5AFHA

Alpha7-achbp in complex with lobeline
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
205
structure length
205
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
source organism Homo sapiens
total genus 46
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afhA00
4TNVA 4D01A 4LMLA 2XQ9A 5AFMB 3UU6A 2BR7A 3P50A 2WNCA 2BG9E 4EZ1A 3TLSA 3U8JA 4B5DA 1I9BA 4ZZCA 3ZDHA 3WTMA 1UW6A 4Z91A 2XZ6A 5HEJA 2XQ6A 4ZR6A 4TNWA 3RI5A 5AFKA 5J5IA 5J0ZA 3WTIA 2W8FA 5BRXA 4ZJTA 2XQ8A 3RQWA 4QH1A 3WTHA 4ILAA 5LG3A 3JAEA 4UXUA 2XZ5A 3UU8A 4UM3S 4WV9A 5JMEA 2XQAA 4IL4A 5LXBA 5FJVA 5HEGA 2ZJUA 2XNVA 5AFMA 3SQ9A 3WTOA 3WTKA 4TWDA 2PH9A 2YKSA 4A97A 4IL9A 2Y58A 5HEHA 3U8LA 2Y7YA 4ZZBA 2W8GA 5AFLA 5L4HA 5AINA 4ILCA 4ZK4A 5SYOA 4QH4A 4UM1A 3TLWA 3TLUA 1UX2A 2WNJA 4QACA 5CFBA 5J5GA 3WTLA 2BG9C 2X00D 3RIAA 2Y57A 4FRRA 2UZ6A 5J5HA 4LMKA 2BG9B 2XQ7A 4HFHA 3PMZA 3SH1A 2BYPA 3UQ7A 3JAFA 5HEUA 5BP0A 4PIRA 2VL0A 2XNUA 5IUXA 2BYSA 4HFBA 4COFA 2BYRA 3U8KA 3UQ4A 5AFHA 3EHZA 3GUAA 3JADA 4X5TA 5CO5A 3SQ6A 4ILBA 3IGQA 2BJ0A 3P4WA 2XNTA 3UUBA 4NZBA 4TWHA 2BYQA 3EAMA 4NPPA 3ZKRA 4BFQA 4UM3A 4UM3P 3TLVA 4HFDA 3LSVA 3UU4A 3PEOA 2WNLA 3RHWA 5TVCA 2XQ5A 2ZJVA 3ZDGA 5L47A 3UU3A 2XYTA 5KE4A 4A98A 2Y56A 4IREA 2YN6A 5J5FA 5HCJA 4QABA 4DBMA 5AFNA 3C79A 3EI0A 5KZUA 2BYNA 3SIOA 4XHEA 4AFHA 2C9TA 4HQPA 4Z90A 2BR8A 3T4MA 2QC1B 1UV6A 3WTNA 5HEOA 2YMDA 4ZRUA 5HCMA 3U8NA 3WTJA 4UY2A 4LMJA 4HFEA 2YOEA 3RQUA 4QH5A 5BW2A 2XYSA 4HFIA 4XK9A 3WIPA 4ALXA 2XQ4A 4HFCA 2PGZA 2WZYA 4TWFA 4AFTA 2Y54A 2WN9A 2BG9A 2XQ3A 3U8MA 5AFJA 4F8HA 3UU5A 4ZK1A 3RIFA 4ZJSA 2X00A 5L4EA 3C84A 4AFGA 4BQTA 3TLTA 2YMEA 4QAAA
chains in the Genus database with same CATH superfamily
4TNVA 4D01A 4LMLA 2XQ9A 5AFMB 3UU6A 2BR7A 3P50A 2WNCA 2BG9E 4EZ1A 3TLSA 3U8JA 4B5DA 1I9BA 4ZZCA 3ZDHA 3WTMA 1UW6A 4Z91A 2XZ6A 5HEJA 2XQ6A 4ZR6A 4TNWA 3RI5A 5AFKA 5J5IA 5J0ZA 3WTIA 2W8FA 5BRXA 4ZJTA 2XQ8A 3RQWA 4QH1A 3WTHA 4ILAA 5LG3A 3JAEA 4UXUA 2XZ5A 3UU8A 4UM3S 4WV9A 5JMEA 2XQAA 4IL4A 5LXBA 5FJVA 5HEGA 2ZJUA 2XNVA 5AFMA 3SQ9A 3WTOA 3WTKA 4TWDA 2PH9A 2YKSA 4A97A 4IL9A 2Y58A 5HEHA 3U8LA 2Y7YA 4ZZBA 2W8GA 5AFLA 5L4HA 5AINA 4ILCA 4ZK4A 5SYOA 4QH4A 4UM1A 3TLWA 3TLUA 1UX2A 2WNJA 4QACA 5CFBA 5J5GA 3WTLA 2BG9C 2X00D 3RIAA 2Y57A 4FRRA 2UZ6A 5J5HA 4LMKA 2BG9B 2XQ7A 4HFHA 3PMZA 3SH1A 2BYPA 3UQ7A 3JAFA 5HEUA 5BP0A 4PIRA 2VL0A 2XNUA 5IUXA 2BYSA 4HFBA 4COFA 2BYRA 3U8KA 3UQ4A 5AFHA 3EHZA 3GUAA 3JADA 4X5TA 5CO5A 3SQ6A 4ILBA 3IGQA 2BJ0A 3P4WA 2XNTA 3UUBA 4NZBA 4TWHA 2BYQA 3EAMA 4NPPA 3ZKRA 4BFQA 4UM3A 4UM3P 3TLVA 4HFDA 3LSVA 3UU4A 3PEOA 2WNLA 3RHWA 5TVCA 2XQ5A 2ZJVA 3ZDGA 5L47A 3UU3A 2XYTA 5KE4A 4A98A 2Y56A 4IREA 2YN6A 5J5FA 5HCJA 4QABA 4DBMA 5AFNA 3C79A 3EI0A 5KZUA 2BYNA 3SIOA 4XHEA 4AFHA 2C9TA 4HQPA 4Z90A 2BR8A 3T4MA 2QC1B 1UV6A 3WTNA 5HEOA 2YMDA 4ZRUA 5HCMA 3U8NA 3WTJA 4UY2A 4LMJA 4HFEA 2YOEA 3RQUA 4QH5A 5BW2A 2XYSA 4HFIA 4XK9A 3WIPA 4ALXA 2XQ4A 4HFCA 2PGZA 2WZYA 4TWFA 4AFTA 2Y54A 2WN9A 2BG9A 2XQ3A 3U8MA 5AFJA 4F8HA 3UU5A 4ZK1A 3RIFA 4ZJSA 2X00A 5L4EA 3C84A 4AFGA 4BQTA 3TLTA 2YMEA 4QAAA
chains in the Genus database with same CATH topology
4TNVA 4D01A 4LMLA 2XQ9A 5AFMB 3UU6A 2BR7A 3P50A 2WNCA 2BG9E 4EZ1A 3TLSA 3U8JA 4B5DA 1I9BA 4ZZCA 3ZDHA 3WTMA 1UW6A 4Z91A 2XZ6A 5HEJA 2XQ6A 4ZR6A 4TNWA 3RI5A 5AFKA 5J5IA 5J0ZA 3WTIA 2W8FA 5BRXA 4ZJTA 2XQ8A 3RQWA 4QH1A 3WTHA 4ILAA 5LG3A 3JAEA 4UXUA 2XZ5A 3UU8A 4UM3S 4WV9A 5JMEA 2XQAA 4IL4A 5LXBA 5FJVA 5HEGA 2ZJUA 2XNVA 5AFMA 3SQ9A 3WTOA 3WTKA 4TWDA 2PH9A 2YKSA 4A97A 4IL9A 2Y58A 5HEHA 3U8LA 2Y7YA 4ZZBA 2W8GA 5AFLA 5L4HA 5AINA 4ILCA 4ZK4A 5SYOA 4QH4A 4UM1A 3TLWA 3TLUA 1UX2A 2WNJA 4QACA 5CFBA 5J5GA 3WTLA 2BG9C 2X00D 3RIAA 2Y57A 4FRRA 2UZ6A 5J5HA 4LMKA 2BG9B 2XQ7A 4HFHA 3PMZA 3SH1A 2BYPA 3UQ7A 3JAFA 5HEUA 5BP0A 4PIRA 2VL0A 2XNUA 5IUXA 2BYSA 4HFBA 4COFA 2BYRA 3U8KA 3UQ4A 5AFHA 3EHZA 3GUAA 3JADA 4X5TA 5CO5A 3SQ6A 4ILBA 3IGQA 2BJ0A 3P4WA 2XNTA 3UUBA 4NZBA 4TWHA 2BYQA 3EAMA 4NPPA 3ZKRA 4BFQA 4UM3A 4UM3P 3TLVA 4HFDA 3LSVA 3UU4A 3PEOA 2WNLA 3RHWA 5TVCA 2XQ5A 2ZJVA 3ZDGA 5L47A 3UU3A 2XYTA 5KE4A 4A98A 2Y56A 4IREA 2YN6A 5J5FA 5HCJA 4QABA 4DBMA 5AFNA 3C79A 3EI0A 5KZUA 2BYNA 3SIOA 4XHEA 4AFHA 2C9TA 4HQPA 4Z90A 2BR8A 3T4MA 2QC1B 1UV6A 3WTNA 5HEOA 2YMDA 4ZRUA 5HCMA 3U8NA 3WTJA 4UY2A 4LMJA 4HFEA 2YOEA 3RQUA 4QH5A 5BW2A 2XYSA 4HFIA 4XK9A 3WIPA 4ALXA 2XQ4A 4HFCA 2PGZA 2WZYA 4TWFA 4AFTA 2Y54A 2WN9A 2BG9A 2XQ3A 3U8MA 5AFJA 4F8HA 3UU5A 4ZK1A 3RIFA 4ZJSA 2X00A 5L4EA 3C84A 4AFGA 4BQTA 3TLTA 2YMEA 4QAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TNV A;  4D01 A;  4LML A;  2XQ9 A;  5AFM B;  3UU6 A;  2BR7 A;  3P50 A;  2WNC A;  2BG9 E;  4EZ1 A;  3TLS A;  3U8J A;  4B5D A;  1I9B A;  4ZZC A;  3ZDH A;  3WTM A;  1UW6 A;  4Z91 A;  2XZ6 A;  5HEJ A;  2XQ6 A;  4ZR6 A;  4TNW A;  3RI5 A;  5AFK A;  5J5I A;  5J0Z A;  3WTI A;  2W8F A;  5BRX A;  4ZJT A;  2XQ8 A;  3RQW A;  4QH1 A;  3WTH A;  4ILA A;  5LG3 A;  3JAE A;  4UXU A;  2XZ5 A;  3UU8 A;  4UM3 S;  4WV9 A;  5JME A;  2XQA A;  4IL4 A;  5LXB A;  5FJV A;  5HEG A;  2ZJU A;  2XNV A;  5AFM A;  3SQ9 A;  3WTO A;  3WTK A;  4TWD A;  2PH9 A;  2YKS A;  4A97 A;  4IL9 A;  2Y58 A;  5HEH A;  3U8L A;  2Y7Y A;  4ZZB A;  2W8G A;  5AFL A;  5L4H A;  5AIN A;  4ILC A;  4ZK4 A;  5SYO A;  4QH4 A;  4UM1 A;  3TLW A;  3TLU A;  1UX2 A;  2WNJ A;  4QAC A;  5CFB A;  5J5G A;  3WTL A;  2BG9 C;  2X00 D;  3RIA A;  2Y57 A;  4FRR A;  2UZ6 A;  5J5H A;  4LMK A;  2BG9 B;  2XQ7 A;  4HFH A;  3PMZ A;  3SH1 A;  2BYP A;  3UQ7 A;  3JAF A;  5HEU A;  5BP0 A;  4PIR A;  2VL0 A;  2XNU A;  5IUX A;  2BYS A;  4HFB A;  4COF A;  2BYR A;  3U8K A;  3UQ4 A;  5AFH A;  3EHZ A;  3GUA A;  3JAD A;  4X5T A;  5CO5 A;  3SQ6 A;  4ILB A;  3IGQ A;  2BJ0 A;  3P4W A;  2XNT A;  3UUB A;  4NZB A;  4TWH A;  2BYQ A;  3EAM A;  4NPP A;  3ZKR A;  4BFQ A;  4UM3 A;  4UM3 P;  3TLV A;  4HFD A;  3LSV A;  3UU4 A;  3PEO A;  2WNL A;  3RHW A;  5TVC A;  2XQ5 A;  2ZJV A;  3ZDG A;  5L47 A;  3UU3 A;  2XYT A;  5KE4 A;  4A98 A;  2Y56 A;  4IRE A;  2YN6 A;  5J5F A;  5HCJ A;  4QAB A;  4DBM A;  5AFN A;  3C79 A;  3EI0 A;  5KZU A;  2BYN A;  3SIO A;  4XHE A;  4AFH A;  2C9T A;  4HQP A;  4Z90 A;  2BR8 A;  3T4M A;  2QC1 B;  1UV6 A;  3WTN A;  5HEO A;  2YMD A;  4ZRU A;  5HCM A;  3U8N A;  3WTJ A;  4UY2 A;  4LMJ A;  4HFE A;  2YOE A;  3RQU A;  4QH5 A;  5BW2 A;  2XYS A;  4HFI A;  4XK9 A;  3WIP A;  4ALX A;  2XQ4 A;  4HFC A;  2PGZ A;  2WZY A;  4TWF A;  4AFT A;  2Y54 A;  2WN9 A;  2BG9 A;  2XQ3 A;  3U8M A;  5AFJ A;  4F8H A;  3UU5 A;  4ZK1 A;  3RIF A;  4ZJS A;  2X00 A;  5L4E A;  3C84 A;  4AFG A;  4BQT A;  3TLT A;  2YME A;  4QAA A; 
#chains in the Genus database with same CATH topology
 4TNV A;  4D01 A;  4LML A;  2XQ9 A;  5AFM B;  3UU6 A;  2BR7 A;  3P50 A;  2WNC A;  2BG9 E;  4EZ1 A;  3TLS A;  3U8J A;  4B5D A;  1I9B A;  4ZZC A;  3ZDH A;  3WTM A;  1UW6 A;  4Z91 A;  2XZ6 A;  5HEJ A;  2XQ6 A;  4ZR6 A;  4TNW A;  3RI5 A;  5AFK A;  5J5I A;  5J0Z A;  3WTI A;  2W8F A;  5BRX A;  4ZJT A;  2XQ8 A;  3RQW A;  4QH1 A;  3WTH A;  4ILA A;  5LG3 A;  3JAE A;  4UXU A;  2XZ5 A;  3UU8 A;  4UM3 S;  4WV9 A;  5JME A;  2XQA A;  4IL4 A;  5LXB A;  5FJV A;  5HEG A;  2ZJU A;  2XNV A;  5AFM A;  3SQ9 A;  3WTO A;  3WTK A;  4TWD A;  2PH9 A;  2YKS A;  4A97 A;  4IL9 A;  2Y58 A;  5HEH A;  3U8L A;  2Y7Y A;  4ZZB A;  2W8G A;  5AFL A;  5L4H A;  5AIN A;  4ILC A;  4ZK4 A;  5SYO A;  4QH4 A;  4UM1 A;  3TLW A;  3TLU A;  1UX2 A;  2WNJ A;  4QAC A;  5CFB A;  5J5G A;  3WTL A;  2BG9 C;  2X00 D;  3RIA A;  2Y57 A;  4FRR A;  2UZ6 A;  5J5H A;  4LMK A;  2BG9 B;  2XQ7 A;  4HFH A;  3PMZ A;  3SH1 A;  2BYP A;  3UQ7 A;  3JAF A;  5HEU A;  5BP0 A;  4PIR A;  2VL0 A;  2XNU A;  5IUX A;  2BYS A;  4HFB A;  4COF A;  2BYR A;  3U8K A;  3UQ4 A;  5AFH A;  3EHZ A;  3GUA A;  3JAD A;  4X5T A;  5CO5 A;  3SQ6 A;  4ILB A;  3IGQ A;  2BJ0 A;  3P4W A;  2XNT A;  3UUB A;  4NZB A;  4TWH A;  2BYQ A;  3EAM A;  4NPP A;  3ZKR A;  4BFQ A;  4UM3 A;  4UM3 P;  3TLV A;  4HFD A;  3LSV A;  3UU4 A;  3PEO A;  2WNL A;  3RHW A;  5TVC A;  2XQ5 A;  2ZJV A;  3ZDG A;  5L47 A;  3UU3 A;  2XYT A;  5KE4 A;  4A98 A;  2Y56 A;  4IRE A;  2YN6 A;  5J5F A;  5HCJ A;  4QAB A;  4DBM A;  5AFN A;  3C79 A;  3EI0 A;  5KZU A;  2BYN A;  3SIO A;  4XHE A;  4AFH A;  2C9T A;  4HQP A;  4Z90 A;  2BR8 A;  3T4M A;  2QC1 B;  1UV6 A;  3WTN A;  5HEO A;  2YMD A;  4ZRU A;  5HCM A;  3U8N A;  3WTJ A;  4UY2 A;  4LMJ A;  4HFE A;  2YOE A;  3RQU A;  4QH5 A;  5BW2 A;  2XYS A;  4HFI A;  4XK9 A;  3WIP A;  4ALX A;  2XQ4 A;  4HFC A;  2PGZ A;  2WZY A;  4TWF A;  4AFT A;  2Y54 A;  2WN9 A;  2BG9 A;  2XQ3 A;  3U8M A;  5AFJ A;  4F8H A;  3UU5 A;  4ZK1 A;  3RIF A;  4ZJS A;  2X00 A;  5L4E A;  3C84 A;  4AFG A;  4BQT A;  3TLT A;  2YME A;  4QAA A; 
#chains in the Genus database with same CATH homology
 4TNV A;  4D01 A;  4LML A;  2XQ9 A;  5AFM B;  3UU6 A;  2BR7 A;  3P50 A;  2WNC A;  2BG9 E;  4EZ1 A;  3TLS A;  3U8J A;  4B5D A;  1I9B A;  4ZZC A;  3ZDH A;  3WTM A;  1UW6 A;  4Z91 A;  2XZ6 A;  5HEJ A;  2XQ6 A;  4ZR6 A;  4TNW A;  3RI5 A;  5AFK A;  5J5I A;  5J0Z A;  3WTI A;  2W8F A;  5BRX A;  4ZJT A;  2XQ8 A;  3RQW A;  4QH1 A;  3WTH A;  4ILA A;  5LG3 A;  3JAE A;  4UXU A;  2XZ5 A;  3UU8 A;  4UM3 S;  4WV9 A;  5JME A;  2XQA A;  4IL4 A;  5LXB A;  5FJV A;  5HEG A;  2ZJU A;  2XNV A;  5AFM A;  3SQ9 A;  3WTO A;  3WTK A;  4TWD A;  2PH9 A;  2YKS A;  4A97 A;  4IL9 A;  2Y58 A;  5HEH A;  3U8L A;  2Y7Y A;  4ZZB A;  2W8G A;  5AFL A;  5L4H A;  5AIN A;  4ILC A;  4ZK4 A;  5SYO A;  4QH4 A;  4UM1 A;  3TLW A;  3TLU A;  1UX2 A;  2WNJ A;  4QAC A;  5CFB A;  5J5G A;  3WTL A;  2BG9 C;  2X00 D;  3RIA A;  2Y57 A;  4FRR A;  2UZ6 A;  5J5H A;  4LMK A;  2BG9 B;  2XQ7 A;  4HFH A;  3PMZ A;  3SH1 A;  2BYP A;  3UQ7 A;  3JAF A;  5HEU A;  5BP0 A;  4PIR A;  2VL0 A;  2XNU A;  5IUX A;  2BYS A;  4HFB A;  4COF A;  2BYR A;  3U8K A;  3UQ4 A;  5AFH A;  3EHZ A;  3GUA A;  3JAD A;  4X5T A;  5CO5 A;  3SQ6 A;  4ILB A;  3IGQ A;  2BJ0 A;  3P4W A;  2XNT A;  3UUB A;  4NZB A;  4TWH A;  2BYQ A;  3EAM A;  4NPP A;  3ZKR A;  4BFQ A;  4UM3 A;  4UM3 P;  3TLV A;  4HFD A;  3LSV A;  3UU4 A;  3PEO A;  2WNL A;  3RHW A;  5TVC A;  2XQ5 A;  2ZJV A;  3ZDG A;  5L47 A;  3UU3 A;  2XYT A;  5KE4 A;  4A98 A;  2Y56 A;  4IRE A;  2YN6 A;  5J5F A;  5HCJ A;  4QAB A;  4DBM A;  5AFN A;  3C79 A;  3EI0 A;  5KZU A;  2BYN A;  3SIO A;  4XHE A;  4AFH A;  2C9T A;  4HQP A;  4Z90 A;  2BR8 A;  3T4M A;  2QC1 B;  1UV6 A;  3WTN A;  5HEO A;  2YMD A;  4ZRU A;  5HCM A;  3U8N A;  3WTJ A;  4UY2 A;  4LMJ A;  4HFE A;  2YOE A;  3RQU A;  4QH5 A;  5BW2 A;  2XYS A;  4HFI A;  4XK9 A;  3WIP A;  4ALX A;  2XQ4 A;  4HFC A;  2PGZ A;  2WZY A;  4TWF A;  4AFT A;  2Y54 A;  2WN9 A;  2BG9 A;  2XQ3 A;  3U8M A;  5AFJ A;  4F8H A;  3UU5 A;  4ZK1 A;  3RIF A;  4ZJS A;  2X00 A;  5L4E A;  3C84 A;  4AFG A;  4BQT A;  3TLT A;  2YME A;  4QAA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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