5AMVA

Structural insights into the loss of catalytic competence in pectate lyase at low ph
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
399
structure length
397
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKNVINQAGAGKLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PECTATE LYASE
publication title Structural Insights Into the Loss of Catalytic Competence in Pectate Lyase Activity at Low Ph.
pubmed doi rcsb
source organism Bacillus subtilis
total genus 159
structure length 397
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2015-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 5amvA00
4C2LA 1RWRA 4YZQA 2NZMA 3EQOA 4OJ5A 1O8HA 1OGOX 1HG8A 4NK8A 2PECA 3B8YA 1O8MA 2O1DA 1O88A 2INVA 1O8KA 4AVZA 2NTQA 4XLFA 2NTBA 5C1CA 1OFMA 1WMRA 4YZ0A 4I84A 1OFLA 3JURA 4OJPA 2NSTA 1BHEA 1OOCA 1BN8A 2Z8GA 4EW9A 4XOTA 2NTPA 1H80A 4XORA 4W8RA 4YZAA 3GQ8A 2PYGA 4U4BA 2X85A 1OGMX 1IDJA 3UW0A 4XR6A 2UVEA 4XLAA 1KCDA 1DBOA 4XLHA 3VSTA 2INUA 5C1EA 2X3HA 1XG2A 1IB4A 2EWEA 4YEJA 5AMVA 2VBMA 2X6WA 2O04A 3LMWA 4XOPA 1GQ8A 2ODLA 1QCXA 2O17A 2VJIA 2BSPA 2VJJA 3B4NA 3GQAA 3GQ9A 3ZPPA 4OZYA 1CZFA 1O8IA 1PLUA 2QXZA 4OJLA 4XL9A 3EQNA 1EE6A 4MR0A 2O0VA 1PE9A 1QJVA 2NSPA 4XKVA 4XKWA 1O8FA 4XN3A 1O8EA 2NT9A 1VBLA 2O0WA 4YZXA 4MXNA 4XLEA 1RU4A 4XQFA 4W8TA 4URRA 2PYHA 3GRHA 4U49A 4YELA 1KTWA 3T9GA 1AIRA 4Z05A 2X6XA 1O8DA 3B90A 1JTAA 2X6YA 3VSVA 4XLCA 2UVFA 4OZZA 1O8GA 4XONA 2IQ7A 3VMVA 1IA5A 4Z03A 1JRGA 2VBKA 4OJOA 4W8QA 3WWGA 1RMGA 2QX3A 1PXZA 1O8JA 2VBEA 3GQ7A 3ZSCA 4Z06A 1DBGA 2NT6A 3FY3A 1NHCA 1K5CA 3SUCA 4XNFA 3VMWA 4PMHA 4XMYA 2QY1A 3VSUA 4OJ6A 1X0CA 4XM3A 1IDKA 1KCCA 4W8SA 1O8LA 4NK6A 4HWVA 3KRGA 4XN0A
chains in the Genus database with same CATH superfamily
4C2LA 1RWRA 4YZQA 2NZMA 3EQOA 4OJ5A 4YEIA 2XT4A 1TYVA 1O8HA 1OGOX 1HG8A 4NK8A 2VFMA 2PECA 3B8YA 1O8MA 1LM1A 4KH3A 4V02C 2O1DA 4YC5A 1O88A 2INVA 1O8KA 4AVZA 2NTQA 4XLFA 5DNSA 2NTBA 3P4GA 5C1CA 1OFMA 1QRCA 1WMRA 4I84A 1OFLA 3JURA 4OJPA 4YZ0A 2NSTA 1BHEA 3N90A 1OOCA 1BN8A 2Z8GA 4EW9A 4XOTA 2NTPA 1H80A 4XN0A 4XORA 2B0RA 1QQ1A 3PSSA 3LJYA 4W8RA 2IOUG 4YZAA 3GQ8A 2PYGA 4U4BA 4JRAC 2X85A 1OGMX 1IDJA 3UW0A 4XR6A 2UVEA 4XLAA 4OM9A 1KCDA 1OFDA 1DBOA 4XLHA 3VSTA 1TYUA 2INUA 3DU1X 5C1EA 2X3HA 1K4ZA 1XG2A 2QYUA 1IB4A 2EWEA 4YEJA 5AMVA 2VBMA 2X6WA 3SY2A 1TYXA 2O04A 3LMWA 4XOPA 1GQ8A 1CLWA 2ODLA 3PSZA 1QCXA 2O17A 2VJIA 3AK5A 2BSPA 2VJJA 3B4NA 3GQAA 3GQ9A 3ZPPA 4OZYA 1L1IA 1CZFA 1O8IA 1PLUA 2QXZA 2W7ZA 4OJLA 4XL9A 3EQNA 1EE6A 3TH0A 2F3LA 4MR0A 2O0VA 2XTWA 1PE9A 1QJVA 2XTYA 2NSPA 4XKVA 2VFNA 3N6ZA 4XKWA 2BM6A 5JMCB 4YFOA 2QZAA 1O8FA 4XN3A 1QRBA 2XTXA 1HF2A 1O8EA 2NT9A 1KQ5A 1VBLA 2YUHA 2O0WA 4YZXA 4MXNA 1EA0A 4XLEA 4OPWA 2BM5A 1QA1A 1RU4A 1OFEA 4XQFA 1K8FA 4W8TA 4YCQA 4URRA 1EZGA 1TYWA 2PYHA 3GRHA 2VFQA 4U49A 2VFPA 4YELA 1KTWA 2O6WA 3T9GA 1AIRA 4Z05A 2X6XA 3NB2A 1O8DA 3B90A 1JTAA 2X6YA 3JX8A 4XLCA 2UVFA 4OZZA 1O8GA 4XONA 3VSVA 3SZEA 2IQ7A 2BM4A 3VMVA 1IA5A 4Z03A 1JRGA 3BH7B 2VBKA 4OJOA 1LLZA 3SQVA 2XC1A 4W8QA 3WWGA 1RMGA 2QX3A 1PXZA 1O8JA 2VBEA 3GQ7A 3ZSCA 4Z06A 1DBGA 3RIQA 2NT6A 3FY3A 1NHCA 1K5CA 3SUCA 1TSPA 2XT2A 3ML3A 4XNFA 3VMWA 4YDTA 4PMHA 4XMYA 2QY1A 3LYCA 4OJ6A 1X0CA 4XM3A 1IDKA 3VSUA 1KCCA 1QA3A 1WXRA 3H09A 2BX6A 2G0YA 2J8IA 1LLWA 2J8KA 2V5IA 1QA2A 4W8SA 1O8LA 4NK6A 3SYJA 4HWVA 3BH6B 2VFOA 3KRGA 5JLVC 3PETA 1DABA 3NAWA 2BM7A
chains in the Genus database with same CATH topology
4C2LA 1RWRA 4YZQA 2NZMA 3EQOA 4OJ5A 1O8HA 1OGOX 1HG8A 4NK8A 2PECA 3B8YA 1O8MA 2O1DA 1O88A 2INVA 1O8KA 4AVZA 2NTQA 4XLFA 2NTBA 5C1CA 1OFMA 1WMRA 4YZ0A 4I84A 1OFLA 3JURA 4OJPA 2NSTA 1BHEA 1OOCA 1BN8A 2Z8GA 4EW9A 4XOTA 2NTPA 1H80A 4XORA 4W8RA 4YZAA 3GQ8A 2PYGA 4U4BA 2X85A 1OGMX 1IDJA 3UW0A 4XR6A 2UVEA 4XLAA 1KCDA 1DBOA 4XLHA 3VSTA 2INUA 5C1EA 2X3HA 1XG2A 1IB4A 2EWEA 4YEJA 5AMVA 2VBMA 2X6WA 2O04A 3LMWA 4XOPA 1GQ8A 2ODLA 1QCXA 2O17A 2VJIA 2BSPA 2VJJA 3B4NA 3GQAA 3GQ9A 3ZPPA 4OZYA 1CZFA 1O8IA 1PLUA 2QXZA 4OJLA 4XL9A 3EQNA 1EE6A 4MR0A 2O0VA 1PE9A 1QJVA 2NSPA 4XKVA 4XKWA 1O8FA 4XN3A 1O8EA 2NT9A 1VBLA 2O0WA 4YZXA 4MXNA 4XLEA 1RU4A 4XQFA 4W8TA 4URRA 2PYHA 3GRHA 4U49A 4YELA 1KTWA 3T9GA 1AIRA 4Z05A 2X6XA 1O8DA 3B90A 1JTAA 2X6YA 3VSVA 4XLCA 2UVFA 4OZZA 1O8GA 4XONA 2IQ7A 3VMVA 1IA5A 4Z03A 1JRGA 2VBKA 4OJOA 4W8QA 3WWGA 1RMGA 2QX3A 1PXZA 1O8JA 2VBEA 3GQ7A 3ZSCA 4Z06A 1DBGA 2NT6A 3FY3A 1NHCA 1K5CA 3SUCA 4XNFA 3VMWA 4PMHA 4XMYA 2QY1A 3VSUA 4OJ6A 1X0CA 4XM3A 1IDKA 1KCCA 4W8SA 1O8LA 4NK6A 4HWVA 3KRGA 4XN0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C2L A;  1RWR A;  4YZQ A;  2NZM A;  3EQO A;  4OJ5 A;  1O8H A;  1OGO X;  1HG8 A;  4NK8 A;  2PEC A;  3B8Y A;  1O8M A;  2O1D A;  1O88 A;  2INV A;  1O8K A;  4AVZ A;  2NTQ A;  4XLF A;  2NTB A;  5C1C A;  1OFM A;  1WMR A;  4YZ0 A;  4I84 A;  1OFL A;  3JUR A;  4OJP A;  2NST A;  1BHE A;  1OOC A;  1BN8 A;  2Z8G A;  4EW9 A;  4XOT A;  2NTP A;  1H80 A;  4XOR A;  4W8R A;  4YZA A;  3GQ8 A;  2PYG A;  4U4B A;  2X85 A;  1OGM X;  1IDJ A;  3UW0 A;  4XR6 A;  2UVE A;  4XLA A;  1KCD A;  1DBO A;  4XLH A;  3VST A;  2INU A;  5C1E A;  2X3H A;  1XG2 A;  1IB4 A;  2EWE A;  4YEJ A;  5AMV A;  2VBM A;  2X6W A;  2O04 A;  3LMW A;  4XOP A;  1GQ8 A;  2ODL A;  1QCX A;  2O17 A;  2VJI A;  2BSP A;  2VJJ A;  3B4N A;  3GQA A;  3GQ9 A;  3ZPP A;  4OZY A;  1CZF A;  1O8I A;  1PLU A;  2QXZ A;  4OJL A;  4XL9 A;  3EQN A;  1EE6 A;  4MR0 A;  2O0V A;  1PE9 A;  1QJV A;  2NSP A;  4XKV A;  4XKW A;  1O8F A;  4XN3 A;  1O8E A;  2NT9 A;  1VBL A;  2O0W A;  4YZX A;  4MXN A;  4XLE A;  1RU4 A;  4XQF A;  4W8T A;  4URR A;  2PYH A;  3GRH A;  4U49 A;  4YEL A;  1KTW A;  3T9G A;  1AIR A;  4Z05 A;  2X6X A;  1O8D A;  3B90 A;  1JTA A;  2X6Y A;  3VSV A;  4XLC A;  2UVF A;  4OZZ A;  1O8G A;  4XON A;  2IQ7 A;  3VMV A;  1IA5 A;  4Z03 A;  1JRG A;  2VBK A;  4OJO A;  4W8Q A;  3WWG A;  1RMG A;  2QX3 A;  1PXZ A;  1O8J A;  2VBE A;  3GQ7 A;  3ZSC A;  4Z06 A;  1DBG A;  2NT6 A;  3FY3 A;  1NHC A;  1K5C A;  3SUC A;  4XNF A;  3VMW A;  4PMH A;  4XMY A;  2QY1 A;  3VSU A;  4OJ6 A;  1X0C A;  4XM3 A;  1IDK A;  1KCC A;  4W8S A;  1O8L A;  4NK6 A;  4HWV A;  3KRG A;  4XN0 A; 
#chains in the Genus database with same CATH topology
 4C2L A;  1RWR A;  4YZQ A;  2NZM A;  3EQO A;  4OJ5 A;  4YEI A;  2XT4 A;  1TYV A;  1O8H A;  1OGO X;  1HG8 A;  4NK8 A;  2VFM A;  2PEC A;  3B8Y A;  1O8M A;  1LM1 A;  4KH3 A;  4V02 C;  2O1D A;  4YC5 A;  1O88 A;  2INV A;  1O8K A;  4AVZ A;  2NTQ A;  4XLF A;  5DNS A;  2NTB A;  3P4G A;  5C1C A;  1OFM A;  1QRC A;  1WMR A;  4I84 A;  1OFL A;  3JUR A;  4OJP A;  4YZ0 A;  2NST A;  1BHE A;  3N90 A;  1OOC A;  1BN8 A;  2Z8G A;  4EW9 A;  4XOT A;  2NTP A;  1H80 A;  4XN0 A;  4XOR A;  2B0R A;  1QQ1 A;  3PSS A;  3LJY A;  4W8R A;  2IOU G;  4YZA A;  3GQ8 A;  2PYG A;  4U4B A;  4JRA C;  2X85 A;  1OGM X;  1IDJ A;  3UW0 A;  4XR6 A;  2UVE A;  4XLA A;  4OM9 A;  1KCD A;  1OFD A;  1DBO A;  4XLH A;  3VST A;  1TYU A;  2INU A;  3DU1 X;  5C1E A;  2X3H A;  1K4Z A;  1XG2 A;  2QYU A;  1IB4 A;  2EWE A;  4YEJ A;  5AMV A;  2VBM A;  2X6W A;  3SY2 A;  1TYX A;  2O04 A;  3LMW A;  4XOP A;  1GQ8 A;  1CLW A;  2ODL A;  3PSZ A;  1QCX A;  2O17 A;  2VJI A;  3AK5 A;  2BSP A;  2VJJ A;  3B4N A;  3GQA A;  3GQ9 A;  3ZPP A;  4OZY A;  1L1I A;  1CZF A;  1O8I A;  1PLU A;  2QXZ A;  2W7Z A;  4OJL A;  4XL9 A;  3EQN A;  1EE6 A;  3TH0 A;  2F3L A;  4MR0 A;  2O0V A;  2XTW A;  1PE9 A;  1QJV A;  2XTY A;  2NSP A;  4XKV A;  2VFN A;  3N6Z A;  4XKW A;  2BM6 A;  5JMC B;  4YFO A;  2QZA A;  1O8F A;  4XN3 A;  1QRB A;  2XTX A;  1HF2 A;  1O8E A;  2NT9 A;  1KQ5 A;  1VBL A;  2YUH A;  2O0W A;  4YZX A;  4MXN A;  1EA0 A;  4XLE A;  4OPW A;  2BM5 A;  1QA1 A;  1RU4 A;  1OFE A;  4XQF A;  1K8F A;  4W8T A;  4YCQ A;  4URR A;  1EZG A;  1TYW A;  2PYH A;  3GRH A;  2VFQ A;  4U49 A;  2VFP A;  4YEL A;  1KTW A;  2O6W A;  3T9G A;  1AIR A;  4Z05 A;  2X6X A;  3NB2 A;  1O8D A;  3B90 A;  1JTA A;  2X6Y A;  3JX8 A;  4XLC A;  2UVF A;  4OZZ A;  1O8G A;  4XON A;  3VSV A;  3SZE A;  2IQ7 A;  2BM4 A;  3VMV A;  1IA5 A;  4Z03 A;  1JRG A;  3BH7 B;  2VBK A;  4OJO A;  1LLZ A;  3SQV A;  2XC1 A;  4W8Q A;  3WWG A;  1RMG A;  2QX3 A;  1PXZ A;  1O8J A;  2VBE A;  3GQ7 A;  3ZSC A;  4Z06 A;  1DBG A;  3RIQ A;  2NT6 A;  3FY3 A;  1NHC A;  1K5C A;  3SUC A;  1TSP A;  2XT2 A;  3ML3 A;  4XNF A;  3VMW A;  4YDT A;  4PMH A;  4XMY A;  2QY1 A;  3LYC A;  4OJ6 A;  1X0C A;  4XM3 A;  1IDK A;  3VSU A;  1KCC A;  1QA3 A;  1WXR A;  3H09 A;  2BX6 A;  2G0Y A;  2J8I A;  1LLW A;  2J8K A;  2V5I A;  1QA2 A;  4W8S A;  1O8L A;  4NK6 A;  3SYJ A;  4HWV A;  3BH6 B;  2VFO A;  3KRG A;  5JLV C;  3PET A;  1DAB A;  3NAW A;  2BM7 A; 
#chains in the Genus database with same CATH homology
 4C2L A;  1RWR A;  4YZQ A;  2NZM A;  3EQO A;  4OJ5 A;  1O8H A;  1OGO X;  1HG8 A;  4NK8 A;  2PEC A;  3B8Y A;  1O8M A;  2O1D A;  1O88 A;  2INV A;  1O8K A;  4AVZ A;  2NTQ A;  4XLF A;  2NTB A;  5C1C A;  1OFM A;  1WMR A;  4YZ0 A;  4I84 A;  1OFL A;  3JUR A;  4OJP A;  2NST A;  1BHE A;  1OOC A;  1BN8 A;  2Z8G A;  4EW9 A;  4XOT A;  2NTP A;  1H80 A;  4XOR A;  4W8R A;  4YZA A;  3GQ8 A;  2PYG A;  4U4B A;  2X85 A;  1OGM X;  1IDJ A;  3UW0 A;  4XR6 A;  2UVE A;  4XLA A;  1KCD A;  1DBO A;  4XLH A;  3VST A;  2INU A;  5C1E A;  2X3H A;  1XG2 A;  1IB4 A;  2EWE A;  4YEJ A;  5AMV A;  2VBM A;  2X6W A;  2O04 A;  3LMW A;  4XOP A;  1GQ8 A;  2ODL A;  1QCX A;  2O17 A;  2VJI A;  2BSP A;  2VJJ A;  3B4N A;  3GQA A;  3GQ9 A;  3ZPP A;  4OZY A;  1CZF A;  1O8I A;  1PLU A;  2QXZ A;  4OJL A;  4XL9 A;  3EQN A;  1EE6 A;  4MR0 A;  2O0V A;  1PE9 A;  1QJV A;  2NSP A;  4XKV A;  4XKW A;  1O8F A;  4XN3 A;  1O8E A;  2NT9 A;  1VBL A;  2O0W A;  4YZX A;  4MXN A;  4XLE A;  1RU4 A;  4XQF A;  4W8T A;  4URR A;  2PYH A;  3GRH A;  4U49 A;  4YEL A;  1KTW A;  3T9G A;  1AIR A;  4Z05 A;  2X6X A;  1O8D A;  3B90 A;  1JTA A;  2X6Y A;  3VSV A;  4XLC A;  2UVF A;  4OZZ A;  1O8G A;  4XON A;  2IQ7 A;  3VMV A;  1IA5 A;  4Z03 A;  1JRG A;  2VBK A;  4OJO A;  4W8Q A;  3WWG A;  1RMG A;  2QX3 A;  1PXZ A;  1O8J A;  2VBE A;  3GQ7 A;  3ZSC A;  4Z06 A;  1DBG A;  2NT6 A;  3FY3 A;  1NHC A;  1K5C A;  3SUC A;  4XNF A;  3VMW A;  4PMH A;  4XMY A;  2QY1 A;  3VSU A;  4OJ6 A;  1X0C A;  4XM3 A;  1IDK A;  1KCC A;  4W8S A;  1O8L A;  4NK6 A;  4HWV A;  3KRG A;  4XN0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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