5SYOA

Crystal structure of a chimeric acetylcholine binding protein from aplysia californica (ac-achbp) containing loop c from the human alpha 3 nicotinic acetylcholine receptor in complex with cytisine
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
207
structure length
199
Chain Sequence
LHSQANLMRLKSDLFYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQYKHDIKYEEIYPDVVLVVKFRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine-binding protein
source organism Aplysia californica, homo sapiens
publication title Crystal structure of a chimeric acetylcholine binding protein from Aplysia californica (Ac-AChBP) containing loop C from the human alpha 3 nicotinic acetylcholine receptor in complex with Cytisine
rcsb
molecule keywords Soluble acetylcholine receptor, Neuronal acetylcholine recep
total genus 46
structure length 199
sequence length 207
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2016-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5syoA00
5BRXA 5CFBA 2QC1B 2ZJVA 3UU6A 2XQAA 2Y58A 3SH1A 2Y54A 2BYSA 3T4MA 3TLUA 2BYRA 4HFCA 3UQ7A 3PEOA 2YN6A 4ZR6A 2XQ5A 3TLTA 2XYSA 5AFKA 5AFMB 4ILBA 4IREA 3WTHA 3ZKRA 5J5GA 5AFNA 4IL9A 4XK9A 5HEGA 4LMLA 5HEJA 4ZK4A 4Z91A 5L4EA 2YOEA 4QH4A 3WTIA 2X00D 3C79A 5AFJA 3WTKA 2XNTA 1UX2A 3TLVA 4ZZBA 3U8MA 5L47A 2XQ8A 4LMJA 4QAAA 3JAFA 4XHEA 3RIFA 3U8NA 3ZDHA 5KZUA 5J5IA 2X00A 4X5TA 3UUBA 3TLWA 4HQPA 3RI5A 2BJ0A 2BG9A 5AFMA 2WNJA 5J5FA 5HCJA 4EZ1A 2BG9B 2UZ6A 3EHZA 4HFEA 4F8HA 3SQ9A 3UU5A 4HFIA 3RQWA 4UXUA 5AINA 4AFTA 4HFBA 2WNCA 4UM1A 5J0ZA 5HEHA 2XZ6A 4ZK1A 4BFQA 3TLSA 1UW6A 3SQ6A 3RQUA 2WZYA 4UY2A 3U8JA 4D01A 2XQ9A 4NPPA 5AFHA 2C9TA 2WN9A 3P4WA 1UV6A 4COFA 4QACA 5FJVA 2ZJUA 4PIRA 4TWDA 2Y7YA 4ILAA 2XZ5A 5HEUA 3UU4A 3U8LA 4WV9A 4ZJTA 3WTJA 5LG3A 5HEOA 3RIAA 4UM3S 3SIOA 4ILCA 4TNWA 2XQ3A 3WTOA 3JADA 5IUXA 2XQ7A 3WTMA 4NZBA 5BW2A 4HFDA 2BYPA 3EAMA 2XYTA 3P50A 4BQTA 3GUAA 3LSVA 2XQ4A 3U8KA 3UU3A 3ZDGA 4ALXA 2BR8A 4ZZCA 5JMEA 2Y56A 4TWHA 5KE4A 2XQ6A 4IL4A 4TWFA 4TNVA 3UU8A 5J5HA 2PGZA 4QABA 2BYNA 3RHWA 4UM3A 5BP0A 4Z90A 4ZRUA 2BG9C 1I9BA 2YMDA 3EI0A 2W8FA 4A98A 2PH9A 3WTLA 4ZJSA 3JAEA 5LXBA 4A97A 2W8GA 4HFHA 3PMZA 2BYQA 4LMKA 5CO5A 4B5DA 2YMEA 4AFGA 3UQ4A 2YKSA 4UM3P 3WIPA 4QH1A 5HCMA 2XNUA 5TVCA 2VL0A 2WNLA 2XNVA 2BR7A 3IGQA 4QH5A 4FRRA 2Y57A 3C84A 4DBMA 5L4HA 5AFLA 2BG9E 5SYOA 4AFHA 3WTNA
chains in the Genus database with same CATH superfamily
5BRXA 5CFBA 2QC1B 2ZJVA 3UU6A 2XQAA 2Y58A 3SH1A 2Y54A 2BYSA 3T4MA 3TLUA 2BYRA 4HFCA 3UQ7A 3PEOA 2YN6A 4ZR6A 2XQ5A 3TLTA 2XYSA 5AFKA 5AFMB 4ILBA 4IREA 3WTHA 3ZKRA 5J5GA 5AFNA 4IL9A 4XK9A 5HEGA 4LMLA 5HEJA 4ZK4A 4Z91A 5L4EA 2YOEA 4QH4A 3WTIA 2X00D 3C79A 5AFJA 3WTKA 2XNTA 1UX2A 3TLVA 4ZZBA 3U8MA 5L47A 2XQ8A 4LMJA 4QAAA 3JAFA 4XHEA 3RIFA 3U8NA 3ZDHA 5KZUA 5J5IA 2X00A 4X5TA 3UUBA 3TLWA 4HQPA 3RI5A 2BJ0A 2BG9A 5AFMA 2WNJA 5J5FA 5HCJA 4EZ1A 2BG9B 2UZ6A 3EHZA 4HFEA 4F8HA 3SQ9A 3UU5A 4HFIA 3RQWA 4UXUA 5AINA 4AFTA 4HFBA 2WNCA 4UM1A 5J0ZA 5HEHA 2XZ6A 4ZK1A 4BFQA 3TLSA 1UW6A 3SQ6A 3RQUA 2WZYA 4UY2A 3U8JA 4D01A 2XQ9A 4NPPA 5AFHA 2C9TA 2WN9A 3P4WA 1UV6A 4COFA 4QACA 5FJVA 2ZJUA 4PIRA 4TWDA 2Y7YA 4ILAA 2XZ5A 5HEUA 3UU4A 3U8LA 4WV9A 4ZJTA 3WTJA 5LG3A 5HEOA 3RIAA 4UM3S 3SIOA 4ILCA 4TNWA 2XQ3A 3WTOA 3JADA 5IUXA 2XQ7A 3WTMA 4NZBA 5BW2A 4HFDA 2BYPA 3EAMA 2XYTA 3P50A 4BQTA 3GUAA 3LSVA 2XQ4A 3U8KA 3UU3A 3ZDGA 4ALXA 2BR8A 4ZZCA 5JMEA 2Y56A 4TWHA 5KE4A 2XQ6A 4IL4A 4TWFA 4TNVA 3UU8A 5J5HA 2PGZA 4QABA 2BYNA 3RHWA 4UM3A 5BP0A 4Z90A 4ZRUA 2BG9C 1I9BA 2YMDA 3EI0A 2W8FA 4A98A 2PH9A 3WTLA 4ZJSA 3JAEA 5LXBA 4A97A 2W8GA 4HFHA 3PMZA 2BYQA 4LMKA 5CO5A 4B5DA 2YMEA 4AFGA 3UQ4A 2YKSA 4UM3P 3WIPA 4QH1A 5HCMA 2XNUA 5TVCA 2VL0A 2WNLA 2XNVA 2BR7A 3IGQA 4QH5A 4FRRA 2Y57A 3C84A 4DBMA 5L4HA 5AFLA 2BG9E 5SYOA 4AFHA 3WTNA
chains in the Genus database with same CATH topology
5BRXA 5CFBA 2QC1B 2ZJVA 3UU6A 2XQAA 2Y58A 3SH1A 2Y54A 2BYSA 3T4MA 3TLUA 2BYRA 4HFCA 3UQ7A 3PEOA 2YN6A 4ZR6A 2XQ5A 3TLTA 2XYSA 5AFKA 5AFMB 4ILBA 4IREA 3WTHA 3ZKRA 5J5GA 5AFNA 4IL9A 4XK9A 5HEGA 4LMLA 5HEJA 4ZK4A 4Z91A 5L4EA 2YOEA 4QH4A 3WTIA 2X00D 3C79A 5AFJA 3WTKA 2XNTA 1UX2A 3TLVA 4ZZBA 3U8MA 5L47A 2XQ8A 4LMJA 4QAAA 3JAFA 4XHEA 3RIFA 3U8NA 3ZDHA 5KZUA 5J5IA 2X00A 4X5TA 3UUBA 3TLWA 4HQPA 3RI5A 2BJ0A 2BG9A 5AFMA 2WNJA 5J5FA 5HCJA 4EZ1A 2BG9B 2UZ6A 3EHZA 4HFEA 4F8HA 3SQ9A 3UU5A 4HFIA 3RQWA 4UXUA 5AINA 4AFTA 4HFBA 2WNCA 4UM1A 5J0ZA 5HEHA 2XZ6A 4ZK1A 4BFQA 3TLSA 1UW6A 3SQ6A 3RQUA 2WZYA 4UY2A 3U8JA 4D01A 2XQ9A 4NPPA 5AFHA 2C9TA 2WN9A 3P4WA 1UV6A 4COFA 4QACA 5FJVA 2ZJUA 4PIRA 4TWDA 2Y7YA 4ILAA 2XZ5A 5HEUA 3UU4A 3U8LA 4WV9A 4ZJTA 3WTJA 5LG3A 5HEOA 3RIAA 4UM3S 3SIOA 4ILCA 4TNWA 2XQ3A 3WTOA 3JADA 5IUXA 2XQ7A 3WTMA 4NZBA 5BW2A 4HFDA 2BYPA 3EAMA 2XYTA 3P50A 4BQTA 3GUAA 3LSVA 2XQ4A 3U8KA 3UU3A 3ZDGA 4ALXA 2BR8A 4ZZCA 5JMEA 2Y56A 4TWHA 5KE4A 2XQ6A 4IL4A 4TWFA 4TNVA 3UU8A 5J5HA 2PGZA 4QABA 2BYNA 3RHWA 4UM3A 5BP0A 4Z90A 4ZRUA 2BG9C 1I9BA 2YMDA 3EI0A 2W8FA 4A98A 2PH9A 3WTLA 4ZJSA 3JAEA 5LXBA 4A97A 2W8GA 4HFHA 3PMZA 2BYQA 4LMKA 5CO5A 4B5DA 2YMEA 4AFGA 3UQ4A 2YKSA 4UM3P 3WIPA 4QH1A 5HCMA 2XNUA 5TVCA 2VL0A 2WNLA 2XNVA 2BR7A 3IGQA 4QH5A 4FRRA 2Y57A 3C84A 4DBMA 5L4HA 5AFLA 2BG9E 5SYOA 4AFHA 3WTNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BRX A;  5CFB A;  2QC1 B;  2ZJV A;  3UU6 A;  2XQA A;  2Y58 A;  3SH1 A;  2Y54 A;  2BYS A;  3T4M A;  3TLU A;  2BYR A;  4HFC A;  3UQ7 A;  3PEO A;  2YN6 A;  4ZR6 A;  2XQ5 A;  3TLT A;  2XYS A;  5AFK A;  5AFM B;  4ILB A;  4IRE A;  3WTH A;  3ZKR A;  5J5G A;  5AFN A;  4IL9 A;  4XK9 A;  5HEG A;  4LML A;  5HEJ A;  4ZK4 A;  4Z91 A;  5L4E A;  2YOE A;  4QH4 A;  3WTI A;  2X00 D;  3C79 A;  5AFJ A;  3WTK A;  2XNT A;  1UX2 A;  3TLV A;  4ZZB A;  3U8M A;  5L47 A;  2XQ8 A;  4LMJ A;  4QAA A;  3JAF A;  4XHE A;  3RIF A;  3U8N A;  3ZDH A;  5KZU A;  5J5I A;  2X00 A;  4X5T A;  3UUB A;  3TLW A;  4HQP A;  3RI5 A;  2BJ0 A;  2BG9 A;  5AFM A;  2WNJ A;  5J5F A;  5HCJ A;  4EZ1 A;  2BG9 B;  2UZ6 A;  3EHZ A;  4HFE A;  4F8H A;  3SQ9 A;  3UU5 A;  4HFI A;  3RQW A;  4UXU A;  5AIN A;  4AFT A;  4HFB A;  2WNC A;  4UM1 A;  5J0Z A;  5HEH A;  2XZ6 A;  4ZK1 A;  4BFQ A;  3TLS A;  1UW6 A;  3SQ6 A;  3RQU A;  2WZY A;  4UY2 A;  3U8J A;  4D01 A;  2XQ9 A;  4NPP A;  5AFH A;  2C9T A;  2WN9 A;  3P4W A;  1UV6 A;  4COF A;  4QAC A;  5FJV A;  2ZJU A;  4PIR A;  4TWD A;  2Y7Y A;  4ILA A;  2XZ5 A;  5HEU A;  3UU4 A;  3U8L A;  4WV9 A;  4ZJT A;  3WTJ A;  5LG3 A;  5HEO A;  3RIA A;  4UM3 S;  3SIO A;  4ILC A;  4TNW A;  2XQ3 A;  3WTO A;  3JAD A;  5IUX A;  2XQ7 A;  3WTM A;  4NZB A;  5BW2 A;  4HFD A;  2BYP A;  3EAM A;  2XYT A;  3P50 A;  4BQT A;  3GUA A;  3LSV A;  2XQ4 A;  3U8K A;  3UU3 A;  3ZDG A;  4ALX A;  2BR8 A;  4ZZC A;  5JME A;  2Y56 A;  4TWH A;  5KE4 A;  2XQ6 A;  4IL4 A;  4TWF A;  4TNV A;  3UU8 A;  5J5H A;  2PGZ A;  4QAB A;  2BYN A;  3RHW A;  4UM3 A;  5BP0 A;  4Z90 A;  4ZRU A;  2BG9 C;  1I9B A;  2YMD A;  3EI0 A;  2W8F A;  4A98 A;  2PH9 A;  3WTL A;  4ZJS A;  3JAE A;  5LXB A;  4A97 A;  2W8G A;  4HFH A;  3PMZ A;  2BYQ A;  4LMK A;  5CO5 A;  4B5D A;  2YME A;  4AFG A;  3UQ4 A;  2YKS A;  4UM3 P;  3WIP A;  4QH1 A;  5HCM A;  2XNU A;  5TVC A;  2VL0 A;  2WNL A;  2XNV A;  2BR7 A;  3IGQ A;  4QH5 A;  4FRR A;  2Y57 A;  3C84 A;  4DBM A;  5L4H A;  5AFL A;  2BG9 E;  5SYO A;  4AFH A;  3WTN A; 
#chains in the Genus database with same CATH topology
 5BRX A;  5CFB A;  2QC1 B;  2ZJV A;  3UU6 A;  2XQA A;  2Y58 A;  3SH1 A;  2Y54 A;  2BYS A;  3T4M A;  3TLU A;  2BYR A;  4HFC A;  3UQ7 A;  3PEO A;  2YN6 A;  4ZR6 A;  2XQ5 A;  3TLT A;  2XYS A;  5AFK A;  5AFM B;  4ILB A;  4IRE A;  3WTH A;  3ZKR A;  5J5G A;  5AFN A;  4IL9 A;  4XK9 A;  5HEG A;  4LML A;  5HEJ A;  4ZK4 A;  4Z91 A;  5L4E A;  2YOE A;  4QH4 A;  3WTI A;  2X00 D;  3C79 A;  5AFJ A;  3WTK A;  2XNT A;  1UX2 A;  3TLV A;  4ZZB A;  3U8M A;  5L47 A;  2XQ8 A;  4LMJ A;  4QAA A;  3JAF A;  4XHE A;  3RIF A;  3U8N A;  3ZDH A;  5KZU A;  5J5I A;  2X00 A;  4X5T A;  3UUB A;  3TLW A;  4HQP A;  3RI5 A;  2BJ0 A;  2BG9 A;  5AFM A;  2WNJ A;  5J5F A;  5HCJ A;  4EZ1 A;  2BG9 B;  2UZ6 A;  3EHZ A;  4HFE A;  4F8H A;  3SQ9 A;  3UU5 A;  4HFI A;  3RQW A;  4UXU A;  5AIN A;  4AFT A;  4HFB A;  2WNC A;  4UM1 A;  5J0Z A;  5HEH A;  2XZ6 A;  4ZK1 A;  4BFQ A;  3TLS A;  1UW6 A;  3SQ6 A;  3RQU A;  2WZY A;  4UY2 A;  3U8J A;  4D01 A;  2XQ9 A;  4NPP A;  5AFH A;  2C9T A;  2WN9 A;  3P4W A;  1UV6 A;  4COF A;  4QAC A;  5FJV A;  2ZJU A;  4PIR A;  4TWD A;  2Y7Y A;  4ILA A;  2XZ5 A;  5HEU A;  3UU4 A;  3U8L A;  4WV9 A;  4ZJT A;  3WTJ A;  5LG3 A;  5HEO A;  3RIA A;  4UM3 S;  3SIO A;  4ILC A;  4TNW A;  2XQ3 A;  3WTO A;  3JAD A;  5IUX A;  2XQ7 A;  3WTM A;  4NZB A;  5BW2 A;  4HFD A;  2BYP A;  3EAM A;  2XYT A;  3P50 A;  4BQT A;  3GUA A;  3LSV A;  2XQ4 A;  3U8K A;  3UU3 A;  3ZDG A;  4ALX A;  2BR8 A;  4ZZC A;  5JME A;  2Y56 A;  4TWH A;  5KE4 A;  2XQ6 A;  4IL4 A;  4TWF A;  4TNV A;  3UU8 A;  5J5H A;  2PGZ A;  4QAB A;  2BYN A;  3RHW A;  4UM3 A;  5BP0 A;  4Z90 A;  4ZRU A;  2BG9 C;  1I9B A;  2YMD A;  3EI0 A;  2W8F A;  4A98 A;  2PH9 A;  3WTL A;  4ZJS A;  3JAE A;  5LXB A;  4A97 A;  2W8G A;  4HFH A;  3PMZ A;  2BYQ A;  4LMK A;  5CO5 A;  4B5D A;  2YME A;  4AFG A;  3UQ4 A;  2YKS A;  4UM3 P;  3WIP A;  4QH1 A;  5HCM A;  2XNU A;  5TVC A;  2VL0 A;  2WNL A;  2XNV A;  2BR7 A;  3IGQ A;  4QH5 A;  4FRR A;  2Y57 A;  3C84 A;  4DBM A;  5L4H A;  5AFL A;  2BG9 E;  5SYO A;  4AFH A;  3WTN A; 
#chains in the Genus database with same CATH homology
 5BRX A;  5CFB A;  2QC1 B;  2ZJV A;  3UU6 A;  2XQA A;  2Y58 A;  3SH1 A;  2Y54 A;  2BYS A;  3T4M A;  3TLU A;  2BYR A;  4HFC A;  3UQ7 A;  3PEO A;  2YN6 A;  4ZR6 A;  2XQ5 A;  3TLT A;  2XYS A;  5AFK A;  5AFM B;  4ILB A;  4IRE A;  3WTH A;  3ZKR A;  5J5G A;  5AFN A;  4IL9 A;  4XK9 A;  5HEG A;  4LML A;  5HEJ A;  4ZK4 A;  4Z91 A;  5L4E A;  2YOE A;  4QH4 A;  3WTI A;  2X00 D;  3C79 A;  5AFJ A;  3WTK A;  2XNT A;  1UX2 A;  3TLV A;  4ZZB A;  3U8M A;  5L47 A;  2XQ8 A;  4LMJ A;  4QAA A;  3JAF A;  4XHE A;  3RIF A;  3U8N A;  3ZDH A;  5KZU A;  5J5I A;  2X00 A;  4X5T A;  3UUB A;  3TLW A;  4HQP A;  3RI5 A;  2BJ0 A;  2BG9 A;  5AFM A;  2WNJ A;  5J5F A;  5HCJ A;  4EZ1 A;  2BG9 B;  2UZ6 A;  3EHZ A;  4HFE A;  4F8H A;  3SQ9 A;  3UU5 A;  4HFI A;  3RQW A;  4UXU A;  5AIN A;  4AFT A;  4HFB A;  2WNC A;  4UM1 A;  5J0Z A;  5HEH A;  2XZ6 A;  4ZK1 A;  4BFQ A;  3TLS A;  1UW6 A;  3SQ6 A;  3RQU A;  2WZY A;  4UY2 A;  3U8J A;  4D01 A;  2XQ9 A;  4NPP A;  5AFH A;  2C9T A;  2WN9 A;  3P4W A;  1UV6 A;  4COF A;  4QAC A;  5FJV A;  2ZJU A;  4PIR A;  4TWD A;  2Y7Y A;  4ILA A;  2XZ5 A;  5HEU A;  3UU4 A;  3U8L A;  4WV9 A;  4ZJT A;  3WTJ A;  5LG3 A;  5HEO A;  3RIA A;  4UM3 S;  3SIO A;  4ILC A;  4TNW A;  2XQ3 A;  3WTO A;  3JAD A;  5IUX A;  2XQ7 A;  3WTM A;  4NZB A;  5BW2 A;  4HFD A;  2BYP A;  3EAM A;  2XYT A;  3P50 A;  4BQT A;  3GUA A;  3LSV A;  2XQ4 A;  3U8K A;  3UU3 A;  3ZDG A;  4ALX A;  2BR8 A;  4ZZC A;  5JME A;  2Y56 A;  4TWH A;  5KE4 A;  2XQ6 A;  4IL4 A;  4TWF A;  4TNV A;  3UU8 A;  5J5H A;  2PGZ A;  4QAB A;  2BYN A;  3RHW A;  4UM3 A;  5BP0 A;  4Z90 A;  4ZRU A;  2BG9 C;  1I9B A;  2YMD A;  3EI0 A;  2W8F A;  4A98 A;  2PH9 A;  3WTL A;  4ZJS A;  3JAE A;  5LXB A;  4A97 A;  2W8G A;  4HFH A;  3PMZ A;  2BYQ A;  4LMK A;  5CO5 A;  4B5D A;  2YME A;  4AFG A;  3UQ4 A;  2YKS A;  4UM3 P;  3WIP A;  4QH1 A;  5HCM A;  2XNU A;  5TVC A;  2VL0 A;  2WNL A;  2XNV A;  2BR7 A;  3IGQ A;  4QH5 A;  4FRR A;  2Y57 A;  3C84 A;  4DBM A;  5L4H A;  5AFL A;  2BG9 E;  5SYO A;  4AFH A;  3WTN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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