5AH5A

Crystal structure of the ternary complex of agrobacterium radiobacter k84 agnb2 leurs-trna-leuams
Total Genus 259
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
259
sequence length
816
structure length
789
Chain Sequence
b'QYDHRSRDAFWQQKWDEKRIFDWDPSSPGKKFYVLEMFPYTSGHLHIGHVRNYSMGDTLARMQIARGYSVLHPMGWDSFGLPAENAARKFGTHPAKFTQDAIDSMKRSMMQLGFGYSWANELATCSPTYVLAQQKLFLDLYRKGLIYRDDTYVYWDPVEQTVLAAEQVIDGKGWRSGAAVYKRRTPQWFVDIRSYADRLLDDLESLEGWPTSVRNIQRNWIGRTEGAEVRFLVEASDLTINAFTTRLDTLAGCTFIALAPEHTILDEMRASVKDYCESILVLSSEERSAGAKSGIFTGLMVVNPLNQERVPLYVANYVMPDFGTGAVIGVPDERDADFGALFGLPVRVVSHSLVDGLTSSAAREILIAHLSEKLEGQKSTQYRLQNWSISRQRYWGCPIPIIHCSECGTIPVAEEQLPILLPDHLISEGSGSPLSRDESWMKAKCPQCGGDAARDPDTMDTFVDSSWYFLRYPSPSSPNPIDSSLCNKIAPADVYIGGIEHATLHLIYSRFITKVLHDLGYIEFDEPFVELYNQGMVNDVHGRKQSKSLGNVTDPSVVVQEFGADAVRCYLLFKTTYNAPINWEDSGPQAMRSYLERVCRLFTNNLDRLRSSSAIEICPDDCENEEDREIARQLQLAIGKVTADVERFHFNAAIAAIMSVTNLLYEKGGKASPTVLAGSLRLLVRLLAPFAPHISEELWALSGCNSLVAAEPWPTINERLVQAENIVLPVQINGKLIRTMTIPVNLAEEDILSTVLALPEVRSRLSDRDLKNYRYVPNRIINLVVGLEH'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords LEUCINE--TRNA LIGASE
publication title Structural Characterization of Antibiotic Self-Immunity tRNA Synthetase in Plant Tumour Biocontrol Agent.
pubmed doi rcsb
source organism Agrobacterium radiobacter k84
molecule tags Ligase/rna
total genus 259
structure length 789
sequence length 816
chains with identical sequence B
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2015-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V)
A PF08264 Anticodon_1 Anticodon-binding domain of tRNA
A PF13603 tRNA-synt_1_2 Leucyl-tRNA synthetase, Domain 2
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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