5TK7A

Structure of the hd-domain phosphohydrolase oxsa with oxetanocin-a triphosphate bound
Total Genus 71
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
191
structure length
191
Chain Sequence
SSLLDIIYQLRQVPRWDGSFQFEKEDVSQHSFSVIAISHILCELKETLEGKKINKEKLLLYALYHDVTEVVSTHIISPVKKNSILKDPFNAFREQIKNSLFDNLPITLSDTLSTILNNNDLEIQEIVEHADHVDAYCKSCIEVHRGNKDFISIQRSLGDKLDNLTKEYPYLKEFQNLFLKDFPLENKNYRY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Metal binding protein
molecule keywords OxsA protein
publication title An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis.
pubmed doi rcsb
source organism Bacillus megaterium
total genus 71
structure length 191
sequence length 191
ec nomenclature
pdb deposition date 2016-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 5tk7A00
4RXRA 4ME4A 2HEKA 1YNBA 3KH1A 3CCGA 4MDZA 4L1JB 4TO3A 3I7AA 4Q7HA 5AO3A 3TMDA 1VJ7A 2OGIA 4RXPA 5TKAA 2PAUA 4R8ZA 4TNRA 3NQWA 2CQZA 4BZCA 5TK7A 3M1TA 4QG0A 3HC1A 1U6ZA 4RXSA 4X9EA 5AO1A 2O08A 4MLMA 1VQRA 2PARA 4MZ7A 4TNZA 4RXQA 3IRHA 3NR1A 4MLNA 3HI0A 3U1NA 2DQBA 4TO5A 4TO1A 5AO2A 3MEMA 4QFXA 3MZOA 5TK6A 4BZBA 4QFZA 1XX7A 4TO0A 4MCWA 5AO0A 4QG1A 4TO4A 2FLOA 1YOYA 4TNYA 4RXOA 4DMBA 4QG4A 4XDSA 5TK9A 4QG2A 4N71A 3LJXA 5AO4A 4ZWEA 3TM8A 2PGSA 2PAQA 4ZWGA 4TO6A 4L7WA 4TNPA 4L7EA 3TMBA 4TO2A 4TNQA 4TNXA 3RF0A 4L1JA 3TMCA 2Q14A 2O6IA 3BG2A 2GZ4A 4QFYA 5TK8A 4LRLA 4N6WA 2PQ7A 3P3QA
chains in the Genus database with same CATH superfamily
4RXRA 4ME4A 4QQYA 2HEKA 4QQWA 1YNBA 3KH1A 3CCGA 4MDZA 4L1JB 4TO3A 3I7AA 4Q7HA 5AO3A 3GW7A 3TMDA 3S4LA 1VJ7A 2OGIA 3SK9A 4RXPA 5TKAA 2PAUA 4R8ZA 4TNRA 3NQWA 2CQZA 4BZCA 5TK7A 3M1TA 4QG0A 3HC1A 1U6ZA 4RXSA 4Q2DA 5AO1A 2O08A 4MLMA 4X9EA 1VQRA 2PARA 4MZ7A 4TNZA 4RXQA 3IRHA 4Q2CA 3NR1A 4MLNA 3HI0A 3U1NA 2DQBA 4TO5A 4TO1A 3KQ5A 5AO2A 4QQZA 3SKDA 3MEMA 4QFXA 3MZOA 5TK6A 4BZBA 4QQXA 4QFZA 1XX7A 4TO0A 4MCWA 5AO0A 4QG1A 4TO4A 2FLOA 1YOYA 4TNYA 4RXOA 4DMBA 4QG4A 4XDSA 5TK9A 4QG2A 4N71A 3LJXA 5AO4A 4ZWEA 3TM8A 2PGSA 2PAQA 4ZWGA 4TO6A 4L7WA 4TNPA 4L7EA 3TMBA 4TO2A 4TNQA 4TNXA 3RF0A 4L1JA 3TMCA 2Q14A 2O6IA 3BG2A 2GZ4A 4QFYA 5TK8A 4LRLA 4N6WA 2PQ7A 3P3QA
chains in the Genus database with same CATH topology
4RXRA 4ME4A 4QQYA 2HEKA 4QQWA 1YNBA 3KH1A 3CCGA 4MDZA 4L1JB 4TO3A 3I7AA 4Q7HA 5AO3A 3GW7A 3TMDA 3S4LA 1VJ7A 2OGIA 3SK9A 4RXPA 5TKAA 2PAUA 4R8ZA 4TNRA 3NQWA 2CQZA 4BZCA 5TK7A 3M1TA 4QG0A 3HC1A 1U6ZA 4RXSA 4Q2DA 5AO1A 2O08A 4MLMA 4X9EA 1VQRA 2PARA 4MZ7A 4TNZA 4RXQA 3IRHA 4Q2CA 3NR1A 4MLNA 3HI0A 3U1NA 2DQBA 4TO5A 4TO1A 3KQ5A 5AO2A 4QQZA 3SKDA 3MEMA 4QFXA 3MZOA 5TK6A 4BZBA 4QQXA 4QFZA 1XX7A 4TO0A 4MCWA 5AO0A 4QG1A 4TO4A 2FLOA 1YOYA 4TNYA 4RXOA 4DMBA 4QG4A 4XDSA 5TK9A 4QG2A 4N71A 3LJXA 5AO4A 4ZWEA 3TM8A 2PGSA 2PAQA 4ZWGA 4TO6A 4L7WA 4TNPA 4L7EA 3TMBA 4TO2A 4TNQA 4TNXA 3RF0A 4L1JA 3TMCA 2Q14A 2O6IA 3BG2A 2GZ4A 4QFYA 5TK8A 4LRLA 4N6WA 2PQ7A 3P3QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RXR A;  4ME4 A;  2HEK A;  1YNB A;  3KH1 A;  3CCG A;  4MDZ A;  4L1J B;  4TO3 A;  3I7A A;  4Q7H A;  5AO3 A;  3TMD A;  1VJ7 A;  2OGI A;  4RXP A;  5TKA A;  2PAU A;  4R8Z A;  4TNR A;  3NQW A;  2CQZ A;  4BZC A;  5TK7 A;  3M1T A;  4QG0 A;  3HC1 A;  1U6Z A;  4RXS A;  4X9E A;  5AO1 A;  2O08 A;  4MLM A;  1VQR A;  2PAR A;  4MZ7 A;  4TNZ A;  4RXQ A;  3IRH A;  3NR1 A;  4MLN A;  3HI0 A;  3U1N A;  2DQB A;  4TO5 A;  4TO1 A;  5AO2 A;  3MEM A;  4QFX A;  3MZO A;  5TK6 A;  4BZB A;  4QFZ A;  1XX7 A;  4TO0 A;  4MCW A;  5AO0 A;  4QG1 A;  4TO4 A;  2FLO A;  1YOY A;  4TNY A;  4RXO A;  4DMB A;  4QG4 A;  4XDS A;  5TK9 A;  4QG2 A;  4N71 A;  3LJX A;  5AO4 A;  4ZWE A;  3TM8 A;  2PGS A;  2PAQ A;  4ZWG A;  4TO6 A;  4L7W A;  4TNP A;  4L7E A;  3TMB A;  4TO2 A;  4TNQ A;  4TNX A;  3RF0 A;  4L1J A;  3TMC A;  2Q14 A;  2O6I A;  3BG2 A;  2GZ4 A;  4QFY A;  5TK8 A;  4LRL A;  4N6W A;  2PQ7 A;  3P3Q A; 
#chains in the Genus database with same CATH topology
 4RXR A;  4ME4 A;  4QQY A;  2HEK A;  4QQW A;  1YNB A;  3KH1 A;  3CCG A;  4MDZ A;  4L1J B;  4TO3 A;  3I7A A;  4Q7H A;  5AO3 A;  3GW7 A;  3TMD A;  3S4L A;  1VJ7 A;  2OGI A;  3SK9 A;  4RXP A;  5TKA A;  2PAU A;  4R8Z A;  4TNR A;  3NQW A;  2CQZ A;  4BZC A;  5TK7 A;  3M1T A;  4QG0 A;  3HC1 A;  1U6Z A;  4RXS A;  4Q2D A;  5AO1 A;  2O08 A;  4MLM A;  4X9E A;  1VQR A;  2PAR A;  4MZ7 A;  4TNZ A;  4RXQ A;  3IRH A;  4Q2C A;  3NR1 A;  4MLN A;  3HI0 A;  3U1N A;  2DQB A;  4TO5 A;  4TO1 A;  3KQ5 A;  5AO2 A;  4QQZ A;  3SKD A;  3MEM A;  4QFX A;  3MZO A;  5TK6 A;  4BZB A;  4QQX A;  4QFZ A;  1XX7 A;  4TO0 A;  4MCW A;  5AO0 A;  4QG1 A;  4TO4 A;  2FLO A;  1YOY A;  4TNY A;  4RXO A;  4DMB A;  4QG4 A;  4XDS A;  5TK9 A;  4QG2 A;  4N71 A;  3LJX A;  5AO4 A;  4ZWE A;  3TM8 A;  2PGS A;  2PAQ A;  4ZWG A;  4TO6 A;  4L7W A;  4TNP A;  4L7E A;  3TMB A;  4TO2 A;  4TNQ A;  4TNX A;  3RF0 A;  4L1J A;  3TMC A;  2Q14 A;  2O6I A;  3BG2 A;  2GZ4 A;  4QFY A;  5TK8 A;  4LRL A;  4N6W A;  2PQ7 A;  3P3Q A; 
#chains in the Genus database with same CATH homology
 4RXR A;  4ME4 A;  4QQY A;  2HEK A;  4QQW A;  1YNB A;  3KH1 A;  3CCG A;  4MDZ A;  4L1J B;  4TO3 A;  3I7A A;  4Q7H A;  5AO3 A;  3GW7 A;  3TMD A;  3S4L A;  1VJ7 A;  2OGI A;  3SK9 A;  4RXP A;  5TKA A;  2PAU A;  4R8Z A;  4TNR A;  3NQW A;  2CQZ A;  4BZC A;  5TK7 A;  3M1T A;  4QG0 A;  3HC1 A;  1U6Z A;  4RXS A;  4Q2D A;  5AO1 A;  2O08 A;  4MLM A;  4X9E A;  1VQR A;  2PAR A;  4MZ7 A;  4TNZ A;  4RXQ A;  3IRH A;  4Q2C A;  3NR1 A;  4MLN A;  3HI0 A;  3U1N A;  2DQB A;  4TO5 A;  4TO1 A;  3KQ5 A;  5AO2 A;  4QQZ A;  3SKD A;  3MEM A;  4QFX A;  3MZO A;  5TK6 A;  4BZB A;  4QQX A;  4QFZ A;  1XX7 A;  4TO0 A;  4MCW A;  5AO0 A;  4QG1 A;  4TO4 A;  2FLO A;  1YOY A;  4TNY A;  4RXO A;  4DMB A;  4QG4 A;  4XDS A;  5TK9 A;  4QG2 A;  4N71 A;  3LJX A;  5AO4 A;  4ZWE A;  3TM8 A;  2PGS A;  2PAQ A;  4ZWG A;  4TO6 A;  4L7W A;  4TNP A;  4L7E A;  3TMB A;  4TO2 A;  4TNQ A;  4TNX A;  3RF0 A;  4L1J A;  3TMC A;  2Q14 A;  2O6I A;  3BG2 A;  2GZ4 A;  4QFY A;  5TK8 A;  4LRL A;  4N6W A;  2PQ7 A;  3P3Q A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...