5CIKA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris in citrate condition
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 133
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cikA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cikA02
4IDYA 5CDVA 4S01A 1KQ9A 1XNZA 2GU4A 5JFRA 3RVAA 5D6FA 4FLIA 2BHAA 4OOKA 2BN7A 1QXYA 2B3HA 1KP0A 2GG2A 2EA4A 4EGEA 2Q94A 3Q6DA 1C27A 2BWTA 2BWUA 4S2RP 3PKCA 4IKSA 2BHDA 3CTZA 2G6PA 4IPAA 4A6VA 1A16A 1WKMA 1XGSA 2EA2A 1XGOA 3BIPA 3PKDA 2BWXA 1YW8A 2GA2A 4U6JA 1QXWA 1W7VA 3PKAA 4U1BA 4U6CA 1WN1A 4IKRA 1C24A 3MATA 2GG0A 1KQ0A 3CB6A 2V3YA 1CHMA 2Q92A 4FLKA 2Q95A 3IU9A 2BWYA 2IW2A 2BWSA 3PN9A 3S6BA 2BHCA 4U73A 5E5BA 4RZZA 1O0XA 3OOOA 1BN5A 4B28A 1QXZA 5JI6A 3TAVA 4U70A 2NQ7A 1YVMA 3CB5A 4IKTA 2GG7A 2GGBA 5FCHA 2DFIA 2P99A 2EVCA 1JAWA 1WBQA 2EVOA 3QOCA 3PKEA 1R5HA 3L7GA 3FM3A 2Q8KA 2GU6A 3IL0A 2MATA 2NQ6A 2B3LA 1N51A 2BB7A 4U6ZA 4U6EA 3PEBA 4FO8A 5FCFA 2OKNA 3OVKA 4HXXA 4PNCA 2OAZA 4U76A 1B59A 5CLSA 1WL6A 4MATA 4RZYA 2B3KA 1BOAA 4U71A 4FLJA 4U75A 3MR1A 3MX6A 4RGZ1 2BWWA 1M35A 5CDLA 1YW9A 4R60A 2GU7A 4Z7MA 2GG9A 2V3ZA 5CIKA 2GTXA 4ZWPA 3L24A 3BITA 4S2TP 1QZYA 4QR8A 1XGMA 4U69A 3I7MA 3IU7A 5JHUA 2GU5A 4FLLA 4ZWOA 1YJ3A 4PV4A 1WLRA 4S00A 2HOWA 4FUKA 2EVMA 2Q93A 4ZNGA 1W2MA 2GG3A 3O5VA 1C23A 5D6EA 2GZ5A 4U6WA 3BIQA 1C21A 1WL9A 2GGCA 4IKUA 3RORA 4A6WA 3PKBA 1MATA 2V6CA 2ZSGA 2GG8A 3IG4A 5CDEA 1B6AA 2BHBA 1Y1NA 1PV9A 4IF7A 2P98A 1R5GA 5E2CA 2GG5A 3FMRA 4KM3A 2BH3A 2P9AA 1WY2A 1C22A 4FO7A 4FKCA 1XGNA 4JUQA 3FMQA 2V3XA 4ZWUA 1R58A 2ADUA 4IU6A 3TB5A 3D27A 5CE6A 2Q96A 1YW7A 4IECA 2BWVA 3IU8A 5CNXA
chains in the Genus database with same CATH superfamily
4IDYA 5CDVA 4S01A 1KQ9A 1XNZA 2GU4A 5JFRA 3RVAA 5D6FA 4FLIA 2BHAA 4OOKA 2BN7A 1QXYA 2B3HA 1KP0A 2GG2A 2EA4A 4EGEA 2Q94A 3Q6DA 1C27A 2BWTA 2BWUA 4S2RP 3PKCA 4IKSA 2BHDA 3CTZA 2G6PA 4IPAA 4A6VA 1A16A 1WKMA 1XGSA 2EA2A 1XGOA 3BIPA 3PKDA 2BWXA 1YW8A 2GA2A 4U6JA 1QXWA 1W7VA 3PKAA 4U1BA 4U6CA 1WN1A 4IKRA 1C24A 3MATA 2GG0A 1KQ0A 3CB6A 2V3YA 1CHMA 2Q92A 4FLKA 2Q95A 3IU9A 2BWYA 2IW2A 2BWSA 3PN9A 3S6BA 2BHCA 4U73A 5E5BA 4RZZA 1O0XA 3OOOA 1BN5A 4B28A 1QXZA 5JI6A 3TAVA 4U70A 2NQ7A 1YVMA 3CB5A 4IKTA 2GG7A 2GGBA 5FCHA 2DFIA 2P99A 2EVCA 1JAWA 1WBQA 2EVOA 3QOCA 3PKEA 1R5HA 3L7GA 3FM3A 2Q8KA 2GU6A 3IL0A 2MATA 2NQ6A 2B3LA 1N51A 2BB7A 4U6ZA 4U6EA 3PEBA 4FO8A 5FCFA 2OKNA 3OVKA 4HXXA 4PNCA 2OAZA 4U76A 1B59A 5CLSA 1WL6A 4MATA 4RZYA 2B3KA 1BOAA 4U71A 4FLJA 4U75A 3MR1A 3MX6A 4RGZ1 2BWWA 1M35A 5CDLA 1YW9A 4R60A 2GU7A 4Z7MA 2GG9A 2V3ZA 5CIKA 2GTXA 4ZWPA 3L24A 3BITA 4S2TP 1QZYA 4QR8A 1XGMA 4U69A 3I7MA 3IU7A 5JHUA 2GU5A 4FLLA 4ZWOA 1YJ3A 4PV4A 1WLRA 4S00A 2HOWA 4FUKA 2EVMA 2Q93A 4ZNGA 1W2MA 2GG3A 3O5VA 1C23A 5D6EA 2GZ5A 4U6WA 3BIQA 1C21A 1WL9A 2GGCA 4IKUA 3RORA 4A6WA 3PKBA 1MATA 2V6CA 2ZSGA 2GG8A 3IG4A 5CDEA 1B6AA 2BHBA 1Y1NA 1PV9A 4IF7A 2P98A 1R5GA 5E2CA 2GG5A 3FMRA 4KM3A 2BH3A 2P9AA 1WY2A 1C22A 4FO7A 4FKCA 1XGNA 4JUQA 3FMQA 2V3XA 4ZWUA 1R58A 2ADUA 4IU6A 3TB5A 3D27A 5CE6A 2Q96A 1YW7A 4IECA 2BWVA 3IU8A 5CNXA
chains in the Genus database with same CATH topology
4IDYA 5CDVA 4S01A 1KQ9A 1XNZA 2GU4A 5JFRA 3RVAA 5D6FA 4FLIA 2BHAA 4OOKA 2BN7A 1QXYA 2B3HA 1KP0A 2GG2A 2EA4A 4EGEA 2Q94A 3Q6DA 1C27A 2BWTA 2BWUA 4S2RP 3PKCA 4IKSA 2BHDA 3CTZA 2G6PA 4IPAA 4A6VA 1A16A 1WKMA 1XGSA 2EA2A 1XGOA 3BIPA 3PKDA 2BWXA 1YW8A 2GA2A 4U6JA 1QXWA 1W7VA 3PKAA 4U1BA 4U6CA 1WN1A 4IKRA 1C24A 3MATA 2GG0A 1KQ0A 3CB6A 2V3YA 1CHMA 2Q92A 4FLKA 2Q95A 3IU9A 2BWYA 2IW2A 2BWSA 3PN9A 3S6BA 2BHCA 4U73A 5E5BA 4RZZA 1O0XA 3OOOA 1BN5A 4B28A 1QXZA 5JI6A 3TAVA 4U70A 2NQ7A 1YVMA 3CB5A 4IKTA 2GG7A 2GGBA 5FCHA 2DFIA 2P99A 2EVCA 1JAWA 1WBQA 2EVOA 3QOCA 3PKEA 1R5HA 3L7GA 3FM3A 2Q8KA 2GU6A 3IL0A 2MATA 2NQ6A 2B3LA 1N51A 2BB7A 4U6ZA 4U6EA 3PEBA 4FO8A 5FCFA 2OKNA 3OVKA 4HXXA 4PNCA 2OAZA 4U76A 1B59A 5CLSA 1WL6A 4MATA 4RZYA 2B3KA 1BOAA 4U71A 4FLJA 4U75A 3MR1A 3MX6A 4RGZ1 2BWWA 1M35A 5CDLA 1YW9A 4R60A 2GU7A 4Z7MA 2GG9A 2V3ZA 5CIKA 2GTXA 4ZWPA 3L24A 3BITA 4S2TP 1QZYA 4QR8A 1XGMA 4U69A 3I7MA 3IU7A 5JHUA 2GU5A 4FLLA 4ZWOA 1YJ3A 4PV4A 1WLRA 4S00A 2HOWA 4FUKA 2EVMA 2Q93A 4ZNGA 1W2MA 2GG3A 3O5VA 1C23A 5D6EA 2GZ5A 4U6WA 3BIQA 1C21A 1WL9A 2GGCA 4IKUA 3RORA 4A6WA 3PKBA 1MATA 2V6CA 2ZSGA 2GG8A 3IG4A 5CDEA 1B6AA 2BHBA 1Y1NA 1PV9A 4IF7A 2P98A 1R5GA 5E2CA 2GG5A 3FMRA 4KM3A 2BH3A 2P9AA 1WY2A 1C22A 4FO7A 4FKCA 1XGNA 4JUQA 3FMQA 2V3XA 4ZWUA 1R58A 2ADUA 4IU6A 3TB5A 3D27A 5CE6A 2Q96A 1YW7A 4IECA 2BWVA 3IU8A 5CNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IDY A;  5CDV A;  4S01 A;  1KQ9 A;  1XNZ A;  2GU4 A;  5JFR A;  3RVA A;  5D6F A;  4FLI A;  2BHA A;  4OOK A;  2BN7 A;  1QXY A;  2B3H A;  1KP0 A;  2GG2 A;  2EA4 A;  4EGE A;  2Q94 A;  3Q6D A;  1C27 A;  2BWT A;  2BWU A;  4S2R P;  3PKC A;  4IKS A;  2BHD A;  3CTZ A;  2G6P A;  4IPA A;  4A6V A;  1A16 A;  1WKM A;  1XGS A;  2EA2 A;  1XGO A;  3BIP A;  3PKD A;  2BWX A;  1YW8 A;  2GA2 A;  4U6J A;  1QXW A;  1W7V A;  3PKA A;  4U1B A;  4U6C A;  1WN1 A;  4IKR A;  1C24 A;  3MAT A;  2GG0 A;  1KQ0 A;  3CB6 A;  2V3Y A;  1CHM A;  2Q92 A;  4FLK A;  2Q95 A;  3IU9 A;  2BWY A;  2IW2 A;  2BWS A;  3PN9 A;  3S6B A;  2BHC A;  4U73 A;  5E5B A;  4RZZ A;  1O0X A;  3OOO A;  1BN5 A;  4B28 A;  1QXZ A;  5JI6 A;  3TAV A;  4U70 A;  2NQ7 A;  1YVM A;  3CB5 A;  4IKT A;  2GG7 A;  2GGB A;  5FCH A;  2DFI A;  2P99 A;  2EVC A;  1JAW A;  1WBQ A;  2EVO A;  3QOC A;  3PKE A;  1R5H A;  3L7G A;  3FM3 A;  2Q8K A;  2GU6 A;  3IL0 A;  2MAT A;  2NQ6 A;  2B3L A;  1N51 A;  2BB7 A;  4U6Z A;  4U6E A;  3PEB A;  4FO8 A;  5FCF A;  2OKN A;  3OVK A;  4HXX A;  4PNC A;  2OAZ A;  4U76 A;  1B59 A;  5CLS A;  1WL6 A;  4MAT A;  4RZY A;  2B3K A;  1BOA A;  4U71 A;  4FLJ A;  4U75 A;  3MR1 A;  3MX6 A;  4RGZ 1;  2BWW A;  1M35 A;  5CDL A;  1YW9 A;  4R60 A;  2GU7 A;  4Z7M A;  2GG9 A;  2V3Z A;  5CIK A;  2GTX A;  4ZWP A;  3L24 A;  3BIT A;  4S2T P;  1QZY A;  4QR8 A;  1XGM A;  4U69 A;  3I7M A;  3IU7 A;  5JHU A;  2GU5 A;  4FLL A;  4ZWO A;  1YJ3 A;  4PV4 A;  1WLR A;  4S00 A;  2HOW A;  4FUK A;  2EVM A;  2Q93 A;  4ZNG A;  1W2M A;  2GG3 A;  3O5V A;  1C23 A;  5D6E A;  2GZ5 A;  4U6W A;  3BIQ A;  1C21 A;  1WL9 A;  2GGC A;  4IKU A;  3ROR A;  4A6W A;  3PKB A;  1MAT A;  2V6C A;  2ZSG A;  2GG8 A;  3IG4 A;  5CDE A;  1B6A A;  2BHB A;  1Y1N A;  1PV9 A;  4IF7 A;  2P98 A;  1R5G A;  5E2C A;  2GG5 A;  3FMR A;  4KM3 A;  2BH3 A;  2P9A A;  1WY2 A;  1C22 A;  4FO7 A;  4FKC A;  1XGN A;  4JUQ A;  3FMQ A;  2V3X A;  4ZWU A;  1R58 A;  2ADU A;  4IU6 A;  3TB5 A;  3D27 A;  5CE6 A;  2Q96 A;  1YW7 A;  4IEC A;  2BWV A;  3IU8 A;  5CNX A; 
#chains in the Genus database with same CATH topology
 4IDY A;  5CDV A;  4S01 A;  1KQ9 A;  1XNZ A;  2GU4 A;  5JFR A;  3RVA A;  5D6F A;  4FLI A;  2BHA A;  4OOK A;  2BN7 A;  1QXY A;  2B3H A;  1KP0 A;  2GG2 A;  2EA4 A;  4EGE A;  2Q94 A;  3Q6D A;  1C27 A;  2BWT A;  2BWU A;  4S2R P;  3PKC A;  4IKS A;  2BHD A;  3CTZ A;  2G6P A;  4IPA A;  4A6V A;  1A16 A;  1WKM A;  1XGS A;  2EA2 A;  1XGO A;  3BIP A;  3PKD A;  2BWX A;  1YW8 A;  2GA2 A;  4U6J A;  1QXW A;  1W7V A;  3PKA A;  4U1B A;  4U6C A;  1WN1 A;  4IKR A;  1C24 A;  3MAT A;  2GG0 A;  1KQ0 A;  3CB6 A;  2V3Y A;  1CHM A;  2Q92 A;  4FLK A;  2Q95 A;  3IU9 A;  2BWY A;  2IW2 A;  2BWS A;  3PN9 A;  3S6B A;  2BHC A;  4U73 A;  5E5B A;  4RZZ A;  1O0X A;  3OOO A;  1BN5 A;  4B28 A;  1QXZ A;  5JI6 A;  3TAV A;  4U70 A;  2NQ7 A;  1YVM A;  3CB5 A;  4IKT A;  2GG7 A;  2GGB A;  5FCH A;  2DFI A;  2P99 A;  2EVC A;  1JAW A;  1WBQ A;  2EVO A;  3QOC A;  3PKE A;  1R5H A;  3L7G A;  3FM3 A;  2Q8K A;  2GU6 A;  3IL0 A;  2MAT A;  2NQ6 A;  2B3L A;  1N51 A;  2BB7 A;  4U6Z A;  4U6E A;  3PEB A;  4FO8 A;  5FCF A;  2OKN A;  3OVK A;  4HXX A;  4PNC A;  2OAZ A;  4U76 A;  1B59 A;  5CLS A;  1WL6 A;  4MAT A;  4RZY A;  2B3K A;  1BOA A;  4U71 A;  4FLJ A;  4U75 A;  3MR1 A;  3MX6 A;  4RGZ 1;  2BWW A;  1M35 A;  5CDL A;  1YW9 A;  4R60 A;  2GU7 A;  4Z7M A;  2GG9 A;  2V3Z A;  5CIK A;  2GTX A;  4ZWP A;  3L24 A;  3BIT A;  4S2T P;  1QZY A;  4QR8 A;  1XGM A;  4U69 A;  3I7M A;  3IU7 A;  5JHU A;  2GU5 A;  4FLL A;  4ZWO A;  1YJ3 A;  4PV4 A;  1WLR A;  4S00 A;  2HOW A;  4FUK A;  2EVM A;  2Q93 A;  4ZNG A;  1W2M A;  2GG3 A;  3O5V A;  1C23 A;  5D6E A;  2GZ5 A;  4U6W A;  3BIQ A;  1C21 A;  1WL9 A;  2GGC A;  4IKU A;  3ROR A;  4A6W A;  3PKB A;  1MAT A;  2V6C A;  2ZSG A;  2GG8 A;  3IG4 A;  5CDE A;  1B6A A;  2BHB A;  1Y1N A;  1PV9 A;  4IF7 A;  2P98 A;  1R5G A;  5E2C A;  2GG5 A;  3FMR A;  4KM3 A;  2BH3 A;  2P9A A;  1WY2 A;  1C22 A;  4FO7 A;  4FKC A;  1XGN A;  4JUQ A;  3FMQ A;  2V3X A;  4ZWU A;  1R58 A;  2ADU A;  4IU6 A;  3TB5 A;  3D27 A;  5CE6 A;  2Q96 A;  1YW7 A;  4IEC A;  2BWV A;  3IU8 A;  5CNX A; 
#chains in the Genus database with same CATH homology
 4IDY A;  5CDV A;  4S01 A;  1KQ9 A;  1XNZ A;  2GU4 A;  5JFR A;  3RVA A;  5D6F A;  4FLI A;  2BHA A;  4OOK A;  2BN7 A;  1QXY A;  2B3H A;  1KP0 A;  2GG2 A;  2EA4 A;  4EGE A;  2Q94 A;  3Q6D A;  1C27 A;  2BWT A;  2BWU A;  4S2R P;  3PKC A;  4IKS A;  2BHD A;  3CTZ A;  2G6P A;  4IPA A;  4A6V A;  1A16 A;  1WKM A;  1XGS A;  2EA2 A;  1XGO A;  3BIP A;  3PKD A;  2BWX A;  1YW8 A;  2GA2 A;  4U6J A;  1QXW A;  1W7V A;  3PKA A;  4U1B A;  4U6C A;  1WN1 A;  4IKR A;  1C24 A;  3MAT A;  2GG0 A;  1KQ0 A;  3CB6 A;  2V3Y A;  1CHM A;  2Q92 A;  4FLK A;  2Q95 A;  3IU9 A;  2BWY A;  2IW2 A;  2BWS A;  3PN9 A;  3S6B A;  2BHC A;  4U73 A;  5E5B A;  4RZZ A;  1O0X A;  3OOO A;  1BN5 A;  4B28 A;  1QXZ A;  5JI6 A;  3TAV A;  4U70 A;  2NQ7 A;  1YVM A;  3CB5 A;  4IKT A;  2GG7 A;  2GGB A;  5FCH A;  2DFI A;  2P99 A;  2EVC A;  1JAW A;  1WBQ A;  2EVO A;  3QOC A;  3PKE A;  1R5H A;  3L7G A;  3FM3 A;  2Q8K A;  2GU6 A;  3IL0 A;  2MAT A;  2NQ6 A;  2B3L A;  1N51 A;  2BB7 A;  4U6Z A;  4U6E A;  3PEB A;  4FO8 A;  5FCF A;  2OKN A;  3OVK A;  4HXX A;  4PNC A;  2OAZ A;  4U76 A;  1B59 A;  5CLS A;  1WL6 A;  4MAT A;  4RZY A;  2B3K A;  1BOA A;  4U71 A;  4FLJ A;  4U75 A;  3MR1 A;  3MX6 A;  4RGZ 1;  2BWW A;  1M35 A;  5CDL A;  1YW9 A;  4R60 A;  2GU7 A;  4Z7M A;  2GG9 A;  2V3Z A;  5CIK A;  2GTX A;  4ZWP A;  3L24 A;  3BIT A;  4S2T P;  1QZY A;  4QR8 A;  1XGM A;  4U69 A;  3I7M A;  3IU7 A;  5JHU A;  2GU5 A;  4FLL A;  4ZWO A;  1YJ3 A;  4PV4 A;  1WLR A;  4S00 A;  2HOW A;  4FUK A;  2EVM A;  2Q93 A;  4ZNG A;  1W2M A;  2GG3 A;  3O5V A;  1C23 A;  5D6E A;  2GZ5 A;  4U6W A;  3BIQ A;  1C21 A;  1WL9 A;  2GGC A;  4IKU A;  3ROR A;  4A6W A;  3PKB A;  1MAT A;  2V6C A;  2ZSG A;  2GG8 A;  3IG4 A;  5CDE A;  1B6A A;  2BHB A;  1Y1N A;  1PV9 A;  4IF7 A;  2P98 A;  1R5G A;  5E2C A;  2GG5 A;  3FMR A;  4KM3 A;  2BH3 A;  2P9A A;  1WY2 A;  1C22 A;  4FO7 A;  4FKC A;  1XGN A;  4JUQ A;  3FMQ A;  2V3X A;  4ZWU A;  1R58 A;  2ADU A;  4IU6 A;  3TB5 A;  3D27 A;  5CE6 A;  2Q96 A;  1YW7 A;  4IEC A;  2BWV A;  3IU8 A;  5CNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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