5CDLA

Proline dipeptidase from deinococcus radiodurans (selenomethionine derivative)
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
349
structure length
349
Chain Sequence
SSKMDQLRPVLGRAGVDALWVSAPANVRWLSGFTSAEDGKVLVSPDGATLYTDARYTVQAQEESSLPQYIARPPATYEHAADTVRGLRVGFEAESLTVAELEDLRQAWPNSTLVALRGTLGGLRAVKTPEEIGAIRAAQDLADRVYTEVRPMIRAGVRELDVAVEIETRLRRAGGESAFELIVASGPNGAKPHGHASKRVIEDGDLVTIDMGARLGGYNSDMTRTVAVGTPSAEMKRVYDAVLEAEEAAIAAIRPGVRAADLDKLARDLLTRHGLGEAFAHSLGHGVGLEVHEGPGLRGTSQDVLEAGMVITIEPGAYLPGVGGVRIEDLILVTEDGYEVLSHSAKESV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
rcsb
source organism Deinococcus radiodurans
total genus 107
structure length 349
sequence length 349
ec nomenclature
pdb deposition date 2015-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdlA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdlA02
4RGZ1 2V6CA 2GU7A 4IKUA 5JI6A 4U6EA 1YVMA 1KQ0A 2Q96A 2BWVA 4A6WA 5E2CA 3L7GA 1C22A 2V3XA 3PKCA 4ZWPA 2B3LA 3CTZA 2BWUA 4HXXA 1WBQA 3IG4A 3PKBA 4IKTA 4S00A 4IKSA 2BWYA 1R58A 4FLLA 4JUQA 2NQ6A 3TB5A 1O0XA 2GG9A 3TAVA 5D6FA 1YW7A 2GU5A 4KM3A 5E5BA 3RVAA 3L24A 3I7MA 4U1BA 4FLJA 1QXZA 2GU6A 3PKAA 2EA2A 2GGBA 1BOAA 4U75A 1XGOA 5CE6A 3OVKA 4ZWUA 1YW9A 4PNCA 2BWSA 1B6AA 1B59A 4R60A 5CIKA 2B3HA 1MATA 1YJ3A 1C23A 2BHAA 2BB7A 2GG3A 1WKMA 4ZWOA 2Q93A 4S01A 4MATA 1CHMA 4S2TP 4QR8A 2DFIA 2ADUA 1BN5A 2ZSGA 2EVCA 4A6VA 4RZYA 2BWWA 3RORA 2OKNA 3PN9A 1KP0A 2P9AA 3PEBA 3MATA 4RZZA 4B28A 5D6EA 1WN1A 2NQ7A 4IPAA 3IU8A 4U76A 2BHDA 2Q92A 3QOCA 3PKEA 5CNXA 1A16A 1C27A 2GA2A 2B3KA 4U73A 2Q8KA 4Z7MA 1C24A 2GGCA 1N51A 2BN7A 2GG7A 2GU4A 4FO8A 4U6CA 4U71A 3BIQA 3CB5A 2Q94A 3FM3A 1JAWA 1WL9A 1Y1NA 2BHCA 4FO7A 2GZ5A 1YW8A 3FMRA 2BH3A 2HOWA 1WY2A 2OAZA 1QXWA 1M35A 2BWXA 1QXYA 4FLIA 4IF7A 2EVMA 4OOKA 5CLSA 1WL6A 2BWTA 2Q95A 5CDEA 1R5HA 2GG2A 2GG0A 4IDYA 1PV9A 3IL0A 2V3ZA 3S6BA 2MATA 4U70A 4ZNGA 4FUKA 1XGNA 4IU6A 1C21A 4U6ZA 3MX6A 2EVOA 2GG8A 2BHBA 1XNZA 3PKDA 4FKCA 4PV4A 5JFRA 5FCHA 1W7VA 3BITA 2GG5A 4U69A 3IU9A 5CDVA 3FMQA 3O5VA 3Q6DA 2P98A 3CB6A 4S2RP 1QZYA 1XGMA 3BIPA 1W2MA 2P99A 4IECA 1XGSA 3IU7A 1R5GA 5CDLA 2EA4A 2IW2A 5JHUA 3D27A 4EGEA 4FLKA 3MR1A 4U6WA 2GTXA 4IKRA 2V3YA 3OOOA 5FCFA 1KQ9A 2G6PA 1WLRA 4U6JA
chains in the Genus database with same CATH superfamily
4RGZ1 2V6CA 2GU7A 4IKUA 5JI6A 4U6EA 1YVMA 1KQ0A 2Q96A 2BWVA 4A6WA 5E2CA 3L7GA 1C22A 2V3XA 3PKCA 4ZWPA 2B3LA 3CTZA 2BWUA 4HXXA 1WBQA 3IG4A 3PKBA 4IKTA 4S00A 4IKSA 2BWYA 1R58A 4FLLA 4JUQA 2NQ6A 3TB5A 1O0XA 2GG9A 3TAVA 5D6FA 1YW7A 2GU5A 4KM3A 5E5BA 3RVAA 3L24A 3I7MA 4U1BA 4FLJA 1QXZA 2GU6A 3PKAA 2EA2A 2GGBA 1BOAA 4U75A 1XGOA 5CE6A 3OVKA 4ZWUA 1YW9A 4PNCA 2BWSA 1B6AA 1B59A 4R60A 5CIKA 2B3HA 1MATA 1YJ3A 1C23A 2BHAA 2BB7A 2GG3A 1WKMA 4ZWOA 2Q93A 4S01A 4MATA 1CHMA 4S2TP 4QR8A 2DFIA 2ADUA 1BN5A 2ZSGA 2EVCA 4A6VA 4RZYA 2BWWA 3RORA 2OKNA 3PN9A 1KP0A 2P9AA 3PEBA 3MATA 4RZZA 4B28A 5D6EA 1WN1A 2NQ7A 4IPAA 3IU8A 4U76A 2BHDA 2Q92A 3QOCA 3PKEA 5CNXA 1A16A 1C27A 2GA2A 2B3KA 4U73A 2Q8KA 4Z7MA 1C24A 2GGCA 1N51A 2BN7A 2GG7A 2GU4A 4FO8A 4U6CA 4U71A 3BIQA 3CB5A 2Q94A 3FM3A 1JAWA 1WL9A 1Y1NA 2BHCA 4FO7A 2GZ5A 1YW8A 3FMRA 2BH3A 2HOWA 1WY2A 2OAZA 1QXWA 1M35A 2BWXA 1QXYA 4FLIA 4IF7A 2EVMA 4OOKA 5CLSA 1WL6A 2BWTA 2Q95A 5CDEA 1R5HA 2GG2A 2GG0A 4IDYA 1PV9A 3IL0A 2V3ZA 3S6BA 2MATA 4U70A 4ZNGA 4FUKA 1XGNA 4IU6A 1C21A 4U6ZA 3MX6A 2EVOA 2GG8A 2BHBA 1XNZA 3PKDA 4FKCA 4PV4A 5JFRA 5FCHA 1W7VA 3BITA 2GG5A 4U69A 3IU9A 5CDVA 3FMQA 3O5VA 3Q6DA 2P98A 3CB6A 4S2RP 1QZYA 1XGMA 3BIPA 1W2MA 2P99A 4IECA 1XGSA 3IU7A 1R5GA 5CDLA 2EA4A 2IW2A 5JHUA 3D27A 4EGEA 4FLKA 3MR1A 4U6WA 2GTXA 4IKRA 2V3YA 3OOOA 5FCFA 1KQ9A 2G6PA 1WLRA 4U6JA
chains in the Genus database with same CATH topology
4RGZ1 2V6CA 2GU7A 4IKUA 5JI6A 4U6EA 1YVMA 1KQ0A 2Q96A 2BWVA 4A6WA 5E2CA 3L7GA 1C22A 2V3XA 3PKCA 4ZWPA 2B3LA 3CTZA 2BWUA 4HXXA 1WBQA 3IG4A 3PKBA 4IKTA 4S00A 4IKSA 2BWYA 1R58A 4FLLA 4JUQA 2NQ6A 3TB5A 1O0XA 2GG9A 3TAVA 5D6FA 1YW7A 2GU5A 4KM3A 5E5BA 3RVAA 3L24A 3I7MA 4U1BA 4FLJA 1QXZA 2GU6A 3PKAA 2EA2A 2GGBA 1BOAA 4U75A 1XGOA 5CE6A 3OVKA 4ZWUA 1YW9A 4PNCA 2BWSA 1B6AA 1B59A 4R60A 5CIKA 2B3HA 1MATA 1YJ3A 1C23A 2BHAA 2BB7A 2GG3A 1WKMA 4ZWOA 2Q93A 4S01A 4MATA 1CHMA 4S2TP 4QR8A 2DFIA 2ADUA 1BN5A 2ZSGA 2EVCA 4A6VA 4RZYA 2BWWA 3RORA 2OKNA 3PN9A 1KP0A 2P9AA 3PEBA 3MATA 4RZZA 4B28A 5D6EA 1WN1A 2NQ7A 4IPAA 3IU8A 4U76A 2BHDA 2Q92A 3QOCA 3PKEA 5CNXA 1A16A 1C27A 2GA2A 2B3KA 4U73A 2Q8KA 4Z7MA 1C24A 2GGCA 1N51A 2BN7A 2GG7A 2GU4A 4FO8A 4U6CA 4U71A 3BIQA 3CB5A 2Q94A 3FM3A 1JAWA 1WL9A 1Y1NA 2BHCA 4FO7A 2GZ5A 1YW8A 3FMRA 2BH3A 2HOWA 1WY2A 2OAZA 1QXWA 1M35A 2BWXA 1QXYA 4FLIA 4IF7A 2EVMA 4OOKA 5CLSA 1WL6A 2BWTA 2Q95A 5CDEA 1R5HA 2GG2A 2GG0A 4IDYA 1PV9A 3IL0A 2V3ZA 3S6BA 2MATA 4U70A 4ZNGA 4FUKA 1XGNA 4IU6A 1C21A 4U6ZA 3MX6A 2EVOA 2GG8A 2BHBA 1XNZA 3PKDA 4FKCA 4PV4A 5JFRA 5FCHA 1W7VA 3BITA 2GG5A 4U69A 3IU9A 5CDVA 3FMQA 3O5VA 3Q6DA 2P98A 3CB6A 4S2RP 1QZYA 1XGMA 3BIPA 1W2MA 2P99A 4IECA 1XGSA 3IU7A 1R5GA 5CDLA 2EA4A 2IW2A 5JHUA 3D27A 4EGEA 4FLKA 3MR1A 4U6WA 2GTXA 4IKRA 2V3YA 3OOOA 5FCFA 1KQ9A 2G6PA 1WLRA 4U6JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RGZ 1;  2V6C A;  2GU7 A;  4IKU A;  5JI6 A;  4U6E A;  1YVM A;  1KQ0 A;  2Q96 A;  2BWV A;  4A6W A;  5E2C A;  3L7G A;  1C22 A;  2V3X A;  3PKC A;  4ZWP A;  2B3L A;  3CTZ A;  2BWU A;  4HXX A;  1WBQ A;  3IG4 A;  3PKB A;  4IKT A;  4S00 A;  4IKS A;  2BWY A;  1R58 A;  4FLL A;  4JUQ A;  2NQ6 A;  3TB5 A;  1O0X A;  2GG9 A;  3TAV A;  5D6F A;  1YW7 A;  2GU5 A;  4KM3 A;  5E5B A;  3RVA A;  3L24 A;  3I7M A;  4U1B A;  4FLJ A;  1QXZ A;  2GU6 A;  3PKA A;  2EA2 A;  2GGB A;  1BOA A;  4U75 A;  1XGO A;  5CE6 A;  3OVK A;  4ZWU A;  1YW9 A;  4PNC A;  2BWS A;  1B6A A;  1B59 A;  4R60 A;  5CIK A;  2B3H A;  1MAT A;  1YJ3 A;  1C23 A;  2BHA A;  2BB7 A;  2GG3 A;  1WKM A;  4ZWO A;  2Q93 A;  4S01 A;  4MAT A;  1CHM A;  4S2T P;  4QR8 A;  2DFI A;  2ADU A;  1BN5 A;  2ZSG A;  2EVC A;  4A6V A;  4RZY A;  2BWW A;  3ROR A;  2OKN A;  3PN9 A;  1KP0 A;  2P9A A;  3PEB A;  3MAT A;  4RZZ A;  4B28 A;  5D6E A;  1WN1 A;  2NQ7 A;  4IPA A;  3IU8 A;  4U76 A;  2BHD A;  2Q92 A;  3QOC A;  3PKE A;  5CNX A;  1A16 A;  1C27 A;  2GA2 A;  2B3K A;  4U73 A;  2Q8K A;  4Z7M A;  1C24 A;  2GGC A;  1N51 A;  2BN7 A;  2GG7 A;  2GU4 A;  4FO8 A;  4U6C A;  4U71 A;  3BIQ A;  3CB5 A;  2Q94 A;  3FM3 A;  1JAW A;  1WL9 A;  1Y1N A;  2BHC A;  4FO7 A;  2GZ5 A;  1YW8 A;  3FMR A;  2BH3 A;  2HOW A;  1WY2 A;  2OAZ A;  1QXW A;  1M35 A;  2BWX A;  1QXY A;  4FLI A;  4IF7 A;  2EVM A;  4OOK A;  5CLS A;  1WL6 A;  2BWT A;  2Q95 A;  5CDE A;  1R5H A;  2GG2 A;  2GG0 A;  4IDY A;  1PV9 A;  3IL0 A;  2V3Z A;  3S6B A;  2MAT A;  4U70 A;  4ZNG A;  4FUK A;  1XGN A;  4IU6 A;  1C21 A;  4U6Z A;  3MX6 A;  2EVO A;  2GG8 A;  2BHB A;  1XNZ A;  3PKD A;  4FKC A;  4PV4 A;  5JFR A;  5FCH A;  1W7V A;  3BIT A;  2GG5 A;  4U69 A;  3IU9 A;  5CDV A;  3FMQ A;  3O5V A;  3Q6D A;  2P98 A;  3CB6 A;  4S2R P;  1QZY A;  1XGM A;  3BIP A;  1W2M A;  2P99 A;  4IEC A;  1XGS A;  3IU7 A;  1R5G A;  5CDL A;  2EA4 A;  2IW2 A;  5JHU A;  3D27 A;  4EGE A;  4FLK A;  3MR1 A;  4U6W A;  2GTX A;  4IKR A;  2V3Y A;  3OOO A;  5FCF A;  1KQ9 A;  2G6P A;  1WLR A;  4U6J A; 
#chains in the Genus database with same CATH topology
 4RGZ 1;  2V6C A;  2GU7 A;  4IKU A;  5JI6 A;  4U6E A;  1YVM A;  1KQ0 A;  2Q96 A;  2BWV A;  4A6W A;  5E2C A;  3L7G A;  1C22 A;  2V3X A;  3PKC A;  4ZWP A;  2B3L A;  3CTZ A;  2BWU A;  4HXX A;  1WBQ A;  3IG4 A;  3PKB A;  4IKT A;  4S00 A;  4IKS A;  2BWY A;  1R58 A;  4FLL A;  4JUQ A;  2NQ6 A;  3TB5 A;  1O0X A;  2GG9 A;  3TAV A;  5D6F A;  1YW7 A;  2GU5 A;  4KM3 A;  5E5B A;  3RVA A;  3L24 A;  3I7M A;  4U1B A;  4FLJ A;  1QXZ A;  2GU6 A;  3PKA A;  2EA2 A;  2GGB A;  1BOA A;  4U75 A;  1XGO A;  5CE6 A;  3OVK A;  4ZWU A;  1YW9 A;  4PNC A;  2BWS A;  1B6A A;  1B59 A;  4R60 A;  5CIK A;  2B3H A;  1MAT A;  1YJ3 A;  1C23 A;  2BHA A;  2BB7 A;  2GG3 A;  1WKM A;  4ZWO A;  2Q93 A;  4S01 A;  4MAT A;  1CHM A;  4S2T P;  4QR8 A;  2DFI A;  2ADU A;  1BN5 A;  2ZSG A;  2EVC A;  4A6V A;  4RZY A;  2BWW A;  3ROR A;  2OKN A;  3PN9 A;  1KP0 A;  2P9A A;  3PEB A;  3MAT A;  4RZZ A;  4B28 A;  5D6E A;  1WN1 A;  2NQ7 A;  4IPA A;  3IU8 A;  4U76 A;  2BHD A;  2Q92 A;  3QOC A;  3PKE A;  5CNX A;  1A16 A;  1C27 A;  2GA2 A;  2B3K A;  4U73 A;  2Q8K A;  4Z7M A;  1C24 A;  2GGC A;  1N51 A;  2BN7 A;  2GG7 A;  2GU4 A;  4FO8 A;  4U6C A;  4U71 A;  3BIQ A;  3CB5 A;  2Q94 A;  3FM3 A;  1JAW A;  1WL9 A;  1Y1N A;  2BHC A;  4FO7 A;  2GZ5 A;  1YW8 A;  3FMR A;  2BH3 A;  2HOW A;  1WY2 A;  2OAZ A;  1QXW A;  1M35 A;  2BWX A;  1QXY A;  4FLI A;  4IF7 A;  2EVM A;  4OOK A;  5CLS A;  1WL6 A;  2BWT A;  2Q95 A;  5CDE A;  1R5H A;  2GG2 A;  2GG0 A;  4IDY A;  1PV9 A;  3IL0 A;  2V3Z A;  3S6B A;  2MAT A;  4U70 A;  4ZNG A;  4FUK A;  1XGN A;  4IU6 A;  1C21 A;  4U6Z A;  3MX6 A;  2EVO A;  2GG8 A;  2BHB A;  1XNZ A;  3PKD A;  4FKC A;  4PV4 A;  5JFR A;  5FCH A;  1W7V A;  3BIT A;  2GG5 A;  4U69 A;  3IU9 A;  5CDV A;  3FMQ A;  3O5V A;  3Q6D A;  2P98 A;  3CB6 A;  4S2R P;  1QZY A;  1XGM A;  3BIP A;  1W2M A;  2P99 A;  4IEC A;  1XGS A;  3IU7 A;  1R5G A;  5CDL A;  2EA4 A;  2IW2 A;  5JHU A;  3D27 A;  4EGE A;  4FLK A;  3MR1 A;  4U6W A;  2GTX A;  4IKR A;  2V3Y A;  3OOO A;  5FCF A;  1KQ9 A;  2G6P A;  1WLR A;  4U6J A; 
#chains in the Genus database with same CATH homology
 4RGZ 1;  2V6C A;  2GU7 A;  4IKU A;  5JI6 A;  4U6E A;  1YVM A;  1KQ0 A;  2Q96 A;  2BWV A;  4A6W A;  5E2C A;  3L7G A;  1C22 A;  2V3X A;  3PKC A;  4ZWP A;  2B3L A;  3CTZ A;  2BWU A;  4HXX A;  1WBQ A;  3IG4 A;  3PKB A;  4IKT A;  4S00 A;  4IKS A;  2BWY A;  1R58 A;  4FLL A;  4JUQ A;  2NQ6 A;  3TB5 A;  1O0X A;  2GG9 A;  3TAV A;  5D6F A;  1YW7 A;  2GU5 A;  4KM3 A;  5E5B A;  3RVA A;  3L24 A;  3I7M A;  4U1B A;  4FLJ A;  1QXZ A;  2GU6 A;  3PKA A;  2EA2 A;  2GGB A;  1BOA A;  4U75 A;  1XGO A;  5CE6 A;  3OVK A;  4ZWU A;  1YW9 A;  4PNC A;  2BWS A;  1B6A A;  1B59 A;  4R60 A;  5CIK A;  2B3H A;  1MAT A;  1YJ3 A;  1C23 A;  2BHA A;  2BB7 A;  2GG3 A;  1WKM A;  4ZWO A;  2Q93 A;  4S01 A;  4MAT A;  1CHM A;  4S2T P;  4QR8 A;  2DFI A;  2ADU A;  1BN5 A;  2ZSG A;  2EVC A;  4A6V A;  4RZY A;  2BWW A;  3ROR A;  2OKN A;  3PN9 A;  1KP0 A;  2P9A A;  3PEB A;  3MAT A;  4RZZ A;  4B28 A;  5D6E A;  1WN1 A;  2NQ7 A;  4IPA A;  3IU8 A;  4U76 A;  2BHD A;  2Q92 A;  3QOC A;  3PKE A;  5CNX A;  1A16 A;  1C27 A;  2GA2 A;  2B3K A;  4U73 A;  2Q8K A;  4Z7M A;  1C24 A;  2GGC A;  1N51 A;  2BN7 A;  2GG7 A;  2GU4 A;  4FO8 A;  4U6C A;  4U71 A;  3BIQ A;  3CB5 A;  2Q94 A;  3FM3 A;  1JAW A;  1WL9 A;  1Y1N A;  2BHC A;  4FO7 A;  2GZ5 A;  1YW8 A;  3FMR A;  2BH3 A;  2HOW A;  1WY2 A;  2OAZ A;  1QXW A;  1M35 A;  2BWX A;  1QXY A;  4FLI A;  4IF7 A;  2EVM A;  4OOK A;  5CLS A;  1WL6 A;  2BWT A;  2Q95 A;  5CDE A;  1R5H A;  2GG2 A;  2GG0 A;  4IDY A;  1PV9 A;  3IL0 A;  2V3Z A;  3S6B A;  2MAT A;  4U70 A;  4ZNG A;  4FUK A;  1XGN A;  4IU6 A;  1C21 A;  4U6Z A;  3MX6 A;  2EVO A;  2GG8 A;  2BHB A;  1XNZ A;  3PKD A;  4FKC A;  4PV4 A;  5JFR A;  5FCH A;  1W7V A;  3BIT A;  2GG5 A;  4U69 A;  3IU9 A;  5CDV A;  3FMQ A;  3O5V A;  3Q6D A;  2P98 A;  3CB6 A;  4S2R P;  1QZY A;  1XGM A;  3BIP A;  1W2M A;  2P99 A;  4IEC A;  1XGS A;  3IU7 A;  1R5G A;  5CDL A;  2EA4 A;  2IW2 A;  5JHU A;  3D27 A;  4EGE A;  4FLK A;  3MR1 A;  4U6W A;  2GTX A;  4IKR A;  2V3Y A;  3OOO A;  5FCF A;  1KQ9 A;  2G6P A;  1WLR A;  4U6J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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