  3G7G A;  3NSG A;  3LK3 B;  1YS5 A;  4FZN A;  4RL9 A;  1ZHX A;  3HW9 A;  3GP6 A;  4O4U A;  3AAA B;  1MM5 A;  2KDY A;  2FGR A;  3FYX A;  1BT9 A;  7PRN A;  3SY9 A;  4XNL A;  1OPF A;  3AA6 B;  4AUI A;  4O3Y A;  4LSI A;  1MPF A;  4FT6 A;  2Y0L A;  1QJ8 A;  2KZ7 A;  1IZN B;  1GFO A;  3PQS A;  4O3X B;  1GFQ A;  3VZU X;  5D5D A;  4O3W A;  4N58 A;  4D65 A;  3AAA A;  4QQ1 A;  3SYS A;  3SYB A;  4FMS A;  1HXU A;  3RBH A;  5T5F A;  4KRA A;  2K4T A;  3VZT X;  2ODJ A;  4AKR A;  4GHB A;  3AA6 A;  4U9C A;  4XNK A;  3TZG A;  3LK4 2;  2Y0H A;  2LHF A;  1IZN A;  2JMM A;  2XE3 A;  2Y0K A;  2KZ7 B;  4AYD C;  5DL5 A;  5JDP A;  3POR A;  5PRN A;  5AFU K;  1G90 A;  3AA1 B;  4O3Z A;  4RJX A;  4FRX A;  1ZHZ A;  2XE1 A;  5IYU A;  1QJ9 A;  5AFU L;  4D64 A;  4AKR B;  2J4U P;  4AYM C;  2ZLD A;  5GV0 A;  3SY7 A;  3AA7 A;  4G75 A;  1PHO A;  4N59 A;  3T20 A;  1Q9F A;  2XE5 A;  4RLB A;  3EMN X;  1ZHY A;  4FZL A;  1ORM A;  4GCS A;  3T0S A;  4B61 A;  1THQ A;  3AA1 A;  4AZL A;  2X27 X;  1QJP A;  2F1V A;  6PRN A;  4FSO A;  2KC0 A;  4C69 X;  2MHL A;  3LK4 1;  3UPG A;  2W80 C;  2XTQ A;  5DL7 A;  4FUV A;  4AYN A;  4PUX A;  3AA7 B;  4GCQ A;  2KXP B;  3SZD A;  4LSE A;  2W81 C;  2Y7S A;  3KVD D;  4JCH A;  4GF4 A;  1Q9G A;  4RJW A;  2ERV A;  5G26 A;  4LSF A;  3POU A;  1ZHT A;  4FRT A;  3O0E A;  2K0L A;  3WI5 A;  3SZV A;  4GCP A;  1MM4 A;  3PQU A;  3JTY A;  4E1S A;  3VE2 A;  3K19 A;  3QRC A;  1E54 A;  3DA4 A;  3PRN A;  2QTK A;  2KXP A;  5FVN A;  1P4T A;  2YPV A;  4AFK A;  3VY9 X;  2M06 A;  4Z3T A;  2N2M A;  2PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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