5AFMA

Alpha7-achbp in complex with lobeline and fragment 4
Total Genus 43
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
205
structure length
205
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
source organism Homo sapiens
total genus 43
structure length 205
sequence length 205
chains with identical sequence C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afmA00
4UM3A 5L4EA 2BG9E 3RIAA 3PEOA 4QACA 3UU4A 4XHEA 3SQ6A 3ZDGA 2YKSA 3RI5A 4BQTA 2XQ4A 2XQ7A 2XZ5A 3TLWA 4HFEA 2ZJVA 3C84A 4QH1A 4TWDA 3UU6A 3ZDHA 5AFJA 2VL0A 2BG9B 4HFBA 5KZUA 5J0ZA 5HEUA 2Y57A 4HFIA 4NPPA 5J5GA 4ZRUA 3SH1A 5SYOA 5AINA 4X5TA 4AFGA 2BYPA 4TWFA 2X00A 4QAAA 4XK9A 2Y54A 2Y7YA 3T4MA 2XNTA 4ZR6A 5FJVA 4FRRA 3P4WA 3SQ9A 4AFHA 5IUXA 3TLVA 3UU3A 4ZJTA 1UW6A 5AFNA 5L47A 4D01A 5L4HA 3U8NA 3UU5A 3TLSA 4WV9A 3UU8A 2WNJA 5HEJA 2WNCA 5LXBA 2XNUA 4Z91A 2PGZA 4BFQA 2WN9A 4NZBA 3U8LA 5JMEA 2X00D 5TVCA 4ZK1A 2BG9C 5AFMB 3RQWA 2BYRA 4UM3S 5J5FA 4IL9A 5AFHA 3U8MA 5CFBA 3C79A 4A97A 5J5HA 3WIPA 2C9TA 4UM3P 2XQ9A 2XZ6A 2BG9A 4TNWA 3IGQA 2XQ6A 3RHWA 4ZK4A 2XNVA 3WTNA 2XQ5A 3P50A 4HFHA 3WTJA 4ZJSA 3RIFA 5BW2A 5CO5A 2QC1B 3WTKA 4AFTA 2ZJUA 2XQ8A 4LMKA 4UY2A 4ILBA 2BYNA 4QH4A 3UQ4A 4ZZBA 3WTHA 3GUAA 3TLTA 3U8JA 3WTLA 3WTOA 4A98A 2XYSA 5HEHA 4IREA 2BR8A 4HFCA 4Z90A 4EZ1A 2BR7A 2BYSA 4UM1A 4PIRA 3UQ7A 3ZKRA 4ALXA 1UX2A 1I9BA 4TNVA 4ILCA 2WZYA 3WTIA 4LMJA 4UXUA 4TWHA 3U8KA 2YOEA 3EAMA 3TLUA 2PH9A 4IL4A 4COFA 5KE4A 2Y56A 3UUBA 2YN6A 2UZ6A 5HEOA 3WTMA 5LG3A 2Y58A 3EHZA 5AFMA 4DBMA 4HFDA 2WNLA 3JAFA 4F8HA 4ZZCA 4QABA 3EI0A 4HQPA 5J5IA 5AFKA 2YMDA 5HEGA 4QH5A 5AFLA 4ILAA 2W8FA 2BJ0A 5HCJA 5HCMA 3JAEA 2YMEA 1UV6A 3RQUA 3JADA 3LSVA 3SIOA 4B5DA 2BYQA 3PMZA 2XQ3A 2XYTA 4LMLA 2W8GA 5BP0A 2XQAA 5BRXA
chains in the Genus database with same CATH superfamily
4UM3A 5L4EA 2BG9E 3RIAA 3PEOA 4QACA 3UU4A 4XHEA 3SQ6A 3ZDGA 2YKSA 3RI5A 4BQTA 2XQ4A 2XQ7A 2XZ5A 3TLWA 4HFEA 2ZJVA 3C84A 4QH1A 4TWDA 3UU6A 3ZDHA 5AFJA 2VL0A 2BG9B 4HFBA 5KZUA 5J0ZA 5HEUA 2Y57A 4HFIA 4NPPA 5J5GA 4ZRUA 3SH1A 5SYOA 5AINA 4X5TA 4AFGA 2BYPA 4TWFA 2X00A 4QAAA 4XK9A 2Y54A 2Y7YA 3T4MA 2XNTA 4ZR6A 5FJVA 4FRRA 3P4WA 3SQ9A 4AFHA 5IUXA 3TLVA 3UU3A 4ZJTA 1UW6A 5AFNA 5L47A 4D01A 5L4HA 3U8NA 3UU5A 3TLSA 4WV9A 3UU8A 2WNJA 5HEJA 2WNCA 5LXBA 2XNUA 4Z91A 2PGZA 4BFQA 2WN9A 4NZBA 3U8LA 5JMEA 2X00D 5TVCA 4ZK1A 2BG9C 5AFMB 3RQWA 2BYRA 4UM3S 5J5FA 4IL9A 5AFHA 3U8MA 5CFBA 3C79A 4A97A 5J5HA 3WIPA 2C9TA 4UM3P 2XQ9A 2XZ6A 2BG9A 4TNWA 3IGQA 2XQ6A 3RHWA 4ZK4A 2XNVA 3WTNA 2XQ5A 3P50A 4HFHA 3WTJA 4ZJSA 3RIFA 5BW2A 5CO5A 2QC1B 3WTKA 4AFTA 2ZJUA 2XQ8A 4LMKA 4UY2A 4ILBA 2BYNA 4QH4A 3UQ4A 4ZZBA 3WTHA 3GUAA 3TLTA 3U8JA 3WTLA 3WTOA 4A98A 2XYSA 5HEHA 4IREA 2BR8A 4HFCA 4Z90A 4EZ1A 2BR7A 2BYSA 4UM1A 4PIRA 3UQ7A 3ZKRA 4ALXA 1UX2A 1I9BA 4TNVA 4ILCA 2WZYA 3WTIA 4LMJA 4UXUA 4TWHA 3U8KA 2YOEA 3EAMA 3TLUA 2PH9A 4IL4A 4COFA 5KE4A 2Y56A 3UUBA 2YN6A 2UZ6A 5HEOA 3WTMA 5LG3A 2Y58A 3EHZA 5AFMA 4DBMA 4HFDA 2WNLA 3JAFA 4F8HA 4ZZCA 4QABA 3EI0A 4HQPA 5J5IA 5AFKA 2YMDA 5HEGA 4QH5A 5AFLA 4ILAA 2W8FA 2BJ0A 5HCJA 5HCMA 3JAEA 2YMEA 1UV6A 3RQUA 3JADA 3LSVA 3SIOA 4B5DA 2BYQA 3PMZA 2XQ3A 2XYTA 4LMLA 2W8GA 5BP0A 2XQAA 5BRXA
chains in the Genus database with same CATH topology
4UM3A 5L4EA 2BG9E 3RIAA 3PEOA 4QACA 3UU4A 4XHEA 3SQ6A 3ZDGA 2YKSA 3RI5A 4BQTA 2XQ4A 2XQ7A 2XZ5A 3TLWA 4HFEA 2ZJVA 3C84A 4QH1A 4TWDA 3UU6A 3ZDHA 5AFJA 2VL0A 2BG9B 4HFBA 5KZUA 5J0ZA 5HEUA 2Y57A 4HFIA 4NPPA 5J5GA 4ZRUA 3SH1A 5SYOA 5AINA 4X5TA 4AFGA 2BYPA 4TWFA 2X00A 4QAAA 4XK9A 2Y54A 2Y7YA 3T4MA 2XNTA 4ZR6A 5FJVA 4FRRA 3P4WA 3SQ9A 4AFHA 5IUXA 3TLVA 3UU3A 4ZJTA 1UW6A 5AFNA 5L47A 4D01A 5L4HA 3U8NA 3UU5A 3TLSA 4WV9A 3UU8A 2WNJA 5HEJA 2WNCA 5LXBA 2XNUA 4Z91A 2PGZA 4BFQA 2WN9A 4NZBA 3U8LA 5JMEA 2X00D 5TVCA 4ZK1A 2BG9C 5AFMB 3RQWA 2BYRA 4UM3S 5J5FA 4IL9A 5AFHA 3U8MA 5CFBA 3C79A 4A97A 5J5HA 3WIPA 2C9TA 4UM3P 2XQ9A 2XZ6A 2BG9A 4TNWA 3IGQA 2XQ6A 3RHWA 4ZK4A 2XNVA 3WTNA 2XQ5A 3P50A 4HFHA 3WTJA 4ZJSA 3RIFA 5BW2A 5CO5A 2QC1B 3WTKA 4AFTA 2ZJUA 2XQ8A 4LMKA 4UY2A 4ILBA 2BYNA 4QH4A 3UQ4A 4ZZBA 3WTHA 3GUAA 3TLTA 3U8JA 3WTLA 3WTOA 4A98A 2XYSA 5HEHA 4IREA 2BR8A 4HFCA 4Z90A 4EZ1A 2BR7A 2BYSA 4UM1A 4PIRA 3UQ7A 3ZKRA 4ALXA 1UX2A 1I9BA 4TNVA 4ILCA 2WZYA 3WTIA 4LMJA 4UXUA 4TWHA 3U8KA 2YOEA 3EAMA 3TLUA 2PH9A 4IL4A 4COFA 5KE4A 2Y56A 3UUBA 2YN6A 2UZ6A 5HEOA 3WTMA 5LG3A 2Y58A 3EHZA 5AFMA 4DBMA 4HFDA 2WNLA 3JAFA 4F8HA 4ZZCA 4QABA 3EI0A 4HQPA 5J5IA 5AFKA 2YMDA 5HEGA 4QH5A 5AFLA 4ILAA 2W8FA 2BJ0A 5HCJA 5HCMA 3JAEA 2YMEA 1UV6A 3RQUA 3JADA 3LSVA 3SIOA 4B5DA 2BYQA 3PMZA 2XQ3A 2XYTA 4LMLA 2W8GA 5BP0A 2XQAA 5BRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UM3 A;  5L4E A;  2BG9 E;  3RIA A;  3PEO A;  4QAC A;  3UU4 A;  4XHE A;  3SQ6 A;  3ZDG A;  2YKS A;  3RI5 A;  4BQT A;  2XQ4 A;  2XQ7 A;  2XZ5 A;  3TLW A;  4HFE A;  2ZJV A;  3C84 A;  4QH1 A;  4TWD A;  3UU6 A;  3ZDH A;  5AFJ A;  2VL0 A;  2BG9 B;  4HFB A;  5KZU A;  5J0Z A;  5HEU A;  2Y57 A;  4HFI A;  4NPP A;  5J5G A;  4ZRU A;  3SH1 A;  5SYO A;  5AIN A;  4X5T A;  4AFG A;  2BYP A;  4TWF A;  2X00 A;  4QAA A;  4XK9 A;  2Y54 A;  2Y7Y A;  3T4M A;  2XNT A;  4ZR6 A;  5FJV A;  4FRR A;  3P4W A;  3SQ9 A;  4AFH A;  5IUX A;  3TLV A;  3UU3 A;  4ZJT A;  1UW6 A;  5AFN A;  5L47 A;  4D01 A;  5L4H A;  3U8N A;  3UU5 A;  3TLS A;  4WV9 A;  3UU8 A;  2WNJ A;  5HEJ A;  2WNC A;  5LXB A;  2XNU A;  4Z91 A;  2PGZ A;  4BFQ A;  2WN9 A;  4NZB A;  3U8L A;  5JME A;  2X00 D;  5TVC A;  4ZK1 A;  2BG9 C;  5AFM B;  3RQW A;  2BYR A;  4UM3 S;  5J5F A;  4IL9 A;  5AFH A;  3U8M A;  5CFB A;  3C79 A;  4A97 A;  5J5H A;  3WIP A;  2C9T A;  4UM3 P;  2XQ9 A;  2XZ6 A;  2BG9 A;  4TNW A;  3IGQ A;  2XQ6 A;  3RHW A;  4ZK4 A;  2XNV A;  3WTN A;  2XQ5 A;  3P50 A;  4HFH A;  3WTJ A;  4ZJS A;  3RIF A;  5BW2 A;  5CO5 A;  2QC1 B;  3WTK A;  4AFT A;  2ZJU A;  2XQ8 A;  4LMK A;  4UY2 A;  4ILB A;  2BYN A;  4QH4 A;  3UQ4 A;  4ZZB A;  3WTH A;  3GUA A;  3TLT A;  3U8J A;  3WTL A;  3WTO A;  4A98 A;  2XYS A;  5HEH A;  4IRE A;  2BR8 A;  4HFC A;  4Z90 A;  4EZ1 A;  2BR7 A;  2BYS A;  4UM1 A;  4PIR A;  3UQ7 A;  3ZKR A;  4ALX A;  1UX2 A;  1I9B A;  4TNV A;  4ILC A;  2WZY A;  3WTI A;  4LMJ A;  4UXU A;  4TWH A;  3U8K A;  2YOE A;  3EAM A;  3TLU A;  2PH9 A;  4IL4 A;  4COF A;  5KE4 A;  2Y56 A;  3UUB A;  2YN6 A;  2UZ6 A;  5HEO A;  3WTM A;  5LG3 A;  2Y58 A;  3EHZ A;  5AFM A;  4DBM A;  4HFD A;  2WNL A;  3JAF A;  4F8H A;  4ZZC A;  4QAB A;  3EI0 A;  4HQP A;  5J5I A;  5AFK A;  2YMD A;  5HEG A;  4QH5 A;  5AFL A;  4ILA A;  2W8F A;  2BJ0 A;  5HCJ A;  5HCM A;  3JAE A;  2YME A;  1UV6 A;  3RQU A;  3JAD A;  3LSV A;  3SIO A;  4B5D A;  2BYQ A;  3PMZ A;  2XQ3 A;  2XYT A;  4LML A;  2W8G A;  5BP0 A;  2XQA A;  5BRX A; 
#chains in the Genus database with same CATH topology
 4UM3 A;  5L4E A;  2BG9 E;  3RIA A;  3PEO A;  4QAC A;  3UU4 A;  4XHE A;  3SQ6 A;  3ZDG A;  2YKS A;  3RI5 A;  4BQT A;  2XQ4 A;  2XQ7 A;  2XZ5 A;  3TLW A;  4HFE A;  2ZJV A;  3C84 A;  4QH1 A;  4TWD A;  3UU6 A;  3ZDH A;  5AFJ A;  2VL0 A;  2BG9 B;  4HFB A;  5KZU A;  5J0Z A;  5HEU A;  2Y57 A;  4HFI A;  4NPP A;  5J5G A;  4ZRU A;  3SH1 A;  5SYO A;  5AIN A;  4X5T A;  4AFG A;  2BYP A;  4TWF A;  2X00 A;  4QAA A;  4XK9 A;  2Y54 A;  2Y7Y A;  3T4M A;  2XNT A;  4ZR6 A;  5FJV A;  4FRR A;  3P4W A;  3SQ9 A;  4AFH A;  5IUX A;  3TLV A;  3UU3 A;  4ZJT A;  1UW6 A;  5AFN A;  5L47 A;  4D01 A;  5L4H A;  3U8N A;  3UU5 A;  3TLS A;  4WV9 A;  3UU8 A;  2WNJ A;  5HEJ A;  2WNC A;  5LXB A;  2XNU A;  4Z91 A;  2PGZ A;  4BFQ A;  2WN9 A;  4NZB A;  3U8L A;  5JME A;  2X00 D;  5TVC A;  4ZK1 A;  2BG9 C;  5AFM B;  3RQW A;  2BYR A;  4UM3 S;  5J5F A;  4IL9 A;  5AFH A;  3U8M A;  5CFB A;  3C79 A;  4A97 A;  5J5H A;  3WIP A;  2C9T A;  4UM3 P;  2XQ9 A;  2XZ6 A;  2BG9 A;  4TNW A;  3IGQ A;  2XQ6 A;  3RHW A;  4ZK4 A;  2XNV A;  3WTN A;  2XQ5 A;  3P50 A;  4HFH A;  3WTJ A;  4ZJS A;  3RIF A;  5BW2 A;  5CO5 A;  2QC1 B;  3WTK A;  4AFT A;  2ZJU A;  2XQ8 A;  4LMK A;  4UY2 A;  4ILB A;  2BYN A;  4QH4 A;  3UQ4 A;  4ZZB A;  3WTH A;  3GUA A;  3TLT A;  3U8J A;  3WTL A;  3WTO A;  4A98 A;  2XYS A;  5HEH A;  4IRE A;  2BR8 A;  4HFC A;  4Z90 A;  4EZ1 A;  2BR7 A;  2BYS A;  4UM1 A;  4PIR A;  3UQ7 A;  3ZKR A;  4ALX A;  1UX2 A;  1I9B A;  4TNV A;  4ILC A;  2WZY A;  3WTI A;  4LMJ A;  4UXU A;  4TWH A;  3U8K A;  2YOE A;  3EAM A;  3TLU A;  2PH9 A;  4IL4 A;  4COF A;  5KE4 A;  2Y56 A;  3UUB A;  2YN6 A;  2UZ6 A;  5HEO A;  3WTM A;  5LG3 A;  2Y58 A;  3EHZ A;  5AFM A;  4DBM A;  4HFD A;  2WNL A;  3JAF A;  4F8H A;  4ZZC A;  4QAB A;  3EI0 A;  4HQP A;  5J5I A;  5AFK A;  2YMD A;  5HEG A;  4QH5 A;  5AFL A;  4ILA A;  2W8F A;  2BJ0 A;  5HCJ A;  5HCM A;  3JAE A;  2YME A;  1UV6 A;  3RQU A;  3JAD A;  3LSV A;  3SIO A;  4B5D A;  2BYQ A;  3PMZ A;  2XQ3 A;  2XYT A;  4LML A;  2W8G A;  5BP0 A;  2XQA A;  5BRX A; 
#chains in the Genus database with same CATH homology
 4UM3 A;  5L4E A;  2BG9 E;  3RIA A;  3PEO A;  4QAC A;  3UU4 A;  4XHE A;  3SQ6 A;  3ZDG A;  2YKS A;  3RI5 A;  4BQT A;  2XQ4 A;  2XQ7 A;  2XZ5 A;  3TLW A;  4HFE A;  2ZJV A;  3C84 A;  4QH1 A;  4TWD A;  3UU6 A;  3ZDH A;  5AFJ A;  2VL0 A;  2BG9 B;  4HFB A;  5KZU A;  5J0Z A;  5HEU A;  2Y57 A;  4HFI A;  4NPP A;  5J5G A;  4ZRU A;  3SH1 A;  5SYO A;  5AIN A;  4X5T A;  4AFG A;  2BYP A;  4TWF A;  2X00 A;  4QAA A;  4XK9 A;  2Y54 A;  2Y7Y A;  3T4M A;  2XNT A;  4ZR6 A;  5FJV A;  4FRR A;  3P4W A;  3SQ9 A;  4AFH A;  5IUX A;  3TLV A;  3UU3 A;  4ZJT A;  1UW6 A;  5AFN A;  5L47 A;  4D01 A;  5L4H A;  3U8N A;  3UU5 A;  3TLS A;  4WV9 A;  3UU8 A;  2WNJ A;  5HEJ A;  2WNC A;  5LXB A;  2XNU A;  4Z91 A;  2PGZ A;  4BFQ A;  2WN9 A;  4NZB A;  3U8L A;  5JME A;  2X00 D;  5TVC A;  4ZK1 A;  2BG9 C;  5AFM B;  3RQW A;  2BYR A;  4UM3 S;  5J5F A;  4IL9 A;  5AFH A;  3U8M A;  5CFB A;  3C79 A;  4A97 A;  5J5H A;  3WIP A;  2C9T A;  4UM3 P;  2XQ9 A;  2XZ6 A;  2BG9 A;  4TNW A;  3IGQ A;  2XQ6 A;  3RHW A;  4ZK4 A;  2XNV A;  3WTN A;  2XQ5 A;  3P50 A;  4HFH A;  3WTJ A;  4ZJS A;  3RIF A;  5BW2 A;  5CO5 A;  2QC1 B;  3WTK A;  4AFT A;  2ZJU A;  2XQ8 A;  4LMK A;  4UY2 A;  4ILB A;  2BYN A;  4QH4 A;  3UQ4 A;  4ZZB A;  3WTH A;  3GUA A;  3TLT A;  3U8J A;  3WTL A;  3WTO A;  4A98 A;  2XYS A;  5HEH A;  4IRE A;  2BR8 A;  4HFC A;  4Z90 A;  4EZ1 A;  2BR7 A;  2BYS A;  4UM1 A;  4PIR A;  3UQ7 A;  3ZKR A;  4ALX A;  1UX2 A;  1I9B A;  4TNV A;  4ILC A;  2WZY A;  3WTI A;  4LMJ A;  4UXU A;  4TWH A;  3U8K A;  2YOE A;  3EAM A;  3TLU A;  2PH9 A;  4IL4 A;  4COF A;  5KE4 A;  2Y56 A;  3UUB A;  2YN6 A;  2UZ6 A;  5HEO A;  3WTM A;  5LG3 A;  2Y58 A;  3EHZ A;  5AFM A;  4DBM A;  4HFD A;  2WNL A;  3JAF A;  4F8H A;  4ZZC A;  4QAB A;  3EI0 A;  4HQP A;  5J5I A;  5AFK A;  2YMD A;  5HEG A;  4QH5 A;  5AFL A;  4ILA A;  2W8F A;  2BJ0 A;  5HCJ A;  5HCM A;  3JAE A;  2YME A;  1UV6 A;  3RQU A;  3JAD A;  3LSV A;  3SIO A;  4B5D A;  2BYQ A;  3PMZ A;  2XQ3 A;  2XYT A;  4LML A;  2W8G A;  5BP0 A;  2XQA A;  5BRX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...