5SYOA

Crystal structure of a chimeric acetylcholine binding protein from aplysia californica (ac-achbp) containing loop c from the human alpha 3 nicotinic acetylcholine receptor in complex with cytisine
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
207
structure length
199
Chain Sequence
LHSQANLMRLKSDLFYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQYKHDIKYEEIYPDVVLVVKFRE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a chimeric acetylcholine binding protein from Aplysia californica (Ac-AChBP) containing loop C from the human alpha 3 nicotinic acetylcholine receptor in complex with Cytisine
rcsb
molecule keywords Soluble acetylcholine receptor, Neuronal acetylcholine recep
source organism Aplysia californica, homo sapiens
molecule tags Acetylcholine-binding protein
total genus 46
structure length 199
sequence length 207
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2016-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5syoA00
2XZ5A 4PIRA 4ALXA 3PMZA 4ZR6A 2XQ4A 3RIAA 2QC1B 4NZBA 3U8KA 5AFHA 4HFEA 4QH5A 5J5GA 3WTKA 5BP0A 4ILAA 3UU4A 4COFA 4AFGA 2BJ0A 2XQ8A 4NPPA 4UY2A 2XNVA 4LMLA 5LXBA 3TLWA 2C9TA 5HCJA 5HEHA 5KZUA 4DBMA 2XQ9A 5HEUA 2YMDA 1UV6A 4UM1A 2BG9C 3SQ9A 2Y58A 4ILCA 5AFKA 3UU8A 2XQAA 3RQWA 5FJVA 2XNTA 4HFHA 2YOEA 5L4HA 4TWDA 3ZDHA 3ZKRA 4ZZBA 1UW6A 2BYSA 4BQTA 2BR8A 4QAAA 4B5DA 4D01A 3RI5A 5J0ZA 2Y56A 3JAEA 3WTLA 4ZZCA 4XK9A 3RIFA 2XYSA 2WZYA 4UM3S 3WTOA 5AFJA 4LMJA 5J5IA 5TVCA 4TNWA 3WTNA 3P4WA 4IL4A 3JAFA 3T4MA 3C84A 4ZJTA 4QACA 5CO5A 5J5FA 4EZ1A 5HEJA 2XQ7A 3UUBA 5AFLA 3EI0A 3SQ6A 4BFQA 2VL0A 4TWFA 5BW2A 3EHZA 3WTMA 2Y57A 4HQPA 3WTJA 3U8NA 3EAMA 4TNVA 3JADA 2XQ6A 5HCMA 2W8GA 5CFBA 4Z91A 4TWHA 4F8HA 5L47A 2PH9A 2YKSA 2WNLA 4X5TA 3LSVA 4IL9A 3TLTA 5KE4A 5SYOA 2BYRA 2XQ5A 4QH4A 4ZK1A 2BR7A 2X00D 2XNUA 3PEOA 2BG9A 2XZ6A 1UX2A 3U8JA 3P50A 4AFHA 3SH1A 4HFIA 5L4EA 2XQ3A 2YN6A 4HFDA 5HEGA 1I9BA 3TLSA 4HFCA 2WN9A 5AFMA 4ZRUA 3WIPA 2W8FA 4XHEA 3WTIA 4FRRA 5JMEA 3IGQA 4QH1A 2UZ6A 4Z90A 3RHWA 3TLVA 2BYQA 3RQUA 3ZDGA 4AFTA 4UM3A 3UQ7A 2ZJVA 5LG3A 2ZJUA 3SIOA 3TLUA 4HFBA 3UU6A 3U8MA 3WTHA 4ILBA 4A97A 5AFNA 4ZK4A 2BG9E 2WNCA 5J5HA 2BG9B 4IREA 2WNJA 5BRXA 2Y54A 4LMKA 3GUAA 4UXUA 2YMEA 4ZJSA 3C79A 2BYPA 3UQ4A 4UM3P 4A98A 4WV9A 5HEOA 5IUXA 3UU3A 5AFMB 5AINA 4QABA 2PGZA 2Y7YA 3UU5A 2X00A 3U8LA 2BYNA 2XYTA
chains in the Genus database with same CATH superfamily
2XZ5A 4PIRA 4ALXA 3PMZA 4ZR6A 2XQ4A 3RIAA 2QC1B 4NZBA 3U8KA 5AFHA 4HFEA 4QH5A 5J5GA 3WTKA 5BP0A 4ILAA 3UU4A 4COFA 4AFGA 2BJ0A 2XQ8A 4NPPA 4UY2A 2XNVA 4LMLA 5LXBA 3TLWA 2C9TA 5HCJA 5HEHA 5KZUA 4DBMA 2XQ9A 5HEUA 2YMDA 1UV6A 4UM1A 2BG9C 3SQ9A 2Y58A 4ILCA 5AFKA 3UU8A 2XQAA 3RQWA 5FJVA 2XNTA 4HFHA 2YOEA 5L4HA 4TWDA 3ZDHA 3ZKRA 4ZZBA 1UW6A 2BYSA 4BQTA 2BR8A 4QAAA 4B5DA 4D01A 3RI5A 5J0ZA 2Y56A 3JAEA 3WTLA 4ZZCA 4XK9A 3RIFA 2XYSA 2WZYA 4UM3S 3WTOA 5AFJA 4LMJA 5J5IA 5TVCA 4TNWA 3WTNA 3P4WA 4IL4A 3JAFA 3T4MA 3C84A 4ZJTA 4QACA 5CO5A 5J5FA 4EZ1A 5HEJA 2XQ7A 3UUBA 5AFLA 3EI0A 3SQ6A 4BFQA 2VL0A 4TWFA 5BW2A 3EHZA 3WTMA 2Y57A 4HQPA 3WTJA 3U8NA 3EAMA 4TNVA 3JADA 2XQ6A 5HCMA 2W8GA 5CFBA 4Z91A 4TWHA 4F8HA 5L47A 2PH9A 2YKSA 2WNLA 4X5TA 3LSVA 4IL9A 3TLTA 5KE4A 5SYOA 2BYRA 2XQ5A 4QH4A 4ZK1A 2BR7A 2X00D 2XNUA 3PEOA 2BG9A 2XZ6A 1UX2A 3U8JA 3P50A 4AFHA 3SH1A 4HFIA 5L4EA 2XQ3A 2YN6A 4HFDA 5HEGA 1I9BA 3TLSA 4HFCA 2WN9A 5AFMA 4ZRUA 3WIPA 2W8FA 4XHEA 3WTIA 4FRRA 5JMEA 3IGQA 4QH1A 2UZ6A 4Z90A 3RHWA 3TLVA 2BYQA 3RQUA 3ZDGA 4AFTA 4UM3A 3UQ7A 2ZJVA 5LG3A 2ZJUA 3SIOA 3TLUA 4HFBA 3UU6A 3U8MA 3WTHA 4ILBA 4A97A 5AFNA 4ZK4A 2BG9E 2WNCA 5J5HA 2BG9B 4IREA 2WNJA 5BRXA 2Y54A 4LMKA 3GUAA 4UXUA 2YMEA 4ZJSA 3C79A 2BYPA 3UQ4A 4UM3P 4A98A 4WV9A 5HEOA 5IUXA 3UU3A 5AFMB 5AINA 4QABA 2PGZA 2Y7YA 3UU5A 2X00A 3U8LA 2BYNA 2XYTA
chains in the Genus database with same CATH topology
2XZ5A 4PIRA 4ALXA 3PMZA 4ZR6A 2XQ4A 3RIAA 2QC1B 4NZBA 3U8KA 5AFHA 4HFEA 4QH5A 5J5GA 3WTKA 5BP0A 4ILAA 3UU4A 4COFA 4AFGA 2BJ0A 2XQ8A 4NPPA 4UY2A 2XNVA 4LMLA 5LXBA 3TLWA 2C9TA 5HCJA 5HEHA 5KZUA 4DBMA 2XQ9A 5HEUA 2YMDA 1UV6A 4UM1A 2BG9C 3SQ9A 2Y58A 4ILCA 5AFKA 3UU8A 2XQAA 3RQWA 5FJVA 2XNTA 4HFHA 2YOEA 5L4HA 4TWDA 3ZDHA 3ZKRA 4ZZBA 1UW6A 2BYSA 4BQTA 2BR8A 4QAAA 4B5DA 4D01A 3RI5A 5J0ZA 2Y56A 3JAEA 3WTLA 4ZZCA 4XK9A 3RIFA 2XYSA 2WZYA 4UM3S 3WTOA 5AFJA 4LMJA 5J5IA 5TVCA 4TNWA 3WTNA 3P4WA 4IL4A 3JAFA 3T4MA 3C84A 4ZJTA 4QACA 5CO5A 5J5FA 4EZ1A 5HEJA 2XQ7A 3UUBA 5AFLA 3EI0A 3SQ6A 4BFQA 2VL0A 4TWFA 5BW2A 3EHZA 3WTMA 2Y57A 4HQPA 3WTJA 3U8NA 3EAMA 4TNVA 3JADA 2XQ6A 5HCMA 2W8GA 5CFBA 4Z91A 4TWHA 4F8HA 5L47A 2PH9A 2YKSA 2WNLA 4X5TA 3LSVA 4IL9A 3TLTA 5KE4A 5SYOA 2BYRA 2XQ5A 4QH4A 4ZK1A 2BR7A 2X00D 2XNUA 3PEOA 2BG9A 2XZ6A 1UX2A 3U8JA 3P50A 4AFHA 3SH1A 4HFIA 5L4EA 2XQ3A 2YN6A 4HFDA 5HEGA 1I9BA 3TLSA 4HFCA 2WN9A 5AFMA 4ZRUA 3WIPA 2W8FA 4XHEA 3WTIA 4FRRA 5JMEA 3IGQA 4QH1A 2UZ6A 4Z90A 3RHWA 3TLVA 2BYQA 3RQUA 3ZDGA 4AFTA 4UM3A 3UQ7A 2ZJVA 5LG3A 2ZJUA 3SIOA 3TLUA 4HFBA 3UU6A 3U8MA 3WTHA 4ILBA 4A97A 5AFNA 4ZK4A 2BG9E 2WNCA 5J5HA 2BG9B 4IREA 2WNJA 5BRXA 2Y54A 4LMKA 3GUAA 4UXUA 2YMEA 4ZJSA 3C79A 2BYPA 3UQ4A 4UM3P 4A98A 4WV9A 5HEOA 5IUXA 3UU3A 5AFMB 5AINA 4QABA 2PGZA 2Y7YA 3UU5A 2X00A 3U8LA 2BYNA 2XYTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XZ5 A;  4PIR A;  4ALX A;  3PMZ A;  4ZR6 A;  2XQ4 A;  3RIA A;  2QC1 B;  4NZB A;  3U8K A;  5AFH A;  4HFE A;  4QH5 A;  5J5G A;  3WTK A;  5BP0 A;  4ILA A;  3UU4 A;  4COF A;  4AFG A;  2BJ0 A;  2XQ8 A;  4NPP A;  4UY2 A;  2XNV A;  4LML A;  5LXB A;  3TLW A;  2C9T A;  5HCJ A;  5HEH A;  5KZU A;  4DBM A;  2XQ9 A;  5HEU A;  2YMD A;  1UV6 A;  4UM1 A;  2BG9 C;  3SQ9 A;  2Y58 A;  4ILC A;  5AFK A;  3UU8 A;  2XQA A;  3RQW A;  5FJV A;  2XNT A;  4HFH A;  2YOE A;  5L4H A;  4TWD A;  3ZDH A;  3ZKR A;  4ZZB A;  1UW6 A;  2BYS A;  4BQT A;  2BR8 A;  4QAA A;  4B5D A;  4D01 A;  3RI5 A;  5J0Z A;  2Y56 A;  3JAE A;  3WTL A;  4ZZC A;  4XK9 A;  3RIF A;  2XYS A;  2WZY A;  4UM3 S;  3WTO A;  5AFJ A;  4LMJ A;  5J5I A;  5TVC A;  4TNW A;  3WTN A;  3P4W A;  4IL4 A;  3JAF A;  3T4M A;  3C84 A;  4ZJT A;  4QAC A;  5CO5 A;  5J5F A;  4EZ1 A;  5HEJ A;  2XQ7 A;  3UUB A;  5AFL A;  3EI0 A;  3SQ6 A;  4BFQ A;  2VL0 A;  4TWF A;  5BW2 A;  3EHZ A;  3WTM A;  2Y57 A;  4HQP A;  3WTJ A;  3U8N A;  3EAM A;  4TNV A;  3JAD A;  2XQ6 A;  5HCM A;  2W8G A;  5CFB A;  4Z91 A;  4TWH A;  4F8H A;  5L47 A;  2PH9 A;  2YKS A;  2WNL A;  4X5T A;  3LSV A;  4IL9 A;  3TLT A;  5KE4 A;  5SYO A;  2BYR A;  2XQ5 A;  4QH4 A;  4ZK1 A;  2BR7 A;  2X00 D;  2XNU A;  3PEO A;  2BG9 A;  2XZ6 A;  1UX2 A;  3U8J A;  3P50 A;  4AFH A;  3SH1 A;  4HFI A;  5L4E A;  2XQ3 A;  2YN6 A;  4HFD A;  5HEG A;  1I9B A;  3TLS A;  4HFC A;  2WN9 A;  5AFM A;  4ZRU A;  3WIP A;  2W8F A;  4XHE A;  3WTI A;  4FRR A;  5JME A;  3IGQ A;  4QH1 A;  2UZ6 A;  4Z90 A;  3RHW A;  3TLV A;  2BYQ A;  3RQU A;  3ZDG A;  4AFT A;  4UM3 A;  3UQ7 A;  2ZJV A;  5LG3 A;  2ZJU A;  3SIO A;  3TLU A;  4HFB A;  3UU6 A;  3U8M A;  3WTH A;  4ILB A;  4A97 A;  5AFN A;  4ZK4 A;  2BG9 E;  2WNC A;  5J5H A;  2BG9 B;  4IRE A;  2WNJ A;  5BRX A;  2Y54 A;  4LMK A;  3GUA A;  4UXU A;  2YME A;  4ZJS A;  3C79 A;  2BYP A;  3UQ4 A;  4UM3 P;  4A98 A;  4WV9 A;  5HEO A;  5IUX A;  3UU3 A;  5AFM B;  5AIN A;  4QAB A;  2PGZ A;  2Y7Y A;  3UU5 A;  2X00 A;  3U8L A;  2BYN A;  2XYT A; 
#chains in the Genus database with same CATH topology
 2XZ5 A;  4PIR A;  4ALX A;  3PMZ A;  4ZR6 A;  2XQ4 A;  3RIA A;  2QC1 B;  4NZB A;  3U8K A;  5AFH A;  4HFE A;  4QH5 A;  5J5G A;  3WTK A;  5BP0 A;  4ILA A;  3UU4 A;  4COF A;  4AFG A;  2BJ0 A;  2XQ8 A;  4NPP A;  4UY2 A;  2XNV A;  4LML A;  5LXB A;  3TLW A;  2C9T A;  5HCJ A;  5HEH A;  5KZU A;  4DBM A;  2XQ9 A;  5HEU A;  2YMD A;  1UV6 A;  4UM1 A;  2BG9 C;  3SQ9 A;  2Y58 A;  4ILC A;  5AFK A;  3UU8 A;  2XQA A;  3RQW A;  5FJV A;  2XNT A;  4HFH A;  2YOE A;  5L4H A;  4TWD A;  3ZDH A;  3ZKR A;  4ZZB A;  1UW6 A;  2BYS A;  4BQT A;  2BR8 A;  4QAA A;  4B5D A;  4D01 A;  3RI5 A;  5J0Z A;  2Y56 A;  3JAE A;  3WTL A;  4ZZC A;  4XK9 A;  3RIF A;  2XYS A;  2WZY A;  4UM3 S;  3WTO A;  5AFJ A;  4LMJ A;  5J5I A;  5TVC A;  4TNW A;  3WTN A;  3P4W A;  4IL4 A;  3JAF A;  3T4M A;  3C84 A;  4ZJT A;  4QAC A;  5CO5 A;  5J5F A;  4EZ1 A;  5HEJ A;  2XQ7 A;  3UUB A;  5AFL A;  3EI0 A;  3SQ6 A;  4BFQ A;  2VL0 A;  4TWF A;  5BW2 A;  3EHZ A;  3WTM A;  2Y57 A;  4HQP A;  3WTJ A;  3U8N A;  3EAM A;  4TNV A;  3JAD A;  2XQ6 A;  5HCM A;  2W8G A;  5CFB A;  4Z91 A;  4TWH A;  4F8H A;  5L47 A;  2PH9 A;  2YKS A;  2WNL A;  4X5T A;  3LSV A;  4IL9 A;  3TLT A;  5KE4 A;  5SYO A;  2BYR A;  2XQ5 A;  4QH4 A;  4ZK1 A;  2BR7 A;  2X00 D;  2XNU A;  3PEO A;  2BG9 A;  2XZ6 A;  1UX2 A;  3U8J A;  3P50 A;  4AFH A;  3SH1 A;  4HFI A;  5L4E A;  2XQ3 A;  2YN6 A;  4HFD A;  5HEG A;  1I9B A;  3TLS A;  4HFC A;  2WN9 A;  5AFM A;  4ZRU A;  3WIP A;  2W8F A;  4XHE A;  3WTI A;  4FRR A;  5JME A;  3IGQ A;  4QH1 A;  2UZ6 A;  4Z90 A;  3RHW A;  3TLV A;  2BYQ A;  3RQU A;  3ZDG A;  4AFT A;  4UM3 A;  3UQ7 A;  2ZJV A;  5LG3 A;  2ZJU A;  3SIO A;  3TLU A;  4HFB A;  3UU6 A;  3U8M A;  3WTH A;  4ILB A;  4A97 A;  5AFN A;  4ZK4 A;  2BG9 E;  2WNC A;  5J5H A;  2BG9 B;  4IRE A;  2WNJ A;  5BRX A;  2Y54 A;  4LMK A;  3GUA A;  4UXU A;  2YME A;  4ZJS A;  3C79 A;  2BYP A;  3UQ4 A;  4UM3 P;  4A98 A;  4WV9 A;  5HEO A;  5IUX A;  3UU3 A;  5AFM B;  5AIN A;  4QAB A;  2PGZ A;  2Y7Y A;  3UU5 A;  2X00 A;  3U8L A;  2BYN A;  2XYT A; 
#chains in the Genus database with same CATH homology
 2XZ5 A;  4PIR A;  4ALX A;  3PMZ A;  4ZR6 A;  2XQ4 A;  3RIA A;  2QC1 B;  4NZB A;  3U8K A;  5AFH A;  4HFE A;  4QH5 A;  5J5G A;  3WTK A;  5BP0 A;  4ILA A;  3UU4 A;  4COF A;  4AFG A;  2BJ0 A;  2XQ8 A;  4NPP A;  4UY2 A;  2XNV A;  4LML A;  5LXB A;  3TLW A;  2C9T A;  5HCJ A;  5HEH A;  5KZU A;  4DBM A;  2XQ9 A;  5HEU A;  2YMD A;  1UV6 A;  4UM1 A;  2BG9 C;  3SQ9 A;  2Y58 A;  4ILC A;  5AFK A;  3UU8 A;  2XQA A;  3RQW A;  5FJV A;  2XNT A;  4HFH A;  2YOE A;  5L4H A;  4TWD A;  3ZDH A;  3ZKR A;  4ZZB A;  1UW6 A;  2BYS A;  4BQT A;  2BR8 A;  4QAA A;  4B5D A;  4D01 A;  3RI5 A;  5J0Z A;  2Y56 A;  3JAE A;  3WTL A;  4ZZC A;  4XK9 A;  3RIF A;  2XYS A;  2WZY A;  4UM3 S;  3WTO A;  5AFJ A;  4LMJ A;  5J5I A;  5TVC A;  4TNW A;  3WTN A;  3P4W A;  4IL4 A;  3JAF A;  3T4M A;  3C84 A;  4ZJT A;  4QAC A;  5CO5 A;  5J5F A;  4EZ1 A;  5HEJ A;  2XQ7 A;  3UUB A;  5AFL A;  3EI0 A;  3SQ6 A;  4BFQ A;  2VL0 A;  4TWF A;  5BW2 A;  3EHZ A;  3WTM A;  2Y57 A;  4HQP A;  3WTJ A;  3U8N A;  3EAM A;  4TNV A;  3JAD A;  2XQ6 A;  5HCM A;  2W8G A;  5CFB A;  4Z91 A;  4TWH A;  4F8H A;  5L47 A;  2PH9 A;  2YKS A;  2WNL A;  4X5T A;  3LSV A;  4IL9 A;  3TLT A;  5KE4 A;  5SYO A;  2BYR A;  2XQ5 A;  4QH4 A;  4ZK1 A;  2BR7 A;  2X00 D;  2XNU A;  3PEO A;  2BG9 A;  2XZ6 A;  1UX2 A;  3U8J A;  3P50 A;  4AFH A;  3SH1 A;  4HFI A;  5L4E A;  2XQ3 A;  2YN6 A;  4HFD A;  5HEG A;  1I9B A;  3TLS A;  4HFC A;  2WN9 A;  5AFM A;  4ZRU A;  3WIP A;  2W8F A;  4XHE A;  3WTI A;  4FRR A;  5JME A;  3IGQ A;  4QH1 A;  2UZ6 A;  4Z90 A;  3RHW A;  3TLV A;  2BYQ A;  3RQU A;  3ZDG A;  4AFT A;  4UM3 A;  3UQ7 A;  2ZJV A;  5LG3 A;  2ZJU A;  3SIO A;  3TLU A;  4HFB A;  3UU6 A;  3U8M A;  3WTH A;  4ILB A;  4A97 A;  5AFN A;  4ZK4 A;  2BG9 E;  2WNC A;  5J5H A;  2BG9 B;  4IRE A;  2WNJ A;  5BRX A;  2Y54 A;  4LMK A;  3GUA A;  4UXU A;  2YME A;  4ZJS A;  3C79 A;  2BYP A;  3UQ4 A;  4UM3 P;  4A98 A;  4WV9 A;  5HEO A;  5IUX A;  3UU3 A;  5AFM B;  5AIN A;  4QAB A;  2PGZ A;  2Y7Y A;  3UU5 A;  2X00 A;  3U8L A;  2BYN A;  2XYT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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