5T1OA

Solution-state nmr and saxs structural ensemble of npr (1-85) in complex with ein-ntr (170-424)
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
85
structure length
85
Chain Sequence
MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEAEANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Phosphocarrier protein NPr
publication title Structure of the NPr:EIN(Ntr) Complex: Mechanism for Specificity in Paralogous Phosphotransferase Systems.
pubmed doi rcsb
source organism Escherichia coli o157:h7
total genus 17
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2016-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00381 PTS-HPr PTS HPr component phosphorylation site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1340.10 Alpha Beta 2-Layer Sandwich Histidine-containing Protein; Chain: A; HPr-like 5t1oA00
3LE5A 3LE3A 5T1NA 3CCDA 1ZVVJ 1FU0A 1CM3A 3LE1A 1PTFA 1Y4YA 2FEPS 2HIDA 4XWJB 2XDFC 1OPDA 1PFHA 1MO1B 1HDNA 1Y50A 1GGRB 1JEMA 3EZEB 2AK7A 2NZVL 3OQMD 3EZAB 1QFRA 1RZRL 2LRLD 1J6TB 5T17A 1CM2A 1TXEA 1KA5A 3LNWA 2OENL 2HPRA 1MO1A 2JELP 5T1OA 1VRCC 2LRKD 1QR5A 2NZUL 3OQOD 3IHSA 1PCHA 1KKLH 3OQND 3EZBB 1K1CA 3LFGA 1MU4A 1POHA 1SPHA 2RLZA 1KKMH 1Y51A
chains in the Genus database with same CATH superfamily
3LE5A 3LE3A 5T1NA 3CCDA 1J5YA 1FU0A 1ZVVJ 1CM3A 3LE1A 1PTFA 1Y4YA 2FEPS 2HIDA 4XWJB 2XDFC 1OPDA 1PFHA 1MO1B 1HDNA 1Y50A 1GGRB 1JEMA 3EZEB 2AK7A 2NZVL 3OQMD 3EZAB 1QFRA 1RZRL 2LRLD 1J6TB 5T17A 1CM2A 1TXEA 1KA5A 3LNWA 2OENL 2HPRA 1MO1A 2JELP 5T1OA 1VRCC 2LRKD 1QR5A 2NZUL 3OQOD 3IHSA 1PCHA 1KKLH 3OQND 3EZBB 1K1CA 3LFGA 1MU4A 1POHA 1SPHA 2RLZA 1KKMH 1Y51A
chains in the Genus database with same CATH topology
3LE5A 3LE3A 5T1NA 3CCDA 1ZVVJ 1FU0A 1CM3A 3LE1A 1PTFA 1Y4YA 2FEPS 2HIDA 4XWJB 2XDFC 1OPDA 1PFHA 1MO1B 1HDNA 1Y50A 1GGRB 1JEMA 3EZEB 2AK7A 2NZVL 3OQMD 3EZAB 1QFRA 1RZRL 2LRLD 1J6TB 5T17A 1CM2A 1TXEA 1KA5A 3LNWA 2OENL 2HPRA 1MO1A 2JELP 5T1OA 1VRCC 2LRKD 1QR5A 2NZUL 3OQOD 3IHSA 1PCHA 1KKLH 3OQND 3EZBB 1K1CA 3LFGA 1MU4A 1POHA 1SPHA 2RLZA 1KKMH 1Y51A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LE5 A;  3LE3 A;  5T1N A;  3CCD A;  1ZVV J;  1FU0 A;  1CM3 A;  3LE1 A;  1PTF A;  1Y4Y A;  2FEP S;  2HID A;  4XWJ B;  2XDF C;  1OPD A;  1PFH A;  1MO1 B;  1HDN A;  1Y50 A;  1GGR B;  1JEM A;  3EZE B;  2AK7 A;  2NZV L;  3OQM D;  3EZA B;  1QFR A;  1RZR L;  2LRL D;  1J6T B;  5T17 A;  1CM2 A;  1TXE A;  1KA5 A;  3LNW A;  2OEN L;  2HPR A;  1MO1 A;  2JEL P;  5T1O A;  1VRC C;  2LRK D;  1QR5 A;  2NZU L;  3OQO D;  3IHS A;  1PCH A;  1KKL H;  3OQN D;  3EZB B;  1K1C A;  3LFG A;  1MU4 A;  1POH A;  1SPH A;  2RLZ A;  1KKM H;  1Y51 A; 
#chains in the Genus database with same CATH topology
 3LE5 A;  3LE3 A;  5T1N A;  3CCD A;  1J5Y A;  1FU0 A;  1ZVV J;  1CM3 A;  3LE1 A;  1PTF A;  1Y4Y A;  2FEP S;  2HID A;  4XWJ B;  2XDF C;  1OPD A;  1PFH A;  1MO1 B;  1HDN A;  1Y50 A;  1GGR B;  1JEM A;  3EZE B;  2AK7 A;  2NZV L;  3OQM D;  3EZA B;  1QFR A;  1RZR L;  2LRL D;  1J6T B;  5T17 A;  1CM2 A;  1TXE A;  1KA5 A;  3LNW A;  2OEN L;  2HPR A;  1MO1 A;  2JEL P;  5T1O A;  1VRC C;  2LRK D;  1QR5 A;  2NZU L;  3OQO D;  3IHS A;  1PCH A;  1KKL H;  3OQN D;  3EZB B;  1K1C A;  3LFG A;  1MU4 A;  1POH A;  1SPH A;  2RLZ A;  1KKM H;  1Y51 A; 
#chains in the Genus database with same CATH homology
 3LE5 A;  3LE3 A;  5T1N A;  3CCD A;  1ZVV J;  1FU0 A;  1CM3 A;  3LE1 A;  1PTF A;  1Y4Y A;  2FEP S;  2HID A;  4XWJ B;  2XDF C;  1OPD A;  1PFH A;  1MO1 B;  1HDN A;  1Y50 A;  1GGR B;  1JEM A;  3EZE B;  2AK7 A;  2NZV L;  3OQM D;  3EZA B;  1QFR A;  1RZR L;  2LRL D;  1J6T B;  5T17 A;  1CM2 A;  1TXE A;  1KA5 A;  3LNW A;  2OEN L;  2HPR A;  1MO1 A;  2JEL P;  5T1O A;  1VRC C;  2LRK D;  1QR5 A;  2NZU L;  3OQO D;  3IHS A;  1PCH A;  1KKL H;  3OQN D;  3EZB B;  1K1C A;  3LFG A;  1MU4 A;  1POH A;  1SPH A;  2RLZ A;  1KKM H;  1Y51 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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