5AV7A

Crystal structure of calsepa lectin in complex with bisected glycan
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
150
structure length
141
Chain Sequence
VPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANEIVGFLGRSGYYVDAIGTYNRH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Lectin
publication title Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
pubmed doi rcsb
source organism Calystegia sepium
total genus 25
structure length 141
sequence length 150
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 5av7A00
1UGXA 1XXQA 3VZGA 1OUWA 4AKCA 4R6QA 1WS5C 1WS5A 1KU8A 1JOTA 5JM1A 3R50A 1C3MA 2BN0A 1WS4A 3MIVA 2GUXA 2NU5A 3MIUA 5EXGA 1C3KA 3O44A 3LLZA 4AKBA 4PIUA 1UH0A 4PITA 1UGWA 5J50A 1VBOA 3WOBA 4AK4A 1C3NA 2BMYA 3VZFA 1M26A 2GUCA 3AQGA 3LL0A 1TOQA 3LM1A 1WS4C 1X1VA 4DDNA 4MQ0A 1ZGRA 4PIFA 4R6OA 1UGYA 4WOGA 1JACA 1PXDA 3VY7A 1ZGSA 1UGWC 3LL1A 3LL2A 4AKDA 1XXRA 1TP8A 3LLYA 2GUEA 2BMZA 2GUDA 5BN6E 3R51A 4PIKA 1UGYC 2GTYA 5J51A 2HYQA 1J4UA 2NUOA 1J4TA 4R6PA 5J4TA 4R6RA 1VBPA 1XEZA 5AV7A 3LKYA 1KUJA 3WOCA 2JZ4A 3VZEA 4GX7A 5J4XA 4R6NA 3VY6A 3MITA 2HYRA 3APAA 3P8SA 1J4SA 1UH1A 3R52A
chains in the Genus database with same CATH superfamily
1UGXA 1XXQA 3VZGA 4ARXA 1OUWA 4AKCA 4R6QA 1I5PA 1WS5C 1WS5A 1KU8A 1JOTA 5JM1A 3R50A 1C3MA 2BN0A 1WS4A 3MIVA 2GUXA 2NU5A 3MIUA 5EXGA 4D8MA 1C3KA 3O44A 1CIYA 3LLZA 4AKBA 4PIUA 1UH0A 1JI6A 4PITA 1UGWA 5J50A 4QX0A 4QX1A 4QX2A 1VBOA 3WOBA 4AK4A 1C3NA 2BMYA 3VZFA 1M26A 2GUCA 3AQGA 3LL0A 1TOQA 3LM1A 1WS4C 1X1VA 4DDNA 4MQ0A 1ZGRA 1W99A 4PIFA 4R6OA 4MOAA 1UGYA 4WOGA 1JACA 1PXDA 3VY7A 4W8JA 1ZGSA 1UGWC 3LL1A 3LL2A 4AKDA 1XXRA 1TP8A 3LLYA 2GUEA 1DLCA 2BMZA 2GUDA 5BN6E 3R51A 4PIKA 1VMOA 1UGYC 2GTYA 5J51A 2HYQA 1J4UA 2NUOA 1J4TA 4R6PA 5J4TA 3TOWA 4R6RA 1VBPA 1XEZA 5AV7A 3LKYA 2QP2A 1KUJA 3WOCA 2C9KA 2JZ4A 3VZEA 3EB7A 4GX7A 5J4XA 4R6NA 3VY6A 3MITA 2HYRA 3APAA 4QX3A 3P8SA 1J4SA 1UH1A 4ARYA 3R52A
chains in the Genus database with same CATH topology
1UGXA 1XXQA 3VZGA 1OUWA 4AKCA 4R6QA 1WS5C 1WS5A 1KU8A 1JOTA 5JM1A 3R50A 1C3MA 2BN0A 1WS4A 3MIVA 2GUXA 2NU5A 3MIUA 5EXGA 1C3KA 3O44A 3LLZA 4AKBA 4PIUA 1UH0A 4PITA 1UGWA 5J50A 1VBOA 3WOBA 4AK4A 1C3NA 2BMYA 3VZFA 1M26A 2GUCA 3AQGA 3LL0A 1TOQA 3LM1A 1WS4C 1X1VA 4DDNA 4MQ0A 1ZGRA 4PIFA 4R6OA 1UGYA 4WOGA 1JACA 1PXDA 3VY7A 1ZGSA 1UGWC 3LL1A 3LL2A 4AKDA 1XXRA 1TP8A 3LLYA 2GUEA 2BMZA 2GUDA 5BN6E 3R51A 4PIKA 1UGYC 2GTYA 5J51A 2HYQA 1J4UA 2NUOA 1J4TA 4R6PA 5J4TA 4R6RA 1VBPA 1XEZA 5AV7A 3LKYA 1KUJA 3WOCA 2JZ4A 3VZEA 4GX7A 5J4XA 4R6NA 3VY6A 3MITA 2HYRA 3APAA 3P8SA 1J4SA 1UH1A 3R52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGX A;  1XXQ A;  3VZG A;  1OUW A;  4AKC A;  4R6Q A;  1WS5 C;  1WS5 A;  1KU8 A;  1JOT A;  5JM1 A;  3R50 A;  1C3M A;  2BN0 A;  1WS4 A;  3MIV A;  2GUX A;  2NU5 A;  3MIU A;  5EXG A;  1C3K A;  3O44 A;  3LLZ A;  4AKB A;  4PIU A;  1UH0 A;  4PIT A;  1UGW A;  5J50 A;  1VBO A;  3WOB A;  4AK4 A;  1C3N A;  2BMY A;  3VZF A;  1M26 A;  2GUC A;  3AQG A;  3LL0 A;  1TOQ A;  3LM1 A;  1WS4 C;  1X1V A;  4DDN A;  4MQ0 A;  1ZGR A;  4PIF A;  4R6O A;  1UGY A;  4WOG A;  1JAC A;  1PXD A;  3VY7 A;  1ZGS A;  1UGW C;  3LL1 A;  3LL2 A;  4AKD A;  1XXR A;  1TP8 A;  3LLY A;  2GUE A;  2BMZ A;  2GUD A;  5BN6 E;  3R51 A;  4PIK A;  1UGY C;  2GTY A;  5J51 A;  2HYQ A;  1J4U A;  2NUO A;  1J4T A;  4R6P A;  5J4T A;  4R6R A;  1VBP A;  1XEZ A;  5AV7 A;  3LKY A;  1KUJ A;  3WOC A;  2JZ4 A;  3VZE A;  4GX7 A;  5J4X A;  4R6N A;  3VY6 A;  3MIT A;  2HYR A;  3APA A;  3P8S A;  1J4S A;  1UH1 A;  3R52 A; 
#chains in the Genus database with same CATH topology
 1UGX A;  1XXQ A;  3VZG A;  4ARX A;  1OUW A;  4AKC A;  4R6Q A;  1I5P A;  1WS5 C;  1WS5 A;  1KU8 A;  1JOT A;  5JM1 A;  3R50 A;  1C3M A;  2BN0 A;  1WS4 A;  3MIV A;  2GUX A;  2NU5 A;  3MIU A;  5EXG A;  4D8M A;  1C3K A;  3O44 A;  1CIY A;  3LLZ A;  4AKB A;  4PIU A;  1UH0 A;  1JI6 A;  4PIT A;  1UGW A;  5J50 A;  4QX0 A;  4QX1 A;  4QX2 A;  1VBO A;  3WOB A;  4AK4 A;  1C3N A;  2BMY A;  3VZF A;  1M26 A;  2GUC A;  3AQG A;  3LL0 A;  1TOQ A;  3LM1 A;  1WS4 C;  1X1V A;  4DDN A;  4MQ0 A;  1ZGR A;  1W99 A;  4PIF A;  4R6O A;  4MOA A;  1UGY A;  4WOG A;  1JAC A;  1PXD A;  3VY7 A;  4W8J A;  1ZGS A;  1UGW C;  3LL1 A;  3LL2 A;  4AKD A;  1XXR A;  1TP8 A;  3LLY A;  2GUE A;  1DLC A;  2BMZ A;  2GUD A;  5BN6 E;  3R51 A;  4PIK A;  1VMO A;  1UGY C;  2GTY A;  5J51 A;  2HYQ A;  1J4U A;  2NUO A;  1J4T A;  4R6P A;  5J4T A;  3TOW A;  4R6R A;  1VBP A;  1XEZ A;  5AV7 A;  3LKY A;  2QP2 A;  1KUJ A;  3WOC A;  2C9K A;  2JZ4 A;  3VZE A;  3EB7 A;  4GX7 A;  5J4X A;  4R6N A;  3VY6 A;  3MIT A;  2HYR A;  3APA A;  4QX3 A;  3P8S A;  1J4S A;  1UH1 A;  4ARY A;  3R52 A; 
#chains in the Genus database with same CATH homology
 1UGX A;  1XXQ A;  3VZG A;  1OUW A;  4AKC A;  4R6Q A;  1WS5 C;  1WS5 A;  1KU8 A;  1JOT A;  5JM1 A;  3R50 A;  1C3M A;  2BN0 A;  1WS4 A;  3MIV A;  2GUX A;  2NU5 A;  3MIU A;  5EXG A;  1C3K A;  3O44 A;  3LLZ A;  4AKB A;  4PIU A;  1UH0 A;  4PIT A;  1UGW A;  5J50 A;  1VBO A;  3WOB A;  4AK4 A;  1C3N A;  2BMY A;  3VZF A;  1M26 A;  2GUC A;  3AQG A;  3LL0 A;  1TOQ A;  3LM1 A;  1WS4 C;  1X1V A;  4DDN A;  4MQ0 A;  1ZGR A;  4PIF A;  4R6O A;  1UGY A;  4WOG A;  1JAC A;  1PXD A;  3VY7 A;  1ZGS A;  1UGW C;  3LL1 A;  3LL2 A;  4AKD A;  1XXR A;  1TP8 A;  3LLY A;  2GUE A;  2BMZ A;  2GUD A;  5BN6 E;  3R51 A;  4PIK A;  1UGY C;  2GTY A;  5J51 A;  2HYQ A;  1J4U A;  2NUO A;  1J4T A;  4R6P A;  5J4T A;  4R6R A;  1VBP A;  1XEZ A;  5AV7 A;  3LKY A;  1KUJ A;  3WOC A;  2JZ4 A;  3VZE A;  4GX7 A;  5J4X A;  4R6N A;  3VY6 A;  3MIT A;  2HYR A;  3APA A;  3P8S A;  1J4S A;  1UH1 A;  3R52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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