5PRNA

E1m, y96w, s119w mutant of rh. blastica porin
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTWDSEMGYEASSFGDAQSSFFAYNWKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords PORIN
publication title Porin mutants with new channel properties.
pubmed rcsb
source organism Rhodobacter blasticus
total genus 75
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5prnA00
4KRAA 3SZDA 4RJWA 3VY9X 3UU2A 3VY8X 3HW9A 3POUA 4GCQA 2Y2XA 2OMFA 2ZLDA 3NSGA 4FOZA 5DL6A 2FGRA 2XE2A 3WI4A 2PRNA 4LSEA 3VZWX 1E54A 5FVNA 2Y0HA 3T0SA 1GFOA 3FYXA 1OSMA 3WI5A 3POXA 4FSPA 5DL5A 4GCPA 4D5UA 4FRTA 3VZTX 3UPGA 1BH3A 2XG6A 3T20A 2QTKA 5DL8A 4LSHA 4D65A 3SYBA 2J1NA 2XE3A 6PRNA 2FGQX 4LSFA 2PORA 4JFBA 5DL7A 1HXUA 3A2SX 2ODJA 3SY9A 4BUMX 1HXXA 1PRNA 2Y0KA 4FMSA 2XE1A 4LSIA 4FSOA 5PRNA 5JDPA 7PRNA 2ZFGA 3JTYA 1BT9A 3HWBA 2O4VA 4FRXA 4C69X 3T24A 4AUIA 4KR8A 1H6S1 4RJXA 3EMNX 3PORA 3POQA 2K4TA 3O0EA 2J4UP 4GCSA 3SY7A 2Y0LA 3SZVA 1GFNA 1OPFA 2XE5A 3K19A 3VZUX 1HXTA 3SYSA 1GFPA 1PHOA 1MPFA 1GFMA 3PRNA 4KR4A 8PRNA 4D64A 1GFQA 4FT6A
chains in the Genus database with same CATH superfamily
4KRAA 3SZDA 4RJWA 4FQEA 2X27X 3VY9X 3UU2A 1ZHWA 1P4TA 2R4LA 3HW9A 3VY8X 2LHFA 3POUA 3WU2O 4AYID 3UPGA 4GCQA 2Y2XA 2OMFA 2ZLDA 3JCUO 3NSGA 3AAEB 3C5OA 4FOZA 4FZLA 4RLCA 5DL6A 2FGRA 2XE2A 3WI4A 3A0HO 3DWNA 1MM5A 2MNHA 2PRNA 3BRYA 3DZMA 2Y7SA 3BS0A 5G26A 4LSEA 1QJ8A 3VZWX 4F4BA 1E54A 5GV0A 3AA0A 2IWVA 5B66O 5FVNA 2N2MA 4AYMC 4AYEC 4UB8O 4U9CA 2Y0HA 3T0SA 2JQYA 1GFOA 2R89A 5AFUK 3FYXA 4O3YA 1OSMA 4C00A 4AYNA 3WI5A 3POXA 4XNLA 2MHLA 4FSPA 3KVDD 4K3BA 5G3AA 5DL5A 4GCPA 4D5UA 5B5EO 4FRTA 2KXPA 2F1TA 3LK2A 1BH3A 2XG6A 4N58A 3VZTX 2QTKA 3T20A 2W80C 3AA0B 5DL8A 2LFUA 4LSHA 3LK3A 3LK41 4RL9A 4D65A 3AA1A 4G75A 4XNKA 3SYBA 2J1NA 3PQSA 4FT6A 2KDYA 4E1TA 1ZHYA 2XE3A 4JCHA 5G38A 3AAAA 6PRNA 1IZNA 1THQA 5ADXK 4E1SA 4AKMA 4FZNA 2KXPB 3PF1A 1MM4A 2XTRA 4N75A 4O3XB 4N59A 1S5LO 2FGQX 1T1LA 3PGUA 4LSFA 2GE4A 2PORA 4JFBA 3LK3B 4UB6O 4Z3TA 5DL7A 3AA1B 3AA7A 1HXUA 5TISO 5KAFO 2ODJA 3A2SX 3NJTA 3BRZA 1HXXA 3SY9A 4BUMX 4FESA 4CTDA 4PR7A 3DWOX 5GTHO 1PRNA 3AAAB 3TZGA 1IZNB 2Y0KA 3PGRA 4FMSA 5IYUA 2XE1A 4O3WA 4LSIA 4FSOA 4FZMA 5G39A 5PRNA 5JDPA 2KZ7A 7PRNA 3VE1A 4AKRA 3DA3A 3RBHA 2F1CX 2ZFGA 3JTYA 1BT9A 3HWBA 3PQUA 2O4VA 2N2LA 4FRXA 4O49A 5D5DA 5EE2A 2IWWA 3AA7B 4O4UA 3PGSA 4C69X 3T24A 4AUIA 4KR8A 4PJ0O 1H6S1 2R4NA 2R8AA 2XTQA 4RLBA 5AFUL 2R4OA 2WJRA 1ZHTA 2F1VA 4RJXA 2M07A 2WVPA 3AA6A 3EMNX 3LK2B 3PORA 3HOLA 3POQA 1Q9FA 2K4TA 2KZ7B 2K0LA 3UAQA 4AKRB 3O0EA 4FUVA 3DA4A 4PUXA 5KAIO 1ZHZA 2J4UP 5T5FA 4N74A 1ZHXA 4GCSA 4O3ZA 3SY7A 4QQ1A 4O4XA 2JMMA 2Y0LA 4AYDC 4AZLA 3SZVA 2R4PA 5GTIO 1G90A 2ERVA 4G76A 1GFNA 1T16A 3A0BO 3LK42 1QJPA 2X9KA 3QRCA 3V8UA 1BXWA 3AA6B 1OPFA 2XE5A 3K19A 3VZUX 1HXTA 3GP6A 5ADXL 4C4VA 3SYSA 4GHBA 1GFPA 3G7GA 5E79O 1PHOA 1MPFA 4AFKA 2W81C 1GFMA 2R88A 1QJ9A 3PRNA 5H2FO 1YS5A 3HOEA 2YPVA 2XMXA 4GF4A 2KC0A 4KR4A 4IL6O 4B61A 3AAEA 3VE2A 8PRNA 2AXTO 2WJQA 1GFQA 4D64A 4K3CA 2YNKA 1ORMA 4C4VB 2M06A 1Q9GA 3KZIO 3QRAA
chains in the Genus database with same CATH topology
4KRAA 3SZDA 4RJWA 2X27X 3VY9X 3UU2A 1ZHWA 1P4TA 3HW9A 3VY8X 2LHFA 3POUA 4AYID 3UPGA 4GCQA 2Y2XA 2OMFA 2ZLDA 3NSGA 4FOZA 3AAEB 3C5OA 4FZLA 4RLCA 5DL6A 4F4BA 2FGRA 2XE2A 3WI4A 1MM5A 2MNHA 2PRNA 2Y7SA 5G26A 4LSEA 1QJ8A 3VZWX 5GV0A 1E54A 3AA0A 5FVNA 2N2MA 4AYEC 4U9CA 2Y0HA 3T0SA 1GFOA 5AFUK 3FYXA 4O3YA 1OSMA 4AYNA 3WI5A 3POXA 4XNLA 2MHLA 4FSPA 3KVDD 5DL5A 4GCPA 4D5UA 4FRTA 2KXPA 2F1TA 3LK2A 1BH3A 2XG6A 4N58A 3VZTX 2QTKA 3T20A 2W80C 3AA0B 5DL8A 2LFUA 4LSHA 3LK3A 3LK41 4RL9A 4D65A 3AA1A 4G75A 4XNKA 3SYBA 2J1NA 3PQSA 4FT6A 2KDYA 4E1TA 1ZHYA 2XE3A 4JCHA 3AAAA 6PRNA 1IZNA 1THQA 5ADXK 4E1SA 4AKMA 4FZNA 2KXPB 1MM4A 2XTRA 4O3XB 4AYMC 4N59A 2FGQX 4LSFA 2GE4A 2PORA 4JFBA 3LK3B 4Z3TA 5DL7A 3AA1B 3AA7A 1HXUA 2ODJA 3A2SX 3SY9A 4BUMX 1HXXA 4FESA 1PRNA 3AAAB 3TZGA 1IZNB 2Y0KA 4FMSA 5IYUA 2XE1A 4O3WA 4LSIA 4FSOA 4FZMA 5PRNA 5JDPA 2KZ7A 7PRNA 3VE1A 4AKRA 3DA3A 3RBHA 2ZFGA 3JTYA 3PQUA 1BT9A 3HWBA 2O4VA 2N2LA 4FRXA 4O49A 5D5DA 5EE2A 3AA7B 4O4UA 4C69X 3T24A 4AUIA 4KR8A 1H6S1 2XTQA 5AFUL 1ZHTA 2F1VA 4RJXA 2M07A 3EMNX 3AA6A 3LK2B 3PORA 3POQA 3HOLA 4RLBA 1Q9FA 2K4TA 2KZ7B 2K0LA 3UAQA 4AKRB 3O0EA 4FUVA 3DA4A 4PUXA 1ZHZA 2J4UP 5T5FA 1ZHXA 4GCSA 4O3ZA 3SY7A 4QQ1A 4O4XA 2JMMA 2Y0LA 4AYDC 4AZLA 3SZVA 1G90A 2ERVA 4G76A 1GFNA 3LK42 3QRCA 1QJPA 3V8UA 1BXWA 3AA6B 1OPFA 2XE5A 3K19A 3VZUX 1HXTA 3GP6A 5ADXL 3SYSA 4GHBA 1GFPA 3G7GA 1PHOA 1MPFA 4AFKA 2W81C 1GFMA 1QJ9A 3PRNA 1YS5A 3HOEA 2YPVA 2XMXA 4GF4A 2KC0A 4KR4A 4B61A 3AAEA 3VE2A 8PRNA 4D64A 1GFQA 2YNKA 1ORMA 2M06A 1Q9GA 3QRAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KRA A;  3SZD A;  4RJW A;  3VY9 X;  3UU2 A;  3VY8 X;  3HW9 A;  3POU A;  4GCQ A;  2Y2X A;  2OMF A;  2ZLD A;  3NSG A;  4FOZ A;  5DL6 A;  2FGR A;  2XE2 A;  3WI4 A;  2PRN A;  4LSE A;  3VZW X;  1E54 A;  5FVN A;  2Y0H A;  3T0S A;  1GFO A;  3FYX A;  1OSM A;  3WI5 A;  3POX A;  4FSP A;  5DL5 A;  4GCP A;  4D5U A;  4FRT A;  3VZT X;  3UPG A;  1BH3 A;  2XG6 A;  3T20 A;  2QTK A;  5DL8 A;  4LSH A;  4D65 A;  3SYB A;  2J1N A;  2XE3 A;  6PRN A;  2FGQ X;  4LSF A;  2POR A;  4JFB A;  5DL7 A;  1HXU A;  3A2S X;  2ODJ A;  3SY9 A;  4BUM X;  1HXX A;  1PRN A;  2Y0K A;  4FMS A;  2XE1 A;  4LSI A;  4FSO A;  5PRN A;  5JDP A;  7PRN A;  2ZFG A;  3JTY A;  1BT9 A;  3HWB A;  2O4V A;  4FRX A;  4C69 X;  3T24 A;  4AUI A;  4KR8 A;  1H6S 1;  4RJX A;  3EMN X;  3POR A;  3POQ A;  2K4T A;  3O0E A;  2J4U P;  4GCS A;  3SY7 A;  2Y0L A;  3SZV A;  1GFN A;  1OPF A;  2XE5 A;  3K19 A;  3VZU X;  1HXT A;  3SYS A;  1GFP A;  1PHO A;  1MPF A;  1GFM A;  3PRN A;  4KR4 A;  8PRN A;  4D64 A;  1GFQ A;  4FT6 A; 
#chains in the Genus database with same CATH topology
 4KRA A;  3SZD A;  4RJW A;  4FQE A;  2X27 X;  3VY9 X;  3UU2 A;  1ZHW A;  1P4T A;  2R4L A;  3HW9 A;  3VY8 X;  2LHF A;  3POU A;  3WU2 O;  4AYI D;  3UPG A;  4GCQ A;  2Y2X A;  2OMF A;  2ZLD A;  3JCU O;  3NSG A;  3AAE B;  3C5O A;  4FOZ A;  4FZL A;  4RLC A;  5DL6 A;  2FGR A;  2XE2 A;  3WI4 A;  3A0H O;  3DWN A;  1MM5 A;  2MNH A;  2PRN A;  3BRY A;  3DZM A;  2Y7S A;  3BS0 A;  5G26 A;  4LSE A;  1QJ8 A;  3VZW X;  4F4B A;  1E54 A;  5GV0 A;  3AA0 A;  2IWV A;  5B66 O;  5FVN A;  2N2M A;  4AYM C;  4AYE C;  4UB8 O;  4U9C A;  2Y0H A;  3T0S A;  2JQY A;  1GFO A;  2R89 A;  5AFU K;  3FYX A;  4O3Y A;  1OSM A;  4C00 A;  4AYN A;  3WI5 A;  3POX A;  4XNL A;  2MHL A;  4FSP A;  3KVD D;  4K3B A;  5G3A A;  5DL5 A;  4GCP A;  4D5U A;  5B5E O;  4FRT A;  2KXP A;  2F1T A;  3LK2 A;  1BH3 A;  2XG6 A;  4N58 A;  3VZT X;  2QTK A;  3T20 A;  2W80 C;  3AA0 B;  5DL8 A;  2LFU A;  4LSH A;  3LK3 A;  3LK4 1;  4RL9 A;  4D65 A;  3AA1 A;  4G75 A;  4XNK A;  3SYB A;  2J1N A;  3PQS A;  4FT6 A;  2KDY A;  4E1T A;  1ZHY A;  2XE3 A;  4JCH A;  5G38 A;  3AAA A;  6PRN A;  1IZN A;  1THQ A;  5ADX K;  4E1S A;  4AKM A;  4FZN A;  2KXP B;  3PF1 A;  1MM4 A;  2XTR A;  4N75 A;  4O3X B;  4N59 A;  1S5L O;  2FGQ X;  1T1L A;  3PGU A;  4LSF A;  2GE4 A;  2POR A;  4JFB A;  3LK3 B;  4UB6 O;  4Z3T A;  5DL7 A;  3AA1 B;  3AA7 A;  1HXU A;  5TIS O;  5KAF O;  2ODJ A;  3A2S X;  3NJT A;  3BRZ A;  1HXX A;  3SY9 A;  4BUM X;  4FES A;  4CTD A;  4PR7 A;  3DWO X;  5GTH O;  1PRN A;  3AAA B;  3TZG A;  1IZN B;  2Y0K A;  3PGR A;  4FMS A;  5IYU A;  2XE1 A;  4O3W A;  4LSI A;  4FSO A;  4FZM A;  5G39 A;  5PRN A;  5JDP A;  2KZ7 A;  7PRN A;  3VE1 A;  4AKR A;  3DA3 A;  3RBH A;  2F1C X;  2ZFG A;  3JTY A;  1BT9 A;  3HWB A;  3PQU A;  2O4V A;  2N2L A;  4FRX A;  4O49 A;  5D5D A;  5EE2 A;  2IWW A;  3AA7 B;  4O4U A;  3PGS A;  4C69 X;  3T24 A;  4AUI A;  4KR8 A;  4PJ0 O;  1H6S 1;  2R4N A;  2R8A A;  2XTQ A;  4RLB A;  5AFU L;  2R4O A;  2WJR A;  1ZHT A;  2F1V A;  4RJX A;  2M07 A;  2WVP A;  3AA6 A;  3EMN X;  3LK2 B;  3POR A;  3HOL A;  3POQ A;  1Q9F A;  2K4T A;  2KZ7 B;  2K0L A;  3UAQ A;  4AKR B;  3O0E A;  4FUV A;  3DA4 A;  4PUX A;  5KAI O;  1ZHZ A;  2J4U P;  5T5F A;  4N74 A;  1ZHX A;  4GCS A;  4O3Z A;  3SY7 A;  4QQ1 A;  4O4X A;  2JMM A;  2Y0L A;  4AYD C;  4AZL A;  3SZV A;  2R4P A;  5GTI O;  1G90 A;  2ERV A;  4G76 A;  1GFN A;  1T16 A;  3A0B O;  3LK4 2;  1QJP A;  2X9K A;  3QRC A;  3V8U A;  1BXW A;  3AA6 B;  1OPF A;  2XE5 A;  3K19 A;  3VZU X;  1HXT A;  3GP6 A;  5ADX L;  4C4V A;  3SYS A;  4GHB A;  1GFP A;  3G7G A;  5E79 O;  1PHO A;  1MPF A;  4AFK A;  2W81 C;  1GFM A;  2R88 A;  1QJ9 A;  3PRN A;  5H2F O;  1YS5 A;  3HOE A;  2YPV A;  2XMX A;  4GF4 A;  2KC0 A;  4KR4 A;  4IL6 O;  4B61 A;  3AAE A;  3VE2 A;  8PRN A;  2AXT O;  2WJQ A;  1GFQ A;  4D64 A;  4K3C A;  2YNK A;  1ORM A;  4C4V B;  2M06 A;  1Q9G A;  3KZI O;  3QRA A; 
#chains in the Genus database with same CATH homology
 4KRA A;  3SZD A;  4RJW A;  2X27 X;  3VY9 X;  3UU2 A;  1ZHW A;  1P4T A;  3HW9 A;  3VY8 X;  2LHF A;  3POU A;  4AYI D;  3UPG A;  4GCQ A;  2Y2X A;  2OMF A;  2ZLD A;  3NSG A;  4FOZ A;  3AAE B;  3C5O A;  4FZL A;  4RLC A;  5DL6 A;  4F4B A;  2FGR A;  2XE2 A;  3WI4 A;  1MM5 A;  2MNH A;  2PRN A;  2Y7S A;  5G26 A;  4LSE A;  1QJ8 A;  3VZW X;  5GV0 A;  1E54 A;  3AA0 A;  5FVN A;  2N2M A;  4AYE C;  4U9C A;  2Y0H A;  3T0S A;  1GFO A;  5AFU K;  3FYX A;  4O3Y A;  1OSM A;  4AYN A;  3WI5 A;  3POX A;  4XNL A;  2MHL A;  4FSP A;  3KVD D;  5DL5 A;  4GCP A;  4D5U A;  4FRT A;  2KXP A;  2F1T A;  3LK2 A;  1BH3 A;  2XG6 A;  4N58 A;  3VZT X;  2QTK A;  3T20 A;  2W80 C;  3AA0 B;  5DL8 A;  2LFU A;  4LSH A;  3LK3 A;  3LK4 1;  4RL9 A;  4D65 A;  3AA1 A;  4G75 A;  4XNK A;  3SYB A;  2J1N A;  3PQS A;  4FT6 A;  2KDY A;  4E1T A;  1ZHY A;  2XE3 A;  4JCH A;  3AAA A;  6PRN A;  1IZN A;  1THQ A;  5ADX K;  4E1S A;  4AKM A;  4FZN A;  2KXP B;  1MM4 A;  2XTR A;  4O3X B;  4AYM C;  4N59 A;  2FGQ X;  4LSF A;  2GE4 A;  2POR A;  4JFB A;  3LK3 B;  4Z3T A;  5DL7 A;  3AA1 B;  3AA7 A;  1HXU A;  2ODJ A;  3A2S X;  3SY9 A;  4BUM X;  1HXX A;  4FES A;  1PRN A;  3AAA B;  3TZG A;  1IZN B;  2Y0K A;  4FMS A;  5IYU A;  2XE1 A;  4O3W A;  4LSI A;  4FSO A;  4FZM A;  5PRN A;  5JDP A;  2KZ7 A;  7PRN A;  3VE1 A;  4AKR A;  3DA3 A;  3RBH A;  2ZFG A;  3JTY A;  3PQU A;  1BT9 A;  3HWB A;  2O4V A;  2N2L A;  4FRX A;  4O49 A;  5D5D A;  5EE2 A;  3AA7 B;  4O4U A;  4C69 X;  3T24 A;  4AUI A;  4KR8 A;  1H6S 1;  2XTQ A;  5AFU L;  1ZHT A;  2F1V A;  4RJX A;  2M07 A;  3EMN X;  3AA6 A;  3LK2 B;  3POR A;  3POQ A;  3HOL A;  4RLB A;  1Q9F A;  2K4T A;  2KZ7 B;  2K0L A;  3UAQ A;  4AKR B;  3O0E A;  4FUV A;  3DA4 A;  4PUX A;  1ZHZ A;  2J4U P;  5T5F A;  1ZHX A;  4GCS A;  4O3Z A;  3SY7 A;  4QQ1 A;  4O4X A;  2JMM A;  2Y0L A;  4AYD C;  4AZL A;  3SZV A;  1G90 A;  2ERV A;  4G76 A;  1GFN A;  3LK4 2;  3QRC A;  1QJP A;  3V8U A;  1BXW A;  3AA6 B;  1OPF A;  2XE5 A;  3K19 A;  3VZU X;  1HXT A;  3GP6 A;  5ADX L;  3SYS A;  4GHB A;  1GFP A;  3G7G A;  1PHO A;  1MPF A;  4AFK A;  2W81 C;  1GFM A;  1QJ9 A;  3PRN A;  1YS5 A;  3HOE A;  2YPV A;  2XMX A;  4GF4 A;  2KC0 A;  4KR4 A;  4B61 A;  3AAE A;  3VE2 A;  8PRN A;  4D64 A;  1GFQ A;  2YNK A;  1ORM A;  2M06 A;  1Q9G A;  3QRA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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