The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
219
|
sequence length |
684
|
structure length |
684
|
Chain Sequence |
TKTIVAAKRGTIYDRNGNVLAEDSTSYSIYAIVSTSYVSPTREKLYVQESQFDKVADILKDKLGIKKSYTLAQLRTKGAYQVSFGLKGKGITYSVKEDLEKTFKDAGIKGMAFEATTSRMYPNGTFASEFLGRAEPIENKKDGSYSLIGQTGLERSLNSLLTGTDGEAIYEKDKDGNTLLGTETITKEAIDGKNIYTTLSAPLQTFLETQMDTFMEQTKGINASATVVNAKTGEILATTQRPTYNSDTLEGQAKKGYDWVNRLYEAQYEPGSTMKVMLLSAAINNGSFNPNATYSNANGIKVGDVEINDWSINEGISKGRTMSFAQGFSYSSNVGMTMLEQAMGDKVWSNYLSLYKFGIPTRFGMVGESSGIVSQNSVNIAQSSFGQGISVTQVQMLRAFTAISNNGIMLEPQFIKQVADTNKGTVRTAKKEVIGKPVSKQAASETRNYMISVGTDPEFGTLYNKSEGSPIIQVGNNDVTVKSGTAQVPDEKTGTYKVGTNETLNSVVAMVPSEDPEYIMYVTVQEPKTWNNNFFATVVNPVLEEAMSMGATLDTSVSEGSGKTEETSYQTGDIIGKTPGETANTLRQNLVHPIVLGVGNKIEKVSVDAKENIKANEQILIMTNEFTELPDMYGWTKKNVETFAKWKGIKITYKGGKSGTVTKQSVAAGEALSKTKKITITLGD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
1.95 Angstrom Resolution Crystal Structure of Penicillin Binding Protein 2X from Streptococcus thermophilus.
rcsb |
| molecule tags |
Lipid binding protein
|
| source organism |
Streptococcus thermophilus (strain atcc baa-250 / lmg 18311)
|
| molecule keywords |
Penicillin binding protein 2X
|
| total genus |
219
|
| structure length |
684
|
| sequence length |
684
|
| ec nomenclature | |
| pdb deposition date | 2016-12-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00905 | Transpeptidase | Penicillin binding protein transpeptidase domain |
| A | PF03717 | PBP_dimer | Penicillin-binding Protein dimerisation domain |
| A | PF03793 | PASTA | PASTA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | Ubiquitin Ligase Nedd4; Chain: W; | Ubiquitin Ligase Nedd4; Chain: W; | ||
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Alpha-Beta Plaits | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | ||
| Alpha Beta | Alpha-Beta Complex | Penicillin-binding protein 2a (Domain 2) | Penicillin-binding protein 2a (Domain 2) |
