5BQMA

Crystal structure of sxn101959, a clostridium botulinum neurotoxin type d derivative and targeted secretion inhibitor
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
442
structure length
442
Chain Sequence
TWPVKDFNYSDPVNDNDILYLRIPQNKLITTPVKAFMITQNIWVIPERFSSDTNPSLSKPPRPTSKYQSYYDPSYLSTDEQKDTFLKGIIKLFKRINERDIGKKLINYLVVGSPFMGDSSTPEDTFDFTRHTTNIAVEKFENGSWKVTNIITPSVLIFGPLPNILDYTASLTLQGQQSNPSFEGFGTLSILKVAPEFLLTFSDVTSNQSSAVLGKSIFCMDPVIALMHELTHSLHQLYGINIPSDKRIRPQVSEGFFSQDGPNVQFEELYTFGGLDVEIIPQIERSQLREKALGHYKDIAKRLNNINKTIPSSWISNIDKYKKIFSEKYNFDKDNTGNFVVNIDKFNSLYSDLTNVMSEVVYSSQYNVKNRTHYFSRHYLPVFANILDDNIYTIRDGFNLTNKGFNIENSGQNIERNPALQKLSSESVVDLFTKVCVDGIIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Botulinum neurotoxin type D
publication title Structural analysis of Clostridium botulinum neurotoxin type D as a platform for the development of targeted secretion inhibitors.
pubmed doi rcsb
source organism Clostridium botulinum
total genus 117
structure length 442
sequence length 442
chains with identical sequence C
ec nomenclature ec 3.4.24.69: Bontoxilysin.
pdb deposition date 2015-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01742 Peptidase_M27 Clostridial neurotoxin zinc protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1240.10 Alpha Beta Alpha-Beta Complex Zincin-like Metalloproteases ("zincins"), catalytic domain like 5bqmA00
2ISEA 1G9BA 2G7NA 2W2DA 4ZKTB 1S0EA 2QN0A 4KS6A 2IMAA 3D3XA 2ISHA 3NF3A 2FPQA 3BOKA 3V0BA 2G7KA 3FFZA 1T3AA 3DSEA 3C8BA 2A8AA 3QIZA 2NYYA 1F31A 2IMCA 2G7PA 1EPWA 3C88A 1ZN3A 3QW5A 3FIEA 1S0BA 2A97A 4ZJXA 3DDBA 4HEVA 1S0DA 1E1HA 4J1LA 3QW7A 1S0CA 3VUOA 2ILPA 4EL4A 3DS9A 5BQNA 1ZKXA 4KTXA 3V0AB 4KUFA 3C89A 2ETFA 1G9DA 1ZL6A 3QIXA 3QW6A 1G9AA 3BWIA 3QIYA 3DEBA 3ZURA 3V0AA 1Z7HA 3K3QB 1F82A 3V0BB 3C8AA 2G7QA 1G9CA 1XTGA 3BONA 1YVGA 1XTFA 3BOOA 2XHLA 3QW8A 1S0FA 3BTAA 2IMBA 3DDAA 3FIIA 1ZB7A 3ZUSA 3ZUQA 1ZKWA 1ZL5A 3QJ0A 4EJ5A 1S0GA 4ELCA 2ISGA 2NZ9A 5BQMA 1T3CA 1I1EA 2NP0A
chains in the Genus database with same CATH superfamily
2ISEA 1G9BA 2G7NA 2W2DA 4ZKTB 1S0EA 2QN0A 4KS6A 2IMAA 3D3XA 2ISHA 3NF3A 2FPQA 3BOKA 3V0BA 2G7KA 3FFZA 3E11A 1T3AA 3DSEA 3C8BA 2A8AA 3QIZA 2NYYA 1F31A 2IMCA 2G7PA 1EPWA 4IL3A 3C88A 1ZN3A 3QW5A 3FIEA 1S0BA 4JIUA 2A97A 4ZJXA 3DDBA 4HEVA 1S0DA 1E1HA 4J1LA 3QW7A 1S0CA 3VUOA 2ILPA 4EL4A 3DS9A 5BQNA 1ZKXA 4KTXA 3V0AB 4KUFA 3C89A 2ETFA 1G9DA 1ZL6A 2EJQA 3QIXA 3QW6A 3CQBA 1G9AA 2YPTA 3BWIA 3QIYA 3DEBA 3ZURA 3V0AA 1Z7HA 3K3QB 1F82A 3V0BB 3C8AA 2G7QA 1G9CA 1XTGA 3BONA 1YVGA 1XTFA 3BOOA 2XHLA 3QW8A 1S0FA 4QHFA 3BTAA 2IMBA 3DDAA 4AW6A 3FIIA 1ZB7A 4JIXA 3ZUSA 3ZUQA 1ZKWA 1ZL5A 3QJ0A 4EJ5A 1S0GA 4ELCA 2ISGA 2NZ9A 5BQMA 1T3CA 1I1EA 2NP0A
chains in the Genus database with same CATH topology
2ISEA 1G9BA 2G7NA 2W2DA 4ZKTB 1S0EA 2QN0A 4KS6A 2IMAA 3D3XA 2ISHA 3NF3A 2FPQA 3BOKA 3V0BA 2G7KA 3FFZA 1T3AA 3DSEA 3C8BA 2A8AA 3QIZA 2NYYA 1F31A 2IMCA 2G7PA 1EPWA 3C88A 1ZN3A 3QW5A 3FIEA 1S0BA 2A97A 4ZJXA 3DDBA 4HEVA 1S0DA 1E1HA 4J1LA 3QW7A 1S0CA 3VUOA 2ILPA 4EL4A 3DS9A 5BQNA 1ZKXA 4KTXA 3V0AB 4KUFA 3C89A 2ETFA 1G9DA 1ZL6A 3QIXA 3QW6A 1G9AA 3BWIA 3QIYA 3DEBA 3ZURA 3V0AA 1Z7HA 3K3QB 1F82A 3V0BB 3C8AA 2G7QA 1G9CA 1XTGA 3BONA 1YVGA 1XTFA 3BOOA 2XHLA 3QW8A 1S0FA 3BTAA 2IMBA 3DDAA 3FIIA 1ZB7A 3ZUSA 3ZUQA 1ZKWA 1ZL5A 3QJ0A 4EJ5A 1S0GA 4ELCA 2ISGA 2NZ9A 5BQMA 1T3CA 1I1EA 2NP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ISE A;  1G9B A;  2G7N A;  2W2D A;  4ZKT B;  1S0E A;  2QN0 A;  4KS6 A;  2IMA A;  3D3X A;  2ISH A;  3NF3 A;  2FPQ A;  3BOK A;  3V0B A;  2G7K A;  3FFZ A;  1T3A A;  3DSE A;  3C8B A;  2A8A A;  3QIZ A;  2NYY A;  1F31 A;  2IMC A;  2G7P A;  1EPW A;  3C88 A;  1ZN3 A;  3QW5 A;  3FIE A;  1S0B A;  2A97 A;  4ZJX A;  3DDB A;  4HEV A;  1S0D A;  1E1H A;  4J1L A;  3QW7 A;  1S0C A;  3VUO A;  2ILP A;  4EL4 A;  3DS9 A;  5BQN A;  1ZKX A;  4KTX A;  3V0A B;  4KUF A;  3C89 A;  2ETF A;  1G9D A;  1ZL6 A;  3QIX A;  3QW6 A;  1G9A A;  3BWI A;  3QIY A;  3DEB A;  3ZUR A;  3V0A A;  1Z7H A;  3K3Q B;  1F82 A;  3V0B B;  3C8A A;  2G7Q A;  1G9C A;  1XTG A;  3BON A;  1YVG A;  1XTF A;  3BOO A;  2XHL A;  3QW8 A;  1S0F A;  3BTA A;  2IMB A;  3DDA A;  3FII A;  1ZB7 A;  3ZUS A;  3ZUQ A;  1ZKW A;  1ZL5 A;  3QJ0 A;  4EJ5 A;  1S0G A;  4ELC A;  2ISG A;  2NZ9 A;  5BQM A;  1T3C A;  1I1E A;  2NP0 A; 
#chains in the Genus database with same CATH topology
 2ISE A;  1G9B A;  2G7N A;  2W2D A;  4ZKT B;  1S0E A;  2QN0 A;  4KS6 A;  2IMA A;  3D3X A;  2ISH A;  3NF3 A;  2FPQ A;  3BOK A;  3V0B A;  2G7K A;  3FFZ A;  3E11 A;  1T3A A;  3DSE A;  3C8B A;  2A8A A;  3QIZ A;  2NYY A;  1F31 A;  2IMC A;  2G7P A;  1EPW A;  4IL3 A;  3C88 A;  1ZN3 A;  3QW5 A;  3FIE A;  1S0B A;  4JIU A;  2A97 A;  4ZJX A;  3DDB A;  4HEV A;  1S0D A;  1E1H A;  4J1L A;  3QW7 A;  1S0C A;  3VUO A;  2ILP A;  4EL4 A;  3DS9 A;  5BQN A;  1ZKX A;  4KTX A;  3V0A B;  4KUF A;  3C89 A;  2ETF A;  1G9D A;  1ZL6 A;  2EJQ A;  3QIX A;  3QW6 A;  3CQB A;  1G9A A;  2YPT A;  3BWI A;  3QIY A;  3DEB A;  3ZUR A;  3V0A A;  1Z7H A;  3K3Q B;  1F82 A;  3V0B B;  3C8A A;  2G7Q A;  1G9C A;  1XTG A;  3BON A;  1YVG A;  1XTF A;  3BOO A;  2XHL A;  3QW8 A;  1S0F A;  4QHF A;  3BTA A;  2IMB A;  3DDA A;  4AW6 A;  3FII A;  1ZB7 A;  4JIX A;  3ZUS A;  3ZUQ A;  1ZKW A;  1ZL5 A;  3QJ0 A;  4EJ5 A;  1S0G A;  4ELC A;  2ISG A;  2NZ9 A;  5BQM A;  1T3C A;  1I1E A;  2NP0 A; 
#chains in the Genus database with same CATH homology
 2ISE A;  1G9B A;  2G7N A;  2W2D A;  4ZKT B;  1S0E A;  2QN0 A;  4KS6 A;  2IMA A;  3D3X A;  2ISH A;  3NF3 A;  2FPQ A;  3BOK A;  3V0B A;  2G7K A;  3FFZ A;  1T3A A;  3DSE A;  3C8B A;  2A8A A;  3QIZ A;  2NYY A;  1F31 A;  2IMC A;  2G7P A;  1EPW A;  3C88 A;  1ZN3 A;  3QW5 A;  3FIE A;  1S0B A;  2A97 A;  4ZJX A;  3DDB A;  4HEV A;  1S0D A;  1E1H A;  4J1L A;  3QW7 A;  1S0C A;  3VUO A;  2ILP A;  4EL4 A;  3DS9 A;  5BQN A;  1ZKX A;  4KTX A;  3V0A B;  4KUF A;  3C89 A;  2ETF A;  1G9D A;  1ZL6 A;  3QIX A;  3QW6 A;  1G9A A;  3BWI A;  3QIY A;  3DEB A;  3ZUR A;  3V0A A;  1Z7H A;  3K3Q B;  1F82 A;  3V0B B;  3C8A A;  2G7Q A;  1G9C A;  1XTG A;  3BON A;  1YVG A;  1XTF A;  3BOO A;  2XHL A;  3QW8 A;  1S0F A;  3BTA A;  2IMB A;  3DDA A;  3FII A;  1ZB7 A;  3ZUS A;  3ZUQ A;  1ZKW A;  1ZL5 A;  3QJ0 A;  4EJ5 A;  1S0G A;  4ELC A;  2ISG A;  2NZ9 A;  5BQM A;  1T3C A;  1I1E A;  2NP0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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