5AFNA

Alpha7-achbp in complex with lobeline and fragment 5
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
205
structure length
205
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
source organism Homo sapiens
total genus 46
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afnA00
4A97A 2BYSA 3UU5A 2BYPA 2C9TA 4TWDA 4HFIA 5HCJA 4DBMA 3UUBA 3ZDHA 2WNCA 4PIRA 2WZYA 2YOEA 3WTOA 4COFA 2XQ3A 3ZDGA 3IGQA 2Y57A 3RQWA 4UM3A 5SYOA 3JADA 4HFBA 2W8GA 2Y58A 4AFGA 1UX2A 4BQTA 3UU8A 4ZK1A 5KE4A 4HFDA 5AFMB 2BG9C 4IL9A 5CO5A 3RIAA 3SIOA 4ALXA 2YMDA 3TLTA 3UU4A 5BRXA 5IUXA 5JMEA 2XQAA 3LSVA 3TLUA 1I9BA 4X5TA 2XQ5A 5L4HA 3C84A 5AFKA 2WNLA 5AFJA 5KZUA 4ZR6A 4WV9A 4Z90A 4HFCA 5HCMA 4ZJTA 4UM3P 3RHWA 4F8HA 3RI5A 3U8LA 3UU6A 3U8NA 2W8FA 3SQ9A 4UXUA 3PMZA 5HEOA 2XQ6A 4AFHA 1UW6A 4UM3S 2XZ5A 5AINA 2BR7A 4ILAA 4TNVA 2YN6A 4ZJSA 2BJ0A 4LMKA 5J0ZA 2Y7YA 5AFNA 4ILCA 4ILBA 2BG9E 4NZBA 4QH5A 4ZRUA 4ZK4A 5LXBA 4ZZBA 5CFBA 5J5HA 5HEGA 2XQ9A 4ZZCA 3SQ6A 3TLVA 3UQ4A 3WTIA 2BYNA 3RIFA 3WTJA 5AFHA 3WTKA 4QH4A 4BFQA 4LMLA 3JAFA 2ZJUA 5TVCA 4NPPA 2PH9A 2X00A 3EHZA 4IREA 4HFEA 3WIPA 4AFTA 3EAMA 5J5FA 4HFHA 2XQ8A 5L4EA 3RQUA 2XNUA 3P50A 2QC1B 3UQ7A 4HQPA 3U8KA 2ZJVA 4UM1A 3WTNA 2Y56A 2XYSA 3U8JA 4QACA 2XNTA 4LMJA 2BG9B 3TLWA 4UY2A 3ZKRA 5HEHA 2Y54A 2XYTA 2XQ7A 4IL4A 4TWHA 3SH1A 4XHEA 2WNJA 5L47A 2BYRA 2PGZA 3WTMA 2BR8A 5FJVA 2BG9A 5J5GA 5LG3A 4Z91A 4TWFA 2BYQA 2XZ6A 2UZ6A 3C79A 3U8MA 1UV6A 4A98A 3GUAA 3JAEA 3TLSA 3UU3A 5HEJA 3T4MA 4EZ1A 5J5IA 2VL0A 3EI0A 2XQ4A 2X00D 3PEOA 5BP0A 4QABA 5AFLA 3WTLA 4XK9A 4B5DA 5BW2A 2WN9A 4TNWA 3P4WA 2XNVA 2YMEA 5HEUA 4QAAA 2YKSA 4QH1A 3WTHA 4FRRA 5AFMA 4D01A
chains in the Genus database with same CATH superfamily
4A97A 2BYSA 3UU5A 2BYPA 2C9TA 4TWDA 4HFIA 5HCJA 4DBMA 3UUBA 3ZDHA 2WNCA 4PIRA 2WZYA 2YOEA 3WTOA 4COFA 2XQ3A 3ZDGA 3IGQA 2Y57A 3RQWA 4UM3A 5SYOA 3JADA 4HFBA 2W8GA 2Y58A 4AFGA 1UX2A 4BQTA 3UU8A 4ZK1A 5KE4A 4HFDA 5AFMB 2BG9C 4IL9A 5CO5A 3RIAA 3SIOA 4ALXA 2YMDA 3TLTA 3UU4A 5BRXA 5IUXA 5JMEA 2XQAA 3LSVA 3TLUA 1I9BA 4X5TA 2XQ5A 5L4HA 3C84A 5AFKA 2WNLA 5AFJA 5KZUA 4ZR6A 4WV9A 4Z90A 4HFCA 5HCMA 4ZJTA 4UM3P 3RHWA 4F8HA 3RI5A 3U8LA 3UU6A 3U8NA 2W8FA 3SQ9A 4UXUA 3PMZA 5HEOA 2XQ6A 4AFHA 1UW6A 4UM3S 2XZ5A 5AINA 2BR7A 4ILAA 4TNVA 2YN6A 4ZJSA 2BJ0A 4LMKA 5J0ZA 2Y7YA 5AFNA 4ILCA 4ILBA 2BG9E 4NZBA 4QH5A 4ZRUA 4ZK4A 5LXBA 4ZZBA 5CFBA 5J5HA 5HEGA 2XQ9A 4ZZCA 3SQ6A 3TLVA 3UQ4A 3WTIA 2BYNA 3RIFA 3WTJA 5AFHA 3WTKA 4QH4A 4BFQA 4LMLA 3JAFA 2ZJUA 5TVCA 4NPPA 2PH9A 2X00A 3EHZA 4IREA 4HFEA 3WIPA 4AFTA 3EAMA 5J5FA 4HFHA 2XQ8A 5L4EA 3RQUA 2XNUA 3P50A 2QC1B 3UQ7A 4HQPA 3U8KA 2ZJVA 4UM1A 3WTNA 2Y56A 2XYSA 3U8JA 4QACA 2XNTA 4LMJA 2BG9B 3TLWA 4UY2A 3ZKRA 5HEHA 2Y54A 2XYTA 2XQ7A 4IL4A 4TWHA 3SH1A 4XHEA 2WNJA 5L47A 2BYRA 2PGZA 3WTMA 2BR8A 5FJVA 2BG9A 5J5GA 5LG3A 4Z91A 4TWFA 2BYQA 2XZ6A 2UZ6A 3C79A 3U8MA 1UV6A 4A98A 3GUAA 3JAEA 3TLSA 3UU3A 5HEJA 3T4MA 4EZ1A 5J5IA 2VL0A 3EI0A 2XQ4A 2X00D 3PEOA 5BP0A 4QABA 5AFLA 3WTLA 4XK9A 4B5DA 5BW2A 2WN9A 4TNWA 3P4WA 2XNVA 2YMEA 5HEUA 4QAAA 2YKSA 4QH1A 3WTHA 4FRRA 5AFMA 4D01A
chains in the Genus database with same CATH topology
4A97A 2BYSA 3UU5A 2BYPA 2C9TA 4TWDA 4HFIA 5HCJA 4DBMA 3UUBA 3ZDHA 2WNCA 4PIRA 2WZYA 2YOEA 3WTOA 4COFA 2XQ3A 3ZDGA 3IGQA 2Y57A 3RQWA 4UM3A 5SYOA 3JADA 4HFBA 2W8GA 2Y58A 4AFGA 1UX2A 4BQTA 3UU8A 4ZK1A 5KE4A 4HFDA 5AFMB 2BG9C 4IL9A 5CO5A 3RIAA 3SIOA 4ALXA 2YMDA 3TLTA 3UU4A 5BRXA 5IUXA 5JMEA 2XQAA 3LSVA 3TLUA 1I9BA 4X5TA 2XQ5A 5L4HA 3C84A 5AFKA 2WNLA 5AFJA 5KZUA 4ZR6A 4WV9A 4Z90A 4HFCA 5HCMA 4ZJTA 4UM3P 3RHWA 4F8HA 3RI5A 3U8LA 3UU6A 3U8NA 2W8FA 3SQ9A 4UXUA 3PMZA 5HEOA 2XQ6A 4AFHA 1UW6A 4UM3S 2XZ5A 5AINA 2BR7A 4ILAA 4TNVA 2YN6A 4ZJSA 2BJ0A 4LMKA 5J0ZA 2Y7YA 5AFNA 4ILCA 4ILBA 2BG9E 4NZBA 4QH5A 4ZRUA 4ZK4A 5LXBA 4ZZBA 5CFBA 5J5HA 5HEGA 2XQ9A 4ZZCA 3SQ6A 3TLVA 3UQ4A 3WTIA 2BYNA 3RIFA 3WTJA 5AFHA 3WTKA 4QH4A 4BFQA 4LMLA 3JAFA 2ZJUA 5TVCA 4NPPA 2PH9A 2X00A 3EHZA 4IREA 4HFEA 3WIPA 4AFTA 3EAMA 5J5FA 4HFHA 2XQ8A 5L4EA 3RQUA 2XNUA 3P50A 2QC1B 3UQ7A 4HQPA 3U8KA 2ZJVA 4UM1A 3WTNA 2Y56A 2XYSA 3U8JA 4QACA 2XNTA 4LMJA 2BG9B 3TLWA 4UY2A 3ZKRA 5HEHA 2Y54A 2XYTA 2XQ7A 4IL4A 4TWHA 3SH1A 4XHEA 2WNJA 5L47A 2BYRA 2PGZA 3WTMA 2BR8A 5FJVA 2BG9A 5J5GA 5LG3A 4Z91A 4TWFA 2BYQA 2XZ6A 2UZ6A 3C79A 3U8MA 1UV6A 4A98A 3GUAA 3JAEA 3TLSA 3UU3A 5HEJA 3T4MA 4EZ1A 5J5IA 2VL0A 3EI0A 2XQ4A 2X00D 3PEOA 5BP0A 4QABA 5AFLA 3WTLA 4XK9A 4B5DA 5BW2A 2WN9A 4TNWA 3P4WA 2XNVA 2YMEA 5HEUA 4QAAA 2YKSA 4QH1A 3WTHA 4FRRA 5AFMA 4D01A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A97 A;  2BYS A;  3UU5 A;  2BYP A;  2C9T A;  4TWD A;  4HFI A;  5HCJ A;  4DBM A;  3UUB A;  3ZDH A;  2WNC A;  4PIR A;  2WZY A;  2YOE A;  3WTO A;  4COF A;  2XQ3 A;  3ZDG A;  3IGQ A;  2Y57 A;  3RQW A;  4UM3 A;  5SYO A;  3JAD A;  4HFB A;  2W8G A;  2Y58 A;  4AFG A;  1UX2 A;  4BQT A;  3UU8 A;  4ZK1 A;  5KE4 A;  4HFD A;  5AFM B;  2BG9 C;  4IL9 A;  5CO5 A;  3RIA A;  3SIO A;  4ALX A;  2YMD A;  3TLT A;  3UU4 A;  5BRX A;  5IUX A;  5JME A;  2XQA A;  3LSV A;  3TLU A;  1I9B A;  4X5T A;  2XQ5 A;  5L4H A;  3C84 A;  5AFK A;  2WNL A;  5AFJ A;  5KZU A;  4ZR6 A;  4WV9 A;  4Z90 A;  4HFC A;  5HCM A;  4ZJT A;  4UM3 P;  3RHW A;  4F8H A;  3RI5 A;  3U8L A;  3UU6 A;  3U8N A;  2W8F A;  3SQ9 A;  4UXU A;  3PMZ A;  5HEO A;  2XQ6 A;  4AFH A;  1UW6 A;  4UM3 S;  2XZ5 A;  5AIN A;  2BR7 A;  4ILA A;  4TNV A;  2YN6 A;  4ZJS A;  2BJ0 A;  4LMK A;  5J0Z A;  2Y7Y A;  5AFN A;  4ILC A;  4ILB A;  2BG9 E;  4NZB A;  4QH5 A;  4ZRU A;  4ZK4 A;  5LXB A;  4ZZB A;  5CFB A;  5J5H A;  5HEG A;  2XQ9 A;  4ZZC A;  3SQ6 A;  3TLV A;  3UQ4 A;  3WTI A;  2BYN A;  3RIF A;  3WTJ A;  5AFH A;  3WTK A;  4QH4 A;  4BFQ A;  4LML A;  3JAF A;  2ZJU A;  5TVC A;  4NPP A;  2PH9 A;  2X00 A;  3EHZ A;  4IRE A;  4HFE A;  3WIP A;  4AFT A;  3EAM A;  5J5F A;  4HFH A;  2XQ8 A;  5L4E A;  3RQU A;  2XNU A;  3P50 A;  2QC1 B;  3UQ7 A;  4HQP A;  3U8K A;  2ZJV A;  4UM1 A;  3WTN A;  2Y56 A;  2XYS A;  3U8J A;  4QAC A;  2XNT A;  4LMJ A;  2BG9 B;  3TLW A;  4UY2 A;  3ZKR A;  5HEH A;  2Y54 A;  2XYT A;  2XQ7 A;  4IL4 A;  4TWH A;  3SH1 A;  4XHE A;  2WNJ A;  5L47 A;  2BYR A;  2PGZ A;  3WTM A;  2BR8 A;  5FJV A;  2BG9 A;  5J5G A;  5LG3 A;  4Z91 A;  4TWF A;  2BYQ A;  2XZ6 A;  2UZ6 A;  3C79 A;  3U8M A;  1UV6 A;  4A98 A;  3GUA A;  3JAE A;  3TLS A;  3UU3 A;  5HEJ A;  3T4M A;  4EZ1 A;  5J5I A;  2VL0 A;  3EI0 A;  2XQ4 A;  2X00 D;  3PEO A;  5BP0 A;  4QAB A;  5AFL A;  3WTL A;  4XK9 A;  4B5D A;  5BW2 A;  2WN9 A;  4TNW A;  3P4W A;  2XNV A;  2YME A;  5HEU A;  4QAA A;  2YKS A;  4QH1 A;  3WTH A;  4FRR A;  5AFM A;  4D01 A; 
#chains in the Genus database with same CATH topology
 4A97 A;  2BYS A;  3UU5 A;  2BYP A;  2C9T A;  4TWD A;  4HFI A;  5HCJ A;  4DBM A;  3UUB A;  3ZDH A;  2WNC A;  4PIR A;  2WZY A;  2YOE A;  3WTO A;  4COF A;  2XQ3 A;  3ZDG A;  3IGQ A;  2Y57 A;  3RQW A;  4UM3 A;  5SYO A;  3JAD A;  4HFB A;  2W8G A;  2Y58 A;  4AFG A;  1UX2 A;  4BQT A;  3UU8 A;  4ZK1 A;  5KE4 A;  4HFD A;  5AFM B;  2BG9 C;  4IL9 A;  5CO5 A;  3RIA A;  3SIO A;  4ALX A;  2YMD A;  3TLT A;  3UU4 A;  5BRX A;  5IUX A;  5JME A;  2XQA A;  3LSV A;  3TLU A;  1I9B A;  4X5T A;  2XQ5 A;  5L4H A;  3C84 A;  5AFK A;  2WNL A;  5AFJ A;  5KZU A;  4ZR6 A;  4WV9 A;  4Z90 A;  4HFC A;  5HCM A;  4ZJT A;  4UM3 P;  3RHW A;  4F8H A;  3RI5 A;  3U8L A;  3UU6 A;  3U8N A;  2W8F A;  3SQ9 A;  4UXU A;  3PMZ A;  5HEO A;  2XQ6 A;  4AFH A;  1UW6 A;  4UM3 S;  2XZ5 A;  5AIN A;  2BR7 A;  4ILA A;  4TNV A;  2YN6 A;  4ZJS A;  2BJ0 A;  4LMK A;  5J0Z A;  2Y7Y A;  5AFN A;  4ILC A;  4ILB A;  2BG9 E;  4NZB A;  4QH5 A;  4ZRU A;  4ZK4 A;  5LXB A;  4ZZB A;  5CFB A;  5J5H A;  5HEG A;  2XQ9 A;  4ZZC A;  3SQ6 A;  3TLV A;  3UQ4 A;  3WTI A;  2BYN A;  3RIF A;  3WTJ A;  5AFH A;  3WTK A;  4QH4 A;  4BFQ A;  4LML A;  3JAF A;  2ZJU A;  5TVC A;  4NPP A;  2PH9 A;  2X00 A;  3EHZ A;  4IRE A;  4HFE A;  3WIP A;  4AFT A;  3EAM A;  5J5F A;  4HFH A;  2XQ8 A;  5L4E A;  3RQU A;  2XNU A;  3P50 A;  2QC1 B;  3UQ7 A;  4HQP A;  3U8K A;  2ZJV A;  4UM1 A;  3WTN A;  2Y56 A;  2XYS A;  3U8J A;  4QAC A;  2XNT A;  4LMJ A;  2BG9 B;  3TLW A;  4UY2 A;  3ZKR A;  5HEH A;  2Y54 A;  2XYT A;  2XQ7 A;  4IL4 A;  4TWH A;  3SH1 A;  4XHE A;  2WNJ A;  5L47 A;  2BYR A;  2PGZ A;  3WTM A;  2BR8 A;  5FJV A;  2BG9 A;  5J5G A;  5LG3 A;  4Z91 A;  4TWF A;  2BYQ A;  2XZ6 A;  2UZ6 A;  3C79 A;  3U8M A;  1UV6 A;  4A98 A;  3GUA A;  3JAE A;  3TLS A;  3UU3 A;  5HEJ A;  3T4M A;  4EZ1 A;  5J5I A;  2VL0 A;  3EI0 A;  2XQ4 A;  2X00 D;  3PEO A;  5BP0 A;  4QAB A;  5AFL A;  3WTL A;  4XK9 A;  4B5D A;  5BW2 A;  2WN9 A;  4TNW A;  3P4W A;  2XNV A;  2YME A;  5HEU A;  4QAA A;  2YKS A;  4QH1 A;  3WTH A;  4FRR A;  5AFM A;  4D01 A; 
#chains in the Genus database with same CATH homology
 4A97 A;  2BYS A;  3UU5 A;  2BYP A;  2C9T A;  4TWD A;  4HFI A;  5HCJ A;  4DBM A;  3UUB A;  3ZDH A;  2WNC A;  4PIR A;  2WZY A;  2YOE A;  3WTO A;  4COF A;  2XQ3 A;  3ZDG A;  3IGQ A;  2Y57 A;  3RQW A;  4UM3 A;  5SYO A;  3JAD A;  4HFB A;  2W8G A;  2Y58 A;  4AFG A;  1UX2 A;  4BQT A;  3UU8 A;  4ZK1 A;  5KE4 A;  4HFD A;  5AFM B;  2BG9 C;  4IL9 A;  5CO5 A;  3RIA A;  3SIO A;  4ALX A;  2YMD A;  3TLT A;  3UU4 A;  5BRX A;  5IUX A;  5JME A;  2XQA A;  3LSV A;  3TLU A;  1I9B A;  4X5T A;  2XQ5 A;  5L4H A;  3C84 A;  5AFK A;  2WNL A;  5AFJ A;  5KZU A;  4ZR6 A;  4WV9 A;  4Z90 A;  4HFC A;  5HCM A;  4ZJT A;  4UM3 P;  3RHW A;  4F8H A;  3RI5 A;  3U8L A;  3UU6 A;  3U8N A;  2W8F A;  3SQ9 A;  4UXU A;  3PMZ A;  5HEO A;  2XQ6 A;  4AFH A;  1UW6 A;  4UM3 S;  2XZ5 A;  5AIN A;  2BR7 A;  4ILA A;  4TNV A;  2YN6 A;  4ZJS A;  2BJ0 A;  4LMK A;  5J0Z A;  2Y7Y A;  5AFN A;  4ILC A;  4ILB A;  2BG9 E;  4NZB A;  4QH5 A;  4ZRU A;  4ZK4 A;  5LXB A;  4ZZB A;  5CFB A;  5J5H A;  5HEG A;  2XQ9 A;  4ZZC A;  3SQ6 A;  3TLV A;  3UQ4 A;  3WTI A;  2BYN A;  3RIF A;  3WTJ A;  5AFH A;  3WTK A;  4QH4 A;  4BFQ A;  4LML A;  3JAF A;  2ZJU A;  5TVC A;  4NPP A;  2PH9 A;  2X00 A;  3EHZ A;  4IRE A;  4HFE A;  3WIP A;  4AFT A;  3EAM A;  5J5F A;  4HFH A;  2XQ8 A;  5L4E A;  3RQU A;  2XNU A;  3P50 A;  2QC1 B;  3UQ7 A;  4HQP A;  3U8K A;  2ZJV A;  4UM1 A;  3WTN A;  2Y56 A;  2XYS A;  3U8J A;  4QAC A;  2XNT A;  4LMJ A;  2BG9 B;  3TLW A;  4UY2 A;  3ZKR A;  5HEH A;  2Y54 A;  2XYT A;  2XQ7 A;  4IL4 A;  4TWH A;  3SH1 A;  4XHE A;  2WNJ A;  5L47 A;  2BYR A;  2PGZ A;  3WTM A;  2BR8 A;  5FJV A;  2BG9 A;  5J5G A;  5LG3 A;  4Z91 A;  4TWF A;  2BYQ A;  2XZ6 A;  2UZ6 A;  3C79 A;  3U8M A;  1UV6 A;  4A98 A;  3GUA A;  3JAE A;  3TLS A;  3UU3 A;  5HEJ A;  3T4M A;  4EZ1 A;  5J5I A;  2VL0 A;  3EI0 A;  2XQ4 A;  2X00 D;  3PEO A;  5BP0 A;  4QAB A;  5AFL A;  3WTL A;  4XK9 A;  4B5D A;  5BW2 A;  2WN9 A;  4TNW A;  3P4W A;  2XNV A;  2YME A;  5HEU A;  4QAA A;  2YKS A;  4QH1 A;  3WTH A;  4FRR A;  5AFM A;  4D01 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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