5AEUA

Crystal structure of ii9 variant of biphenyl dioxygenase from burkholderia xenovorans lb400
Total Genus 139
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
442
structure length
433
Chain Sequence
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPGINTIRTWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords BIPHENYL DIOXYGENASE SUBUNIT ALPHA
publication title Structural Basis of the Enhanced Pollutant-Degrading Capabilities of an Engineered Biphenyl Dioxygenase
pubmed doi rcsb
source organism Burkholderia xenovorans lb400
total genus 139
structure length 433
sequence length 442
chains with identical sequence C, E, G
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2015-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 5aeuA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 5aeuA01
3H1KE 3GCEA 1P84E 1O7WA 3GZYA 3CWBE 3H1LE 1PP9E 3BCCE 1G8JB 3AZCA 3GB4A 4H44D 4U3FE 4NBGA 2QJPC 1NDOA 3VMHA 1RFSA 4NBGD 3VMHD 2BCCE 3EQQA 1WW9A 2NVEA 3H1HE 1JM1A 2HMKA 3GTSA 5AEWA 4AIVA 2NUMA 4HM4A 2YFIA 1ULJA 2YIUC 5CXMA 3H1IE 4HM8A 1L0NE 2E76D 4NBFA 1SQXE 3GKQA 3GL0A 2BMRA 3DQYA 4HM3A 4NBFD 2FYNC 4QCKA 2B24A 4NBBA 4NBBD 5BOKA 2XRXA 1VM9A 4AAYB 3L75E 3VCPA 2QJKC 1FQTA 4P1BH 5KLVE 4HM5A 3L70E 1KYOE 2XSOA 2NUKA 1SQVE 4QDFB 3EN1A 2NVFA 1ZRTE 4HM7A 2DE6A 2DE6D 2QPZA 4QDDA 4NBCA 2JO6A 3L71E 4NBCD 3GOBA 3VMGA 2DE5A 4PD4E 3VMGD 3GKEA 1SQPE 2DE5D 2YFJA 4HKVA 1NYKA 4HJLA 2YVJB 2XSHA 3H1JE 2NVGA 4H13D 2E4PA 1UUWA 1EG9A 1Z02A 1G8KB 4OGQD 1Q90C 1O7GA 1O7HA 1SQQE 3TGUE 3VMIA 2E4QA 3VMID 3VCAA 3GCFA 4NBDA 4NB8A 1NTZE 1BCCE 4NBDD 4NB8D 1VF5D 2E74D 2ZYLA 1O7NA 5KLIC 1NTKE 2NWFA 2YFLA 4EMJB 4NBEA 4NB9A 4NB9D 4NBED 2I7FA 3GTEA 3N0QA 3GZXA 2HMNA 1VCKA 4QUQA 4QUPA 2B1XA 2XR8A 5AEUA 2D2CD 2JZAA 1EZVE 1ULIA 1O7PA 2DE7D 3L72E 1NU1E 2HMJA 2FYUE 1KB9E 2HMMA 2BMOA 3FOUA 1NTME 2HMLA 2GBWA 4HM2A 5HL4A 1BE3E 2ZT9D 2BMQA 2CKFA 1SQBE 1SJGA 3CX5E 2E75D 3C0DA 1Z03A 1RIEA 1WQLA 2Q3WA 4P1CH 4PV1D 4H0LD 1UUVA 1Z01A 4HM6A 4NBHA 3D89A 4NBHD 2QJYC 2A06E 3GL2A 4HM1A 2GBXA 1PPJE 4QDCA 4NBAA 4QURA 3CXHE 1O7MA 4NBAD 1L0LE 3L73E 3L74E 4HM0A 5KKZC 2IBZE 4QDFA 2HMOA 2DE7A
chains in the Genus database with same CATH superfamily
3H1KE 3GCEA 1P84E 1O7WA 3GZYA 3CWBE 3H1LE 1PP9E 3BCCE 1G8JB 3AZCA 3GB4A 4H44D 4U3FE 4NBGA 2QJPC 1NDOA 3VMHA 1RFSA 4NBGD 3VMHD 2BCCE 3EQQA 1WW9A 2NVEA 3H1HE 1JM1A 2HMKA 3GTSA 5AEWA 4AIVA 2NUMA 4HM4A 2YFIA 1ULJA 2YIUC 5CXMA 3H1IE 4HM8A 1L0NE 2E76D 4NBFA 1SQXE 3GKQA 3GL0A 2BMRA 3DQYA 4HM3A 4NBFD 2FYNC 4QCKA 2B24A 4NBBA 4NBBD 5BOKA 2XRXA 1VM9A 4AAYB 3L75E 3VCPA 2QJKC 1FQTA 4P1BH 5KLVE 4HM5A 3L70E 1KYOE 2XSOA 2NUKA 1SQVE 4QDFB 3EN1A 2NVFA 1ZRTE 4HM7A 2DE6A 2DE6D 2QPZA 4QDDA 4NBCA 2JO6A 3L71E 4NBCD 3GOBA 3VMGA 2DE5A 4PD4E 3VMGD 3GKEA 1SQPE 2DE5D 2YFJA 4HKVA 1NYKA 4HJLA 2YVJB 2XSHA 3H1JE 2NVGA 4H13D 2E4PA 1UUWA 1EG9A 1Z02A 1G8KB 4OGQD 1Q90C 1O7GA 1O7HA 1SQQE 3TGUE 3VMIA 2E4QA 3VMID 3VCAA 3GCFA 4NBDA 4NB8A 1NTZE 1BCCE 4NBDD 4NB8D 1VF5D 2E74D 2ZYLA 1O7NA 5KLIC 1NTKE 2NWFA 2YFLA 4EMJB 4NBEA 4NB9A 4NB9D 4NBED 2I7FA 3GTEA 3N0QA 3GZXA 2HMNA 1VCKA 4QUQA 4QUPA 2B1XA 2XR8A 5AEUA 2D2CD 2JZAA 1EZVE 1ULIA 1O7PA 2DE7D 3L72E 1NU1E 2HMJA 2FYUE 1KB9E 2HMMA 2BMOA 3FOUA 1NTME 2HMLA 2GBWA 4HM2A 5HL4A 1BE3E 2ZT9D 2BMQA 2CKFA 1SQBE 1SJGA 3CX5E 2E75D 3C0DA 1Z03A 1RIEA 1WQLA 2Q3WA 4P1CH 4PV1D 4H0LD 1UUVA 1Z01A 4HM6A 4NBHA 3D89A 4NBHD 2QJYC 2A06E 3GL2A 4HM1A 2GBXA 1PPJE 4QDCA 4NBAA 4QURA 3CXHE 1O7MA 4NBAD 1L0LE 3L73E 3L74E 4HM0A 5KKZC 2IBZE 4QDFA 2HMOA 2DE7A
chains in the Genus database with same CATH topology
3H1KE 3GCEA 1P84E 1O7WA 3GZYA 3CWBE 3H1LE 1PP9E 3BCCE 1G8JB 3AZCA 3GB4A 4H44D 4U3FE 4NBGA 2QJPC 1NDOA 3VMHA 1RFSA 4NBGD 3VMHD 2BCCE 3EQQA 1WW9A 2NVEA 3H1HE 1JM1A 2HMKA 3GTSA 5AEWA 4AIVA 2NUMA 4HM4A 2YFIA 1ULJA 2YIUC 5CXMA 3H1IE 4HM8A 1L0NE 2E76D 4NBFA 1SQXE 3GKQA 3GL0A 2BMRA 3DQYA 4HM3A 4NBFD 2FYNC 4QCKA 2B24A 4NBBA 4NBBD 5BOKA 2XRXA 1VM9A 4AAYB 3L75E 3VCPA 2QJKC 1FQTA 4P1BH 5KLVE 4HM5A 3L70E 1KYOE 2XSOA 2NUKA 1SQVE 4QDFB 3EN1A 2NVFA 1ZRTE 4HM7A 2DE6A 2DE6D 2QPZA 4QDDA 4NBCA 2JO6A 3L71E 4NBCD 3GOBA 3VMGA 2DE5A 4PD4E 3VMGD 3GKEA 1SQPE 2DE5D 2YFJA 4HKVA 1NYKA 4HJLA 2YVJB 2XSHA 3H1JE 2NVGA 4H13D 2E4PA 1UUWA 1EG9A 1Z02A 1G8KB 4OGQD 1Q90C 1O7GA 1O7HA 1SQQE 3TGUE 3VMIA 2E4QA 3VMID 3VCAA 3GCFA 4NBDA 4NB8A 1NTZE 1BCCE 4NBDD 4NB8D 1VF5D 2E74D 2ZYLA 1O7NA 5KLIC 1NTKE 2NWFA 2YFLA 4EMJB 4NBEA 4NB9A 4NB9D 4NBED 2I7FA 3GTEA 3N0QA 3GZXA 2HMNA 1VCKA 4QUQA 4QUPA 2B1XA 2XR8A 5AEUA 2D2CD 2JZAA 1EZVE 1ULIA 1O7PA 2DE7D 3L72E 1NU1E 2HMJA 2FYUE 1KB9E 2HMMA 2BMOA 3FOUA 1NTME 2HMLA 2GBWA 4HM2A 5HL4A 1BE3E 2ZT9D 2BMQA 2CKFA 1SQBE 1SJGA 3CX5E 2E75D 3C0DA 1Z03A 1RIEA 1WQLA 2Q3WA 4P1CH 4PV1D 4H0LD 1UUVA 1Z01A 4HM6A 4NBHA 3D89A 4NBHD 2QJYC 2A06E 3GL2A 4HM1A 2GBXA 1PPJE 4QDCA 4NBAA 4QURA 3CXHE 1O7MA 4NBAD 1L0LE 3L73E 3L74E 4HM0A 5KKZC 2IBZE 4QDFA 2HMOA 2DE7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H1K E;  3GCE A;  1P84 E;  1O7W A;  3GZY A;  3CWB E;  3H1L E;  1PP9 E;  3BCC E;  1G8J B;  3AZC A;  3GB4 A;  4H44 D;  4U3F E;  4NBG A;  2QJP C;  1NDO A;  3VMH A;  1RFS A;  4NBG D;  3VMH D;  2BCC E;  3EQQ A;  1WW9 A;  2NVE A;  3H1H E;  1JM1 A;  2HMK A;  3GTS A;  5AEW A;  4AIV A;  2NUM A;  4HM4 A;  2YFI A;  1ULJ A;  2YIU C;  5CXM A;  3H1I E;  4HM8 A;  1L0N E;  2E76 D;  4NBF A;  1SQX E;  3GKQ A;  3GL0 A;  2BMR A;  3DQY A;  4HM3 A;  4NBF D;  2FYN C;  4QCK A;  2B24 A;  4NBB A;  4NBB D;  5BOK A;  2XRX A;  1VM9 A;  4AAY B;  3L75 E;  3VCP A;  2QJK C;  1FQT A;  4P1B H;  5KLV E;  4HM5 A;  3L70 E;  1KYO E;  2XSO A;  2NUK A;  1SQV E;  4QDF B;  3EN1 A;  2NVF A;  1ZRT E;  4HM7 A;  2DE6 A;  2DE6 D;  2QPZ A;  4QDD A;  4NBC A;  2JO6 A;  3L71 E;  4NBC D;  3GOB A;  3VMG A;  2DE5 A;  4PD4 E;  3VMG D;  3GKE A;  1SQP E;  2DE5 D;  2YFJ A;  4HKV A;  1NYK A;  4HJL A;  2YVJ B;  2XSH A;  3H1J E;  2NVG A;  4H13 D;  2E4P A;  1UUW A;  1EG9 A;  1Z02 A;  1G8K B;  4OGQ D;  1Q90 C;  1O7G A;  1O7H A;  1SQQ E;  3TGU E;  3VMI A;  2E4Q A;  3VMI D;  3VCA A;  3GCF A;  4NBD A;  4NB8 A;  1NTZ E;  1BCC E;  4NBD D;  4NB8 D;  1VF5 D;  2E74 D;  2ZYL A;  1O7N A;  5KLI C;  1NTK E;  2NWF A;  2YFL A;  4EMJ B;  4NBE A;  4NB9 A;  4NB9 D;  4NBE D;  2I7F A;  3GTE A;  3N0Q A;  3GZX A;  2HMN A;  1VCK A;  4QUQ A;  4QUP A;  2B1X A;  2XR8 A;  5AEU A;  2D2C D;  2JZA A;  1EZV E;  1ULI A;  1O7P A;  2DE7 D;  3L72 E;  1NU1 E;  2HMJ A;  2FYU E;  1KB9 E;  2HMM A;  2BMO A;  3FOU A;  1NTM E;  2HML A;  2GBW A;  4HM2 A;  5HL4 A;  1BE3 E;  2ZT9 D;  2BMQ A;  2CKF A;  1SQB E;  1SJG A;  3CX5 E;  2E75 D;  3C0D A;  1Z03 A;  1RIE A;  1WQL A;  2Q3W A;  4P1C H;  4PV1 D;  4H0L D;  1UUV A;  1Z01 A;  4HM6 A;  4NBH A;  3D89 A;  4NBH D;  2QJY C;  2A06 E;  3GL2 A;  4HM1 A;  2GBX A;  1PPJ E;  4QDC A;  4NBA A;  4QUR A;  3CXH E;  1O7M A;  4NBA D;  1L0L E;  3L73 E;  3L74 E;  4HM0 A;  5KKZ C;  2IBZ E;  4QDF A;  2HMO A;  2DE7 A; 
#chains in the Genus database with same CATH topology
 3H1K E;  3GCE A;  1P84 E;  1O7W A;  3GZY A;  3CWB E;  3H1L E;  1PP9 E;  3BCC E;  1G8J B;  3AZC A;  3GB4 A;  4H44 D;  4U3F E;  4NBG A;  2QJP C;  1NDO A;  3VMH A;  1RFS A;  4NBG D;  3VMH D;  2BCC E;  3EQQ A;  1WW9 A;  2NVE A;  3H1H E;  1JM1 A;  2HMK A;  3GTS A;  5AEW A;  4AIV A;  2NUM A;  4HM4 A;  2YFI A;  1ULJ A;  2YIU C;  5CXM A;  3H1I E;  4HM8 A;  1L0N E;  2E76 D;  4NBF A;  1SQX E;  3GKQ A;  3GL0 A;  2BMR A;  3DQY A;  4HM3 A;  4NBF D;  2FYN C;  4QCK A;  2B24 A;  4NBB A;  4NBB D;  5BOK A;  2XRX A;  1VM9 A;  4AAY B;  3L75 E;  3VCP A;  2QJK C;  1FQT A;  4P1B H;  5KLV E;  4HM5 A;  3L70 E;  1KYO E;  2XSO A;  2NUK A;  1SQV E;  4QDF B;  3EN1 A;  2NVF A;  1ZRT E;  4HM7 A;  2DE6 A;  2DE6 D;  2QPZ A;  4QDD A;  4NBC A;  2JO6 A;  3L71 E;  4NBC D;  3GOB A;  3VMG A;  2DE5 A;  4PD4 E;  3VMG D;  3GKE A;  1SQP E;  2DE5 D;  2YFJ A;  4HKV A;  1NYK A;  4HJL A;  2YVJ B;  2XSH A;  3H1J E;  2NVG A;  4H13 D;  2E4P A;  1UUW A;  1EG9 A;  1Z02 A;  1G8K B;  4OGQ D;  1Q90 C;  1O7G A;  1O7H A;  1SQQ E;  3TGU E;  3VMI A;  2E4Q A;  3VMI D;  3VCA A;  3GCF A;  4NBD A;  4NB8 A;  1NTZ E;  1BCC E;  4NBD D;  4NB8 D;  1VF5 D;  2E74 D;  2ZYL A;  1O7N A;  5KLI C;  1NTK E;  2NWF A;  2YFL A;  4EMJ B;  4NBE A;  4NB9 A;  4NB9 D;  4NBE D;  2I7F A;  3GTE A;  3N0Q A;  3GZX A;  2HMN A;  1VCK A;  4QUQ A;  4QUP A;  2B1X A;  2XR8 A;  5AEU A;  2D2C D;  2JZA A;  1EZV E;  1ULI A;  1O7P A;  2DE7 D;  3L72 E;  1NU1 E;  2HMJ A;  2FYU E;  1KB9 E;  2HMM A;  2BMO A;  3FOU A;  1NTM E;  2HML A;  2GBW A;  4HM2 A;  5HL4 A;  1BE3 E;  2ZT9 D;  2BMQ A;  2CKF A;  1SQB E;  1SJG A;  3CX5 E;  2E75 D;  3C0D A;  1Z03 A;  1RIE A;  1WQL A;  2Q3W A;  4P1C H;  4PV1 D;  4H0L D;  1UUV A;  1Z01 A;  4HM6 A;  4NBH A;  3D89 A;  4NBH D;  2QJY C;  2A06 E;  3GL2 A;  4HM1 A;  2GBX A;  1PPJ E;  4QDC A;  4NBA A;  4QUR A;  3CXH E;  1O7M A;  4NBA D;  1L0L E;  3L73 E;  3L74 E;  4HM0 A;  5KKZ C;  2IBZ E;  4QDF A;  2HMO A;  2DE7 A; 
#chains in the Genus database with same CATH homology
 3H1K E;  3GCE A;  1P84 E;  1O7W A;  3GZY A;  3CWB E;  3H1L E;  1PP9 E;  3BCC E;  1G8J B;  3AZC A;  3GB4 A;  4H44 D;  4U3F E;  4NBG A;  2QJP C;  1NDO A;  3VMH A;  1RFS A;  4NBG D;  3VMH D;  2BCC E;  3EQQ A;  1WW9 A;  2NVE A;  3H1H E;  1JM1 A;  2HMK A;  3GTS A;  5AEW A;  4AIV A;  2NUM A;  4HM4 A;  2YFI A;  1ULJ A;  2YIU C;  5CXM A;  3H1I E;  4HM8 A;  1L0N E;  2E76 D;  4NBF A;  1SQX E;  3GKQ A;  3GL0 A;  2BMR A;  3DQY A;  4HM3 A;  4NBF D;  2FYN C;  4QCK A;  2B24 A;  4NBB A;  4NBB D;  5BOK A;  2XRX A;  1VM9 A;  4AAY B;  3L75 E;  3VCP A;  2QJK C;  1FQT A;  4P1B H;  5KLV E;  4HM5 A;  3L70 E;  1KYO E;  2XSO A;  2NUK A;  1SQV E;  4QDF B;  3EN1 A;  2NVF A;  1ZRT E;  4HM7 A;  2DE6 A;  2DE6 D;  2QPZ A;  4QDD A;  4NBC A;  2JO6 A;  3L71 E;  4NBC D;  3GOB A;  3VMG A;  2DE5 A;  4PD4 E;  3VMG D;  3GKE A;  1SQP E;  2DE5 D;  2YFJ A;  4HKV A;  1NYK A;  4HJL A;  2YVJ B;  2XSH A;  3H1J E;  2NVG A;  4H13 D;  2E4P A;  1UUW A;  1EG9 A;  1Z02 A;  1G8K B;  4OGQ D;  1Q90 C;  1O7G A;  1O7H A;  1SQQ E;  3TGU E;  3VMI A;  2E4Q A;  3VMI D;  3VCA A;  3GCF A;  4NBD A;  4NB8 A;  1NTZ E;  1BCC E;  4NBD D;  4NB8 D;  1VF5 D;  2E74 D;  2ZYL A;  1O7N A;  5KLI C;  1NTK E;  2NWF A;  2YFL A;  4EMJ B;  4NBE A;  4NB9 A;  4NB9 D;  4NBE D;  2I7F A;  3GTE A;  3N0Q A;  3GZX A;  2HMN A;  1VCK A;  4QUQ A;  4QUP A;  2B1X A;  2XR8 A;  5AEU A;  2D2C D;  2JZA A;  1EZV E;  1ULI A;  1O7P A;  2DE7 D;  3L72 E;  1NU1 E;  2HMJ A;  2FYU E;  1KB9 E;  2HMM A;  2BMO A;  3FOU A;  1NTM E;  2HML A;  2GBW A;  4HM2 A;  5HL4 A;  1BE3 E;  2ZT9 D;  2BMQ A;  2CKF A;  1SQB E;  1SJG A;  3CX5 E;  2E75 D;  3C0D A;  1Z03 A;  1RIE A;  1WQL A;  2Q3W A;  4P1C H;  4PV1 D;  4H0L D;  1UUV A;  1Z01 A;  4HM6 A;  4NBH A;  3D89 A;  4NBH D;  2QJY C;  2A06 E;  3GL2 A;  4HM1 A;  2GBX A;  1PPJ E;  4QDC A;  4NBA A;  4QUR A;  3CXH E;  1O7M A;  4NBA D;  1L0L E;  3L73 E;  3L74 E;  4HM0 A;  5KKZ C;  2IBZ E;  4QDF A;  2HMO A;  2DE7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...