5B5TA

Crystal structure of escherichia coli gamma-glutamyltranspeptidase in complex with peptidyl phosphonate inhibitor 1b
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
349
structure length
349
Chain Sequence
DVFHPVRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Gamma-glutamyltranspeptidase large chain
publication title Phosphonate-based irreversible inhibitors of human gamma-glutamyl transpeptidase (GGT). GGsTop is a non-toxic and highly selective inhibitor with critical electrostatic interaction with an active-site residue Lys562 for enhanced inhibitory activity
pubmed doi rcsb
source organism Escherichia coli (strain k12)
total genus 103
structure length 349
sequence length 349
chains with identical sequence C
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2016-05-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5b5tA02
2Z8KA 2Z8IA 4ZBKA 3A75A 2QMCA 4ZCGA 2QM6A 3FNMA 2NQOA 2Z8JA 2DBUA 3WHRA 2E0YA 4GDXA 2DBXA 4GG2A 2E0XA 3WHSA 5B5TA 2DBWA 2V36A 4OTUA 4Z9OA 4ZC6A 3WHQA 5BPKA 4OTTA 2DG5A
chains in the Genus database with same CATH superfamily
2EFHA 2Z8KA 4FIPB 5IIUA 3BPJA 5GIPA 4N0FD 4DM0A 2DYOA 5IJEA 5DBYA 2QMCA 4ZCGA 2QM6A 5ID7A 2BXIA 1MUHA 2OT3A 5D7GA 4K2CA 4FK5B 3LU6A 1LOTA 3B9MA 1TXUA 4HGKA 3WHRA 1KW2A 4ZBRA 2AJEA 1J78A 2ROHA 2YDFA 3A73A 1MM8A 2BXOA 5IJ5A 1SB0A 2BXGA 3NMUA 2E0XA 2XVVA 5B5TA 5IJFA 4M70B 5DQFA 4NAWB 4F5UA 4ZUXV 4D7XA 2V36A 4LA0A 4N3ZA 4OT2A 4PO0A 1HK2A 3NVKA 4OTUA 4Z9OA 4BKEA 3W1SA 5IFOA 3KIKA 2EFDA 4F5TA 1E7IA 1J7EA 2BXNA 4LB2A 2I30A 3NVMA 4L9QA 4ZBKA 3A75A 4OR0A 2BXAA 1GNJA 3FNMA 1MIYA 2NNWA 5GHKA 1HA2A 2XW0A 3TDLA 2Z8JA 4Z69A 4W4UB 2XSIA 2LQIA 2EFCA 2E0YA 4ZBQA 2EFEA 3ECPA 2BXBA 2LOQA 1E7CA 3ICXA 4GDLB 2VDBA 3LU8A 1MUSA 4GG2A 1E7EA 3MHSB 3V03A 3WHSA 1E7HA 3NVIA 4GDKB 3VQIA 4IW1A 1KXPD 1O9XA 3MHHB 2QHBA 1VFIA 1VZSA 3GQXA 2K0NA 4J2VA 3SQJA 4C31B 4BY9C 1AO6A 2CKXA 2KWFA 3B9LA 4OTTA 2BXMA 3UIVA 1UORA 1E7BA 1HK1A 3V09A 4DHXB 3SIVB 2Z8IA 2JUHA 4HGMB 2BXFA 1HK4A 1BKEA 1FOUA 1NT2B 2NQOA 5HOZA 4F5SA 2XVUA 1HK3A 2VUFA 2DBUA 3V08A 1LNSA 3GQUA 2LXTA 1IJGA 1BM0A 2LQHA 5IIXA 2BX8A 1GNIA 2XW1A 3KJLA 1HK5A 3FWCC 4MBEC 4FJCB 4G03A 4L9KA 4LUHA 3M99C 4L8UA 1JNBA 3G9KD 3H3AA 1BJ5A 4S1YA 4ZC6A 2BXKA 3H37A 1MIWA 2BXCA 3SIUB 4LB9A 2DG5A 4F5VA 1E7GA 2XMOA 2BXHA 3PLAA 2LXSA 2OZBB 2XVWA 2DYMA 2BXDA 4LUFA 1TF0A 2BXLA 1E7FA 4I9OA 4IW2A 5IIHA 1N5UA 1H5WA 2AGHB 2VUEA 4G01A 2BXQA 3LU7A 1E7AA 2KBZA 4TQ0A 3CX9A 2BXEA 4GDXA 3FWBC 1KDXA 2DBXA 4WA6B 4EMXA 2BXPA 5ID9A 1MA9A 4N0UD 2DBWA 5GIOA 4JK4A 3JQZA 4K71A 1H9ZA 4TQ1A 1E78A 1MIVA 2I2ZA 3GA9L 2GUTA 3WHQA 4E99A 5BPKA 2XVQA 3JRYA 5GINA 4G04A 5FUOA
chains in the Genus database with same CATH topology
2EFHA 2Z8KA 4FIPB 5IIUA 5GIPA 4N0FD 2DYOA 5IJEA 5DBYA 2QMCA 4ZCGA 2QM6A 5ID7A 2BXIA 2OT3A 5D7GA 4K2CA 4FK5B 3LU6A 1LOTA 3B9MA 1TXUA 4HGKA 3WHRA 1KW2A 4ZBRA 2AJEA 1J78A 2ROHA 2YDFA 3A73A 2BXOA 5IJ5A 2BXGA 3NMUA 2E0XA 2XVVA 5B5TA 5IJFA 4M70B 5DQFA 4NAWB 4F5UA 4ZUXV 3NVKA 2V36A 4LA0A 4N3ZA 4OT2A 4PO0A 1HK2A 4OTUA 4Z9OA 4BKEA 3W1SA 5IFOA 3KIKA 2EFDA 4F5TA 1E7IA 1J7EA 2BXNA 4LB2A 2I30A 3NVMA 4L9QA 4ZBKA 3A75A 4OR0A 2BXAA 1GNJA 3FNMA 1MIYA 2NNWA 5GHKA 1HA2A 2XW0A 3TDLA 2Z8JA 4Z69A 4W4UB 2XSIA 2EFCA 2E0YA 4ZBQA 2EFEA 2BXBA 2LOQA 1E7CA 3ICXA 4GDLB 2VDBA 3LU8A 4GG2A 1E7EA 3MHSB 3V03A 3WHSA 1E7HA 3NVIA 4GDKB 3VQIA 4IW1A 1KXPD 1O9XA 3MHHB 2QHBA 1VFIA 1VZSA 3GQXA 3SQJA 4J2VA 4C31B 4BY9C 1AO6A 2CKXA 4OTTA 3B9LA 2BXMA 3UIVA 1UORA 1E7BA 1HK1A 3V09A 4DHXB 3SIVB 2Z8IA 2JUHA 4HGMB 2BXFA 1HK4A 1BKEA 1FOUA 1NT2B 2NQOA 5HOZA 4F5SA 2XVUA 1HK3A 2VUFA 2DBUA 3V08A 1LNSA 3GQUA 1IJGA 1BM0A 5IIXA 2BX8A 1GNIA 2XW1A 3KJLA 1HK5A 3FWCC 4MBEC 4FJCB 4G03A 4L9KA 4LUHA 3M99C 4L8UA 1JNBA 3G9KD 3H3AA 1BJ5A 4S1YA 4ZC6A 2BXKA 3H37A 1MIWA 2BXCA 3SIUB 4LB9A 2DG5A 4F5VA 1E7GA 2XMOA 2BXHA 3PLAA 2OZBB 2XVWA 2DYMA 2BXDA 4LUFA 1TF0A 2BXLA 1E7FA 4IW2A 5IIHA 1N5UA 1H5WA 2VUEA 4G01A 2BXQA 3LU7A 1E7AA 2KBZA 4TQ0A 3CX9A 2BXEA 4GDXA 3FWBC 2DBXA 4WA6B 4EMXA 2BXPA 5ID9A 1MA9A 4N0UD 2DBWA 5GIOA 4JK4A 3JQZA 4K71A 1H9ZA 4TQ1A 1E78A 1MIVA 2I2ZA 3GA9L 3WHQA 4E99A 5BPKA 2XVQA 3JRYA 5GINA 4G04A 5FUOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z8K A;  2Z8I A;  4ZBK A;  3A75 A;  2QMC A;  4ZCG A;  2QM6 A;  3FNM A;  2NQO A;  2Z8J A;  2DBU A;  3WHR A;  2E0Y A;  4GDX A;  2DBX A;  4GG2 A;  2E0X A;  3WHS A;  5B5T A;  2DBW A;  2V36 A;  4OTU A;  4Z9O A;  4ZC6 A;  3WHQ A;  5BPK A;  4OTT A;  2DG5 A; 
#chains in the Genus database with same CATH topology
 2EFH A;  2Z8K A;  4FIP B;  5IIU A;  3BPJ A;  5GIP A;  4N0F D;  4DM0 A;  2DYO A;  5IJE A;  5DBY A;  2QMC A;  4ZCG A;  2QM6 A;  5ID7 A;  2BXI A;  1MUH A;  2OT3 A;  5D7G A;  4K2C A;  4FK5 B;  3LU6 A;  1LOT A;  3B9M A;  1TXU A;  4HGK A;  3WHR A;  1KW2 A;  4ZBR A;  2AJE A;  1J78 A;  2ROH A;  2YDF A;  3A73 A;  1MM8 A;  2BXO A;  5IJ5 A;  1SB0 A;  2BXG A;  3NMU A;  2E0X A;  2XVV A;  5B5T A;  5IJF A;  4M70 B;  5DQF A;  4NAW B;  4F5U A;  4ZUX V;  4D7X A;  2V36 A;  4LA0 A;  4N3Z A;  4OT2 A;  4PO0 A;  1HK2 A;  3NVK A;  4OTU A;  4Z9O A;  4BKE A;  3W1S A;  5IFO A;  3KIK A;  2EFD A;  4F5T A;  1E7I A;  1J7E A;  2BXN A;  4LB2 A;  2I30 A;  3NVM A;  4L9Q A;  4ZBK A;  3A75 A;  4OR0 A;  2BXA A;  1GNJ A;  3FNM A;  1MIY A;  2NNW A;  5GHK A;  1HA2 A;  2XW0 A;  3TDL A;  2Z8J A;  4Z69 A;  4W4U B;  2XSI A;  2LQI A;  2EFC A;  2E0Y A;  4ZBQ A;  2EFE A;  3ECP A;  2BXB A;  2LOQ A;  1E7C A;  3ICX A;  4GDL B;  2VDB A;  3LU8 A;  1MUS A;  4GG2 A;  1E7E A;  3MHS B;  3V03 A;  3WHS A;  1E7H A;  3NVI A;  4GDK B;  3VQI A;  4IW1 A;  1KXP D;  1O9X A;  3MHH B;  2QHB A;  1VFI A;  1VZS A;  3GQX A;  2K0N A;  4J2V A;  3SQJ A;  4C31 B;  4BY9 C;  1AO6 A;  2CKX A;  2KWF A;  3B9L A;  4OTT A;  2BXM A;  3UIV A;  1UOR A;  1E7B A;  1HK1 A;  3V09 A;  4DHX B;  3SIV B;  2Z8I A;  2JUH A;  4HGM B;  2BXF A;  1HK4 A;  1BKE A;  1FOU A;  1NT2 B;  2NQO A;  5HOZ A;  4F5S A;  2XVU A;  1HK3 A;  2VUF A;  2DBU A;  3V08 A;  1LNS A;  3GQU A;  2LXT A;  1IJG A;  1BM0 A;  2LQH A;  5IIX A;  2BX8 A;  1GNI A;  2XW1 A;  3KJL A;  1HK5 A;  3FWC C;  4MBE C;  4FJC B;  4G03 A;  4L9K A;  4LUH A;  3M99 C;  4L8U A;  1JNB A;  3G9K D;  3H3A A;  1BJ5 A;  4S1Y A;  4ZC6 A;  2BXK A;  3H37 A;  1MIW A;  2BXC A;  3SIU B;  4LB9 A;  2DG5 A;  4F5V A;  1E7G A;  2XMO A;  2BXH A;  3PLA A;  2LXS A;  2OZB B;  2XVW A;  2DYM A;  2BXD A;  4LUF A;  1TF0 A;  2BXL A;  1E7F A;  4I9O A;  4IW2 A;  5IIH A;  1N5U A;  1H5W A;  2AGH B;  2VUE A;  4G01 A;  2BXQ A;  3LU7 A;  1E7A A;  2KBZ A;  4TQ0 A;  3CX9 A;  2BXE A;  4GDX A;  3FWB C;  1KDX A;  2DBX A;  4WA6 B;  4EMX A;  2BXP A;  5ID9 A;  1MA9 A;  4N0U D;  2DBW A;  5GIO A;  4JK4 A;  3JQZ A;  4K71 A;  1H9Z A;  4TQ1 A;  1E78 A;  1MIV A;  2I2Z A;  3GA9 L;  2GUT A;  3WHQ A;  4E99 A;  5BPK A;  2XVQ A;  3JRY A;  5GIN A;  4G04 A;  5FUO A; 
#chains in the Genus database with same CATH homology
 2EFH A;  2Z8K A;  4FIP B;  5IIU A;  5GIP A;  4N0F D;  2DYO A;  5IJE A;  5DBY A;  2QMC A;  4ZCG A;  2QM6 A;  5ID7 A;  2BXI A;  2OT3 A;  5D7G A;  4K2C A;  4FK5 B;  3LU6 A;  1LOT A;  3B9M A;  1TXU A;  4HGK A;  3WHR A;  1KW2 A;  4ZBR A;  2AJE A;  1J78 A;  2ROH A;  2YDF A;  3A73 A;  2BXO A;  5IJ5 A;  2BXG A;  3NMU A;  2E0X A;  2XVV A;  5B5T A;  5IJF A;  4M70 B;  5DQF A;  4NAW B;  4F5U A;  4ZUX V;  3NVK A;  2V36 A;  4LA0 A;  4N3Z A;  4OT2 A;  4PO0 A;  1HK2 A;  4OTU A;  4Z9O A;  4BKE A;  3W1S A;  5IFO A;  3KIK A;  2EFD A;  4F5T A;  1E7I A;  1J7E A;  2BXN A;  4LB2 A;  2I30 A;  3NVM A;  4L9Q A;  4ZBK A;  3A75 A;  4OR0 A;  2BXA A;  1GNJ A;  3FNM A;  1MIY A;  2NNW A;  5GHK A;  1HA2 A;  2XW0 A;  3TDL A;  2Z8J A;  4Z69 A;  4W4U B;  2XSI A;  2EFC A;  2E0Y A;  4ZBQ A;  2EFE A;  2BXB A;  2LOQ A;  1E7C A;  3ICX A;  4GDL B;  2VDB A;  3LU8 A;  4GG2 A;  1E7E A;  3MHS B;  3V03 A;  3WHS A;  1E7H A;  3NVI A;  4GDK B;  3VQI A;  4IW1 A;  1KXP D;  1O9X A;  3MHH B;  2QHB A;  1VFI A;  1VZS A;  3GQX A;  3SQJ A;  4J2V A;  4C31 B;  4BY9 C;  1AO6 A;  2CKX A;  4OTT A;  3B9L A;  2BXM A;  3UIV A;  1UOR A;  1E7B A;  1HK1 A;  3V09 A;  4DHX B;  3SIV B;  2Z8I A;  2JUH A;  4HGM B;  2BXF A;  1HK4 A;  1BKE A;  1FOU A;  1NT2 B;  2NQO A;  5HOZ A;  4F5S A;  2XVU A;  1HK3 A;  2VUF A;  2DBU A;  3V08 A;  1LNS A;  3GQU A;  1IJG A;  1BM0 A;  5IIX A;  2BX8 A;  1GNI A;  2XW1 A;  3KJL A;  1HK5 A;  3FWC C;  4MBE C;  4FJC B;  4G03 A;  4L9K A;  4LUH A;  3M99 C;  4L8U A;  1JNB A;  3G9K D;  3H3A A;  1BJ5 A;  4S1Y A;  4ZC6 A;  2BXK A;  3H37 A;  1MIW A;  2BXC A;  3SIU B;  4LB9 A;  2DG5 A;  4F5V A;  1E7G A;  2XMO A;  2BXH A;  3PLA A;  2OZB B;  2XVW A;  2DYM A;  2BXD A;  4LUF A;  1TF0 A;  2BXL A;  1E7F A;  4IW2 A;  5IIH A;  1N5U A;  1H5W A;  2VUE A;  4G01 A;  2BXQ A;  3LU7 A;  1E7A A;  2KBZ A;  4TQ0 A;  3CX9 A;  2BXE A;  4GDX A;  3FWB C;  2DBX A;  4WA6 B;  4EMX A;  2BXP A;  5ID9 A;  1MA9 A;  4N0U D;  2DBW A;  5GIO A;  4JK4 A;  3JQZ A;  4K71 A;  1H9Z A;  4TQ1 A;  1E78 A;  1MIV A;  2I2Z A;  3GA9 L;  3WHQ A;  4E99 A;  5BPK A;  2XVQ A;  3JRY A;  5GIN A;  4G04 A;  5FUO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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