5TKAA

Structure of the hd-domain phosphohydrolase oxsa
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
189
structure length
167
Chain Sequence
SSLLDIIYQLRQVPRWDGSFQFEKEDVSQHSFSVIAISHILCELKETLEGKKINKEKLLLYALYHDVTEVVSTHKNSLFDNLPITLSDTLSTILNNNDLEIQEIVEHADHVDAYCKSCIEVHRGNKDFISIQRSLGDKLDNLTKEYPYLKEFQNLFLKDFPLENKNY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords OxsA protein
publication title An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis.
pubmed doi rcsb
source organism Bacillus megaterium
total genus 62
structure length 167
sequence length 189
ec nomenclature
pdb deposition date 2016-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 5tkaA00
4R8ZA 3KH1A 4TO4A 1YNBA 4QG4A 4TO0A 1VQRA 2PARA 1U6ZA 3TMCA 3HC1A 4QG1A 4QFXA 3HI0A 4TO1A 4ZWGA 4RXSA 4LRLA 3TM8A 4DMBA 4MLMA 3NR1A 5TK7A 4TO5A 2O08A 4ZWEA 4TNRA 4TO6A 4L7EA 4ME4A 5AO0A 2PQ7A 2O6IA 4TNZA 2PAUA 4BZBA 4RXQA 3TMDA 2CQZA 4X9EA 2PGSA 3M1TA 4N6WA 4QG2A 3TMBA 5AO3A 4MLNA 4TNPA 5TK6A 3LJXA 5TKAA 4QG0A 3RF0A 4TNXA 4QFZA 4BZCA 3MEMA 4TNYA 1YOYA 4RXRA 1XX7A 4L7WA 4MCWA 2GZ4A 5AO4A 2Q14A 4TO3A 2HEKA 4L1JA 3BG2A 3NQWA 4TNQA 4Q7HA 3CCGA 5AO2A 1VJ7A 3U1NA 3IRHA 3P3QA 5TK9A 4RXPA 5AO1A 4QFYA 4XDSA 2DQBA 2PAQA 3MZOA 3I7AA 2OGIA 4MDZA 4RXOA 4MZ7A 4N71A 2FLOA 4TO2A 5TK8A 4L1JB
chains in the Genus database with same CATH superfamily
4QQWA 4R8ZA 3KH1A 4TO4A 1YNBA 4QG4A 4TO0A 1VQRA 2PARA 1U6ZA 3TMCA 3HC1A 4QG1A 4QFXA 3HI0A 4TO1A 4ZWGA 4RXSA 4LRLA 3TM8A 4DMBA 4MLMA 3NR1A 5TK7A 4TO5A 2O08A 4ZWEA 4TNRA 4TO6A 4L7EA 4ME4A 5AO0A 2PQ7A 2O6IA 4TNZA 2PAUA 4BZBA 4RXQA 3TMDA 2CQZA 4X9EA 2PGSA 3M1TA 4N6WA 4QG2A 3TMBA 5AO3A 3S4LA 4MLNA 4QQYA 4TNPA 5TK6A 3LJXA 4Q2DA 5TKAA 4QG0A 3RF0A 4Q2CA 4QFZA 4TNXA 4BZCA 3MEMA 4TNYA 1YOYA 4RXRA 3SKDA 3KQ5A 1XX7A 4L7WA 4MCWA 2GZ4A 5AO4A 2Q14A 4TO3A 2HEKA 4L1JA 3SK9A 3BG2A 3NQWA 4TNQA 4QQZA 4Q7HA 3CCGA 1VJ7A 5AO2A 3GW7A 3U1NA 3IRHA 3P3QA 5TK9A 4RXPA 5AO1A 4QFYA 4QQXA 4XDSA 2DQBA 2PAQA 3MZOA 3I7AA 2OGIA 4MDZA 4RXOA 4MZ7A 4N71A 2FLOA 4TO2A 5TK8A 4L1JB
chains in the Genus database with same CATH topology
4QQWA 4R8ZA 3KH1A 4TO4A 1YNBA 4QG4A 4TO0A 1VQRA 2PARA 1U6ZA 3TMCA 3HC1A 4QG1A 4QFXA 3HI0A 4TO1A 4ZWGA 4RXSA 4LRLA 3TM8A 4DMBA 4MLMA 3NR1A 5TK7A 4TO5A 2O08A 4ZWEA 4TNRA 4TO6A 4L7EA 4ME4A 5AO0A 2PQ7A 2O6IA 4TNZA 2PAUA 4BZBA 4RXQA 3TMDA 2CQZA 4X9EA 2PGSA 3M1TA 4N6WA 4QG2A 3TMBA 5AO3A 3S4LA 4MLNA 4QQYA 4TNPA 5TK6A 3LJXA 4Q2DA 5TKAA 4QG0A 3RF0A 4Q2CA 4QFZA 4TNXA 4BZCA 3MEMA 4TNYA 1YOYA 4RXRA 3SKDA 3KQ5A 1XX7A 4L7WA 4MCWA 2GZ4A 5AO4A 2Q14A 4TO3A 2HEKA 4L1JA 3SK9A 3BG2A 3NQWA 4TNQA 4QQZA 4Q7HA 3CCGA 1VJ7A 5AO2A 3GW7A 3U1NA 3IRHA 3P3QA 5TK9A 4RXPA 5AO1A 4QFYA 4QQXA 4XDSA 2DQBA 2PAQA 3MZOA 3I7AA 2OGIA 4MDZA 4RXOA 4MZ7A 4N71A 2FLOA 4TO2A 5TK8A 4L1JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R8Z A;  3KH1 A;  4TO4 A;  1YNB A;  4QG4 A;  4TO0 A;  1VQR A;  2PAR A;  1U6Z A;  3TMC A;  3HC1 A;  4QG1 A;  4QFX A;  3HI0 A;  4TO1 A;  4ZWG A;  4RXS A;  4LRL A;  3TM8 A;  4DMB A;  4MLM A;  3NR1 A;  5TK7 A;  4TO5 A;  2O08 A;  4ZWE A;  4TNR A;  4TO6 A;  4L7E A;  4ME4 A;  5AO0 A;  2PQ7 A;  2O6I A;  4TNZ A;  2PAU A;  4BZB A;  4RXQ A;  3TMD A;  2CQZ A;  4X9E A;  2PGS A;  3M1T A;  4N6W A;  4QG2 A;  3TMB A;  5AO3 A;  4MLN A;  4TNP A;  5TK6 A;  3LJX A;  5TKA A;  4QG0 A;  3RF0 A;  4TNX A;  4QFZ A;  4BZC A;  3MEM A;  4TNY A;  1YOY A;  4RXR A;  1XX7 A;  4L7W A;  4MCW A;  2GZ4 A;  5AO4 A;  2Q14 A;  4TO3 A;  2HEK A;  4L1J A;  3BG2 A;  3NQW A;  4TNQ A;  4Q7H A;  3CCG A;  5AO2 A;  1VJ7 A;  3U1N A;  3IRH A;  3P3Q A;  5TK9 A;  4RXP A;  5AO1 A;  4QFY A;  4XDS A;  2DQB A;  2PAQ A;  3MZO A;  3I7A A;  2OGI A;  4MDZ A;  4RXO A;  4MZ7 A;  4N71 A;  2FLO A;  4TO2 A;  5TK8 A;  4L1J B; 
#chains in the Genus database with same CATH topology
 4QQW A;  4R8Z A;  3KH1 A;  4TO4 A;  1YNB A;  4QG4 A;  4TO0 A;  1VQR A;  2PAR A;  1U6Z A;  3TMC A;  3HC1 A;  4QG1 A;  4QFX A;  3HI0 A;  4TO1 A;  4ZWG A;  4RXS A;  4LRL A;  3TM8 A;  4DMB A;  4MLM A;  3NR1 A;  5TK7 A;  4TO5 A;  2O08 A;  4ZWE A;  4TNR A;  4TO6 A;  4L7E A;  4ME4 A;  5AO0 A;  2PQ7 A;  2O6I A;  4TNZ A;  2PAU A;  4BZB A;  4RXQ A;  3TMD A;  2CQZ A;  4X9E A;  2PGS A;  3M1T A;  4N6W A;  4QG2 A;  3TMB A;  5AO3 A;  3S4L A;  4MLN A;  4QQY A;  4TNP A;  5TK6 A;  3LJX A;  4Q2D A;  5TKA A;  4QG0 A;  3RF0 A;  4Q2C A;  4QFZ A;  4TNX A;  4BZC A;  3MEM A;  4TNY A;  1YOY A;  4RXR A;  3SKD A;  3KQ5 A;  1XX7 A;  4L7W A;  4MCW A;  2GZ4 A;  5AO4 A;  2Q14 A;  4TO3 A;  2HEK A;  4L1J A;  3SK9 A;  3BG2 A;  3NQW A;  4TNQ A;  4QQZ A;  4Q7H A;  3CCG A;  1VJ7 A;  5AO2 A;  3GW7 A;  3U1N A;  3IRH A;  3P3Q A;  5TK9 A;  4RXP A;  5AO1 A;  4QFY A;  4QQX A;  4XDS A;  2DQB A;  2PAQ A;  3MZO A;  3I7A A;  2OGI A;  4MDZ A;  4RXO A;  4MZ7 A;  4N71 A;  2FLO A;  4TO2 A;  5TK8 A;  4L1J B; 
#chains in the Genus database with same CATH homology
 4QQW A;  4R8Z A;  3KH1 A;  4TO4 A;  1YNB A;  4QG4 A;  4TO0 A;  1VQR A;  2PAR A;  1U6Z A;  3TMC A;  3HC1 A;  4QG1 A;  4QFX A;  3HI0 A;  4TO1 A;  4ZWG A;  4RXS A;  4LRL A;  3TM8 A;  4DMB A;  4MLM A;  3NR1 A;  5TK7 A;  4TO5 A;  2O08 A;  4ZWE A;  4TNR A;  4TO6 A;  4L7E A;  4ME4 A;  5AO0 A;  2PQ7 A;  2O6I A;  4TNZ A;  2PAU A;  4BZB A;  4RXQ A;  3TMD A;  2CQZ A;  4X9E A;  2PGS A;  3M1T A;  4N6W A;  4QG2 A;  3TMB A;  5AO3 A;  3S4L A;  4MLN A;  4QQY A;  4TNP A;  5TK6 A;  3LJX A;  4Q2D A;  5TKA A;  4QG0 A;  3RF0 A;  4Q2C A;  4QFZ A;  4TNX A;  4BZC A;  3MEM A;  4TNY A;  1YOY A;  4RXR A;  3SKD A;  3KQ5 A;  1XX7 A;  4L7W A;  4MCW A;  2GZ4 A;  5AO4 A;  2Q14 A;  4TO3 A;  2HEK A;  4L1J A;  3SK9 A;  3BG2 A;  3NQW A;  4TNQ A;  4QQZ A;  4Q7H A;  3CCG A;  1VJ7 A;  5AO2 A;  3GW7 A;  3U1N A;  3IRH A;  3P3Q A;  5TK9 A;  4RXP A;  5AO1 A;  4QFY A;  4QQX A;  4XDS A;  2DQB A;  2PAQ A;  3MZO A;  3I7A A;  2OGI A;  4MDZ A;  4RXO A;  4MZ7 A;  4N71 A;  2FLO A;  4TO2 A;  5TK8 A;  4L1J B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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