5PRNA

E1m, y96w, s119w mutant of rh. blastica porin
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTWDSEMGYEASSFGDAQSSFFAYNWKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
source organism Rhodobacter blasticus
molecule tags Membrane protein
total genus 75
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5prnA00
1BT9A 4KRAA 4GCQA 5DL7A 2ODJA 3SYBA 3VY9X 3WI4A 3HW9A 1PHOA 5DL5A 3NSGA 2FGQX 2Y0HA 4FSOA 1HXUA 4FRTA 1E54A 3PRNA 4LSIA 4KR8A 3HWBA 1MPFA 5DL8A 3VZTX 4FRXA 2ZFGA 2K4TA 2FGRA 3VZWX 3O0EA 4KR4A 3SZVA 1GFPA 2PRNA 3POQA 3T24A 8PRNA 1GFOA 2J4UP 3K19A 4LSFA 4FMSA 3SYSA 5PRNA 1OSMA 2ZLDA 3POUA 4FSPA 3VY8X 4C69X 4LSEA 5DL6A 2Y0KA 2OMFA 5FVNA 3A2SX 2XG6A 4FT6A 4FOZA 5JDPA 1BH3A 1GFQA 4RJXA 2Y2XA 3EMNX 3SZDA 1GFMA 2O4VA 4LSHA 3UPGA 4AUIA 2XE3A 4JFBA 2QTKA 4GCSA 2XE5A 1PRNA 2XE2A 6PRNA 4D5UA 3T0SA 1GFNA 1HXXA 7PRNA 4GCPA 3SY7A 3WI5A 3VZUX 2Y0LA 2J1NA 2PORA 3T20A 4D64A 1HXTA 3JTYA 3UU2A 4BUMX 1OPFA 2XE1A 3POXA 4D65A 4RJWA 3SY9A 3PORA 1H6S1 3FYXA
chains in the Genus database with same CATH superfamily
1MM5A 1BT9A 1ZHZA 2KXPB 1MM4A 2YNKA 4KRAA 4N59A 2R4NA 1G90A 4D64A 4GCQA 2R8AA 5DL7A 5ADXL 2JMMA 2ODJA 3SYBA 3AAEB 3A0BO 3VY9X 2KZ7B 4N74A 4C00A 4RLBA 4AYDC 4CTDA 5KAFO 3WI4A 3HW9A 4Z3TA 1PHOA 5DL5A 4E1TA 3NSGA 2FGQX 2Y0HA 3LK3A 3DWNA 4FSOA 2KC0A 2W80C 1HXUA 2LHFA 1E54A 1Q9GA 3PRNA 4FRTA 4LSIA 3AA6A 2N2LA 4AYNA 3BRZA 4KR8A 1P4TA 3HWBA 3AA7A 4XNLA 3AA1B 1MPFA 4FESA 5DL8A 4C4VA 2GE4A 2WJRA 3VZTX 1BXWA 1T1LA 4FRXA 2ZFGA 2K4TA 3LK41 4FZLA 5GTIO 2FGRA 3DZMA 4UB6O 3VZWX 4O4UA 1IZNA 1T16A 3QRAA 3O0EA 4KR4A 4O4XA 4AFKA 5ADXK 2AXTO 4RL9A 3WU2O 1IZNB 4F4BA 3BS0A 5D5DA 3SZVA 1GFPA 5G39A 2XTRA 3DWOX 4G75A 3KVDD 2PRNA 4K3CA 1QJ8A 2F1VA 3PF1A 3POQA 3T24A 4FUVA 8PRNA 1GFOA 4FQEA 2ERVA 3UAQA 3PQSA 4E1SA 4AYMC 2R4OA 2W81C 2J4UP 3K19A 3HOEA 5G3AA 4LSFA 4N58A 3PQUA 3LK3B 2R4PA 4FMSA 5E79O 3SYSA 5PRNA 5T5FA 1OSMA 1YS5A 3AA6B 2ZLDA 4AZLA 3AAAA 3AA0A 3LK2A 4AKMA 3AA7B 4C4VB 2WVPA 2R89A 1THQA 4O3ZA 4O3YA 3C5OA 5IYUA 3POUA 5TISO 3PGUA 4AKRA 4FSPA 3VY8X 1Q9FA 3LK42 4G76A 3KZIO 4C69X 4LSEA 5DL6A 1QJ9A 5AFUL 5B5EO 2Y0KA 1ZHWA 1QJPA 2F1TA 2OMFA 4RLCA 2R88A 5GV0A 5B66O 4FZMA 4JCHA 2M07A 3PGRA 3JCUO 4GF4A 3A2SX 4O49A 5FVNA 2XG6A 4FT6A 5EE2A 4FOZA 5JDPA 4IL6O 1BH3A 1GFQA 4RJXA 2Y2XA 2XMXA 2LFUA 2WJQA 3EMNX 1GFMA 2O4VA 2IWVA 4LSHA 4PJ0O 2XTQA 4PR7A 5KAIO 5H2FO 3GP6A 4AUIA 3UPGA 1ZHTA 2F1CX 2KXPA 2XE3A 2QTKA 4GCSA 4GHBA 2MNHA 4JFBA 3VE2A 1ZHXA 1PRNA 2X27X 2XE2A 2XE5A 3VE1A 4FZNA 6PRNA 4D5UA 2K0LA 2N2MA 3AAAB 3AA0B 3LK2B 3AAEA 3T0SA 4XNKA 1GFNA 2KZ7A 1HXXA 4U9CA 7PRNA 5GTHO 2Y7SA 5AFUK 3DA3A 4GCPA 4AKRB 3SY7A 3WI5A 4K3BA 3VZUX 2R4LA 3NJTA 3HOLA 5G26A 3BRYA 2KDYA 2Y0LA 2J1NA 2PORA 3QRCA 4N75A 4PUXA 4O3WA 4B61A 3T20A 3TZGA 2X9KA 1HXTA 3JTYA 4O3XB 4UB8O 3RBHA 3UU2A 4AYEC 3PGSA 4AYID 1OPFA 1S5LO 2XE1A 1ZHYA 3DA4A 3AA1A 3G7GA 4BUMX 4QQ1A 3POXA 1ORMA 4D65A 2YPVA 2JQYA 3SZDA 4RJWA 3SY9A 2M06A 2IWWA 3V8UA 3A0HO 3PORA 5G38A 2MHLA 1H6S1 3FYXA
chains in the Genus database with same CATH topology
1MM5A 1BT9A 1ZHZA 2KXPB 1MM4A 2YNKA 4KRAA 4N59A 1G90A 4GCQA 5ADXL 5DL7A 2JMMA 2ODJA 3SYBA 3AAEB 3VY9X 2KZ7B 4RLBA 4AYDC 3WI4A 3HW9A 4Z3TA 1PHOA 5DL5A 4E1TA 3NSGA 2FGQX 2Y0HA 3LK3A 4FSOA 2KC0A 2W80C 1HXUA 2LHFA 1E54A 1Q9GA 3PRNA 4FRTA 4LSIA 3AA6A 2N2LA 4AYNA 4KR8A 1P4TA 3HWBA 3AA7A 4XNLA 3AA1B 1MPFA 4FESA 5DL8A 2GE4A 3VZTX 1BXWA 4FRXA 2ZFGA 2K4TA 3LK41 4FZLA 2FGRA 3VZWX 4O4UA 1IZNA 4AFKA 3QRAA 3O0EA 4KR4A 4O4XA 5ADXK 4RL9A 1IZNB 4F4BA 5D5DA 3SZVA 1GFPA 2XTRA 4G75A 3KVDD 2PRNA 1QJ8A 2F1VA 3POQA 3T24A 8PRNA 4FUVA 1GFOA 2ERVA 3UAQA 3PQSA 4E1SA 4AYMC 2W81C 2J4UP 3K19A 3HOEA 4LSFA 4N58A 3PQUA 3LK3B 4FMSA 3SYSA 5PRNA 5T5FA 1OSMA 1YS5A 3AA6B 2ZLDA 4AZLA 3AAAA 3AA0A 3LK2A 4AKMA 3AA7B 1THQA 4O3ZA 4O3YA 3C5OA 5IYUA 3POUA 4AKRA 4FSPA 3VY8X 1Q9FA 3LK42 4G76A 4C69X 4LSEA 5DL6A 1QJ9A 5AFUL 2Y0KA 1ZHWA 1QJPA 2F1TA 2OMFA 4RLCA 5GV0A 4FZMA 4JCHA 2M07A 5FVNA 4GF4A 3A2SX 4O49A 2XG6A 4FT6A 5EE2A 4FOZA 5JDPA 1BH3A 1GFQA 4RJXA 2Y2XA 2XMXA 2LFUA 3EMNX 3SZDA 1GFMA 2O4VA 4LSHA 2XTQA 3UPGA 3GP6A 4AUIA 1ZHTA 2KXPA 2XE3A 4GHBA 2QTKA 4GCSA 4JFBA 2MNHA 3VE2A 4AYID 2XE5A 2X27X 1ZHXA 1PRNA 2XE2A 3VE1A 4FZNA 6PRNA 4D5UA 2K0LA 2N2MA 3AAAB 3AA0B 3LK2B 3AAEA 3T0SA 4XNKA 1GFNA 2KZ7A 1HXXA 4U9CA 7PRNA 2Y7SA 5AFUK 3DA3A 4GCPA 4AKRB 3SY7A 3WI5A 3VZUX 3HOLA 5G26A 2KDYA 2Y0LA 2J1NA 2PORA 3QRCA 4PUXA 4B61A 4O3WA 3T20A 3TZGA 4D64A 1HXTA 3JTYA 4O3XB 3RBHA 3UU2A 4AYEC 4BUMX 1OPFA 2XE1A 3DA4A 1ZHYA 3G7GA 3AA1A 4QQ1A 3POXA 1ORMA 4D65A 2YPVA 4RJWA 3SY9A 2M06A 3V8UA 3PORA 2MHLA 1H6S1 3FYXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BT9 A;  4KRA A;  4GCQ A;  5DL7 A;  2ODJ A;  3SYB A;  3VY9 X;  3WI4 A;  3HW9 A;  1PHO A;  5DL5 A;  3NSG A;  2FGQ X;  2Y0H A;  4FSO A;  1HXU A;  4FRT A;  1E54 A;  3PRN A;  4LSI A;  4KR8 A;  3HWB A;  1MPF A;  5DL8 A;  3VZT X;  4FRX A;  2ZFG A;  2K4T A;  2FGR A;  3VZW X;  3O0E A;  4KR4 A;  3SZV A;  1GFP A;  2PRN A;  3POQ A;  3T24 A;  8PRN A;  1GFO A;  2J4U P;  3K19 A;  4LSF A;  4FMS A;  3SYS A;  5PRN A;  1OSM A;  2ZLD A;  3POU A;  4FSP A;  3VY8 X;  4C69 X;  4LSE A;  5DL6 A;  2Y0K A;  2OMF A;  5FVN A;  3A2S X;  2XG6 A;  4FT6 A;  4FOZ A;  5JDP A;  1BH3 A;  1GFQ A;  4RJX A;  2Y2X A;  3EMN X;  3SZD A;  1GFM A;  2O4V A;  4LSH A;  3UPG A;  4AUI A;  2XE3 A;  4JFB A;  2QTK A;  4GCS A;  2XE5 A;  1PRN A;  2XE2 A;  6PRN A;  4D5U A;  3T0S A;  1GFN A;  1HXX A;  7PRN A;  4GCP A;  3SY7 A;  3WI5 A;  3VZU X;  2Y0L A;  2J1N A;  2POR A;  3T20 A;  4D64 A;  1HXT A;  3JTY A;  3UU2 A;  4BUM X;  1OPF A;  2XE1 A;  3POX A;  4D65 A;  4RJW A;  3SY9 A;  3POR A;  1H6S 1;  3FYX A; 
#chains in the Genus database with same CATH topology
 1MM5 A;  1BT9 A;  1ZHZ A;  2KXP B;  1MM4 A;  2YNK A;  4KRA A;  4N59 A;  2R4N A;  1G90 A;  4D64 A;  4GCQ A;  2R8A A;  5DL7 A;  5ADX L;  2JMM A;  2ODJ A;  3SYB A;  3AAE B;  3A0B O;  3VY9 X;  2KZ7 B;  4N74 A;  4C00 A;  4RLB A;  4AYD C;  4CTD A;  5KAF O;  3WI4 A;  3HW9 A;  4Z3T A;  1PHO A;  5DL5 A;  4E1T A;  3NSG A;  2FGQ X;  2Y0H A;  3LK3 A;  3DWN A;  4FSO A;  2KC0 A;  2W80 C;  1HXU A;  2LHF A;  1E54 A;  1Q9G A;  3PRN A;  4FRT A;  4LSI A;  3AA6 A;  2N2L A;  4AYN A;  3BRZ A;  4KR8 A;  1P4T A;  3HWB A;  3AA7 A;  4XNL A;  3AA1 B;  1MPF A;  4FES A;  5DL8 A;  4C4V A;  2GE4 A;  2WJR A;  3VZT X;  1BXW A;  1T1L A;  4FRX A;  2ZFG A;  2K4T A;  3LK4 1;  4FZL A;  5GTI O;  2FGR A;  3DZM A;  4UB6 O;  3VZW X;  4O4U A;  1IZN A;  1T16 A;  3QRA A;  3O0E A;  4KR4 A;  4O4X A;  4AFK A;  5ADX K;  2AXT O;  4RL9 A;  3WU2 O;  1IZN B;  4F4B A;  3BS0 A;  5D5D A;  3SZV A;  1GFP A;  5G39 A;  2XTR A;  3DWO X;  4G75 A;  3KVD D;  2PRN A;  4K3C A;  1QJ8 A;  2F1V A;  3PF1 A;  3POQ A;  3T24 A;  4FUV A;  8PRN A;  1GFO A;  4FQE A;  2ERV A;  3UAQ A;  3PQS A;  4E1S A;  4AYM C;  2R4O A;  2W81 C;  2J4U P;  3K19 A;  3HOE A;  5G3A A;  4LSF A;  4N58 A;  3PQU A;  3LK3 B;  2R4P A;  4FMS A;  5E79 O;  3SYS A;  5PRN A;  5T5F A;  1OSM A;  1YS5 A;  3AA6 B;  2ZLD A;  4AZL A;  3AAA A;  3AA0 A;  3LK2 A;  4AKM A;  3AA7 B;  4C4V B;  2WVP A;  2R89 A;  1THQ A;  4O3Z A;  4O3Y A;  3C5O A;  5IYU A;  3POU A;  5TIS O;  3PGU A;  4AKR A;  4FSP A;  3VY8 X;  1Q9F A;  3LK4 2;  4G76 A;  3KZI O;  4C69 X;  4LSE A;  5DL6 A;  1QJ9 A;  5AFU L;  5B5E O;  2Y0K A;  1ZHW A;  1QJP A;  2F1T A;  2OMF A;  4RLC A;  2R88 A;  5GV0 A;  5B66 O;  4FZM A;  4JCH A;  2M07 A;  3PGR A;  3JCU O;  4GF4 A;  3A2S X;  4O49 A;  5FVN A;  2XG6 A;  4FT6 A;  5EE2 A;  4FOZ A;  5JDP A;  4IL6 O;  1BH3 A;  1GFQ A;  4RJX A;  2Y2X A;  2XMX A;  2LFU A;  2WJQ A;  3EMN X;  1GFM A;  2O4V A;  2IWV A;  4LSH A;  4PJ0 O;  2XTQ A;  4PR7 A;  5KAI O;  5H2F O;  3GP6 A;  4AUI A;  3UPG A;  1ZHT A;  2F1C X;  2KXP A;  2XE3 A;  2QTK A;  4GCS A;  4GHB A;  2MNH A;  4JFB A;  3VE2 A;  1ZHX A;  1PRN A;  2X27 X;  2XE2 A;  2XE5 A;  3VE1 A;  4FZN A;  6PRN A;  4D5U A;  2K0L A;  2N2M A;  3AAA B;  3AA0 B;  3LK2 B;  3AAE A;  3T0S A;  4XNK A;  1GFN A;  2KZ7 A;  1HXX A;  4U9C A;  7PRN A;  5GTH O;  2Y7S A;  5AFU K;  3DA3 A;  4GCP A;  4AKR B;  3SY7 A;  3WI5 A;  4K3B A;  3VZU X;  2R4L A;  3NJT A;  3HOL A;  5G26 A;  3BRY A;  2KDY A;  2Y0L A;  2J1N A;  2POR A;  3QRC A;  4N75 A;  4PUX A;  4O3W A;  4B61 A;  3T20 A;  3TZG A;  2X9K A;  1HXT A;  3JTY A;  4O3X B;  4UB8 O;  3RBH A;  3UU2 A;  4AYE C;  3PGS A;  4AYI D;  1OPF A;  1S5L O;  2XE1 A;  1ZHY A;  3DA4 A;  3AA1 A;  3G7G A;  4BUM X;  4QQ1 A;  3POX A;  1ORM A;  4D65 A;  2YPV A;  2JQY A;  3SZD A;  4RJW A;  3SY9 A;  2M06 A;  2IWW A;  3V8U A;  3A0H O;  3POR A;  5G38 A;  2MHL A;  1H6S 1;  3FYX A; 
#chains in the Genus database with same CATH homology
 1MM5 A;  1BT9 A;  1ZHZ A;  2KXP B;  1MM4 A;  2YNK A;  4KRA A;  4N59 A;  1G90 A;  4GCQ A;  5ADX L;  5DL7 A;  2JMM A;  2ODJ A;  3SYB A;  3AAE B;  3VY9 X;  2KZ7 B;  4RLB A;  4AYD C;  3WI4 A;  3HW9 A;  4Z3T A;  1PHO A;  5DL5 A;  4E1T A;  3NSG A;  2FGQ X;  2Y0H A;  3LK3 A;  4FSO A;  2KC0 A;  2W80 C;  1HXU A;  2LHF A;  1E54 A;  1Q9G A;  3PRN A;  4FRT A;  4LSI A;  3AA6 A;  2N2L A;  4AYN A;  4KR8 A;  1P4T A;  3HWB A;  3AA7 A;  4XNL A;  3AA1 B;  1MPF A;  4FES A;  5DL8 A;  2GE4 A;  3VZT X;  1BXW A;  4FRX A;  2ZFG A;  2K4T A;  3LK4 1;  4FZL A;  2FGR A;  3VZW X;  4O4U A;  1IZN A;  4AFK A;  3QRA A;  3O0E A;  4KR4 A;  4O4X A;  5ADX K;  4RL9 A;  1IZN B;  4F4B A;  5D5D A;  3SZV A;  1GFP A;  2XTR A;  4G75 A;  3KVD D;  2PRN A;  1QJ8 A;  2F1V A;  3POQ A;  3T24 A;  8PRN A;  4FUV A;  1GFO A;  2ERV A;  3UAQ A;  3PQS A;  4E1S A;  4AYM C;  2W81 C;  2J4U P;  3K19 A;  3HOE A;  4LSF A;  4N58 A;  3PQU A;  3LK3 B;  4FMS A;  3SYS A;  5PRN A;  5T5F A;  1OSM A;  1YS5 A;  3AA6 B;  2ZLD A;  4AZL A;  3AAA A;  3AA0 A;  3LK2 A;  4AKM A;  3AA7 B;  1THQ A;  4O3Z A;  4O3Y A;  3C5O A;  5IYU A;  3POU A;  4AKR A;  4FSP A;  3VY8 X;  1Q9F A;  3LK4 2;  4G76 A;  4C69 X;  4LSE A;  5DL6 A;  1QJ9 A;  5AFU L;  2Y0K A;  1ZHW A;  1QJP A;  2F1T A;  2OMF A;  4RLC A;  5GV0 A;  4FZM A;  4JCH A;  2M07 A;  5FVN A;  4GF4 A;  3A2S X;  4O49 A;  2XG6 A;  4FT6 A;  5EE2 A;  4FOZ A;  5JDP A;  1BH3 A;  1GFQ A;  4RJX A;  2Y2X A;  2XMX A;  2LFU A;  3EMN X;  3SZD A;  1GFM A;  2O4V A;  4LSH A;  2XTQ A;  3UPG A;  3GP6 A;  4AUI A;  1ZHT A;  2KXP A;  2XE3 A;  4GHB A;  2QTK A;  4GCS A;  4JFB A;  2MNH A;  3VE2 A;  4AYI D;  2XE5 A;  2X27 X;  1ZHX A;  1PRN A;  2XE2 A;  3VE1 A;  4FZN A;  6PRN A;  4D5U A;  2K0L A;  2N2M A;  3AAA B;  3AA0 B;  3LK2 B;  3AAE A;  3T0S A;  4XNK A;  1GFN A;  2KZ7 A;  1HXX A;  4U9C A;  7PRN A;  2Y7S A;  5AFU K;  3DA3 A;  4GCP A;  4AKR B;  3SY7 A;  3WI5 A;  3VZU X;  3HOL A;  5G26 A;  2KDY A;  2Y0L A;  2J1N A;  2POR A;  3QRC A;  4PUX A;  4B61 A;  4O3W A;  3T20 A;  3TZG A;  4D64 A;  1HXT A;  3JTY A;  4O3X B;  3RBH A;  3UU2 A;  4AYE C;  4BUM X;  1OPF A;  2XE1 A;  3DA4 A;  1ZHY A;  3G7G A;  3AA1 A;  4QQ1 A;  3POX A;  1ORM A;  4D65 A;  2YPV A;  4RJW A;  3SY9 A;  2M06 A;  3V8U A;  3POR A;  2MHL A;  1H6S 1;  3FYX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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