5CNXA

Crystal structure of xaa-pro aminopeptidase from escherichia coli k12
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
360
structure length
360
Chain Sequence
STLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHLLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLTGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Aminopeptidase YpdF
publication title Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
pubmed doi rcsb
source organism Escherichia coli
total genus 121
structure length 360
sequence length 360
chains with identical sequence B, C
ec nomenclature ec 3.4.11.-:
pdb deposition date 2015-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cnxA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cnxA02
3MATA 4IKSA 1A16A 1QXYA 3L7GA 2P9AA 4IU6A 3IL0A 2V3YA 3L24A 4S00A 1WLRA 2NQ7A 4FO8A 4KM3A 3PKAA 1M35A 5CE6A 2GU5A 3IG4A 1YW9A 3MX6A 2P99A 3OOOA 4EGEA 2GTXA 2G6PA 2EA4A 2GG8A 3MR1A 4ZWOA 4U6WA 1PV9A 3PKDA 1KQ9A 4RZYA 3PKCA 3I7MA 2GG3A 4ZWUA 4U75A 2Q94A 4FLLA 1N51A 3RVAA 1MATA 5JHUA 4IDYA 1QXWA 3BIQA 2GU4A 2OAZA 4R60A 2BWYA 2GG9A 3PN9A 2BH3A 4A6WA 3CB6A 3Q6DA 4IECA 1WY2A 1WN1A 1WBQA 3FM3A 2B3KA 1C24A 1B59A 1XGMA 5E2CA 1C22A 4FO7A 4JUQA 2V6CA 3FMRA 3PKEA 4U69A 1YW8A 4U6ZA 2BWSA 4U6EA 2BWVA 4U73A 1Y1NA 5CDLA 1CHMA 1YW7A 4MATA 3PEBA 1XNZA 2GGBA 2Q92A 5D6EA 2MATA 2BWTA 1O0XA 4IPAA 4U6JA 1R5GA 3BIPA 1BOAA 4RZZA 2ADUA 4QR8A 3FMQA 2V3XA 2EVCA 2HOWA 2V3ZA 1JAWA 2GGCA 5FCHA 4U1BA 4U76A 2Q96A 3O5VA 3TB5A 5JI6A 1WL6A 2GG2A 4FLJA 1BN5A 2GZ5A 3IU9A 4IF7A 4HXXA 3OVKA 2BWUA 2GG5A 2Q95A 5FCFA 1C21A 1YVMA 2B3LA 5D6FA 2BHAA 2ZSGA 4FLKA 2BB7A 1W7VA 2BHCA 2BN7A 4PNCA 5CDEA 2EA2A 4PV4A 1XGNA 5CIKA 3TAVA 2BWXA 2P98A 1QZYA 4S2TP 2NQ6A 1C23A 4ZWPA 5CDVA 3D27A 4OOKA 4ZNGA 3CTZA 1KQ0A 4FKCA 2EVOA 2B3HA 3CB5A 4A6VA 2GU7A 3IU7A 1QXZA 2OKNA 1B6AA 4Z7MA 2GG0A 2BHBA 1R58A 4U71A 4IKRA 4IKUA 3QOCA 4FUKA 4U6CA 5CLSA 2GG7A 2EVMA 1W2MA 4IKTA 4RGZ1 2IW2A 1WL9A 1C27A 1R5HA 1XGSA 2GU6A 2Q8KA 5JFRA 4B28A 4S01A 1KP0A 2BHDA 4FLIA 4U70A 3S6BA 2GA2A 2BWWA 5E5BA 3IU8A 2Q93A 4S2RP 3PKBA 3BITA 1WKMA 1YJ3A 3RORA 2DFIA 1XGOA 5CNXA
chains in the Genus database with same CATH superfamily
3MATA 4IKSA 1A16A 1QXYA 3L7GA 2P9AA 4IU6A 3IL0A 2V3YA 3L24A 4S00A 1WLRA 2NQ7A 4FO8A 4KM3A 3PKAA 1M35A 5CE6A 2GU5A 3IG4A 1YW9A 3MX6A 2P99A 3OOOA 4EGEA 2GTXA 2G6PA 2EA4A 2GG8A 3MR1A 4ZWOA 4U6WA 1PV9A 3PKDA 1KQ9A 4RZYA 3PKCA 3I7MA 2GG3A 4ZWUA 4U75A 2Q94A 4FLLA 1N51A 3RVAA 1MATA 5JHUA 4IDYA 1QXWA 3BIQA 2GU4A 2OAZA 4R60A 2BWYA 2GG9A 3PN9A 2BH3A 4A6WA 3CB6A 3Q6DA 4IECA 1WY2A 1WN1A 1WBQA 3FM3A 2B3KA 1C24A 1B59A 1XGMA 5E2CA 1C22A 4FO7A 4JUQA 2V6CA 3FMRA 3PKEA 4U69A 1YW8A 4U6ZA 2BWSA 4U6EA 2BWVA 4U73A 1Y1NA 5CDLA 1CHMA 1YW7A 4MATA 3PEBA 1XNZA 2GGBA 2Q92A 5D6EA 2MATA 2BWTA 1O0XA 4IPAA 4U6JA 1R5GA 3BIPA 1BOAA 4RZZA 2ADUA 4QR8A 3FMQA 2V3XA 2EVCA 2HOWA 2V3ZA 1JAWA 2GGCA 5FCHA 4U1BA 4U76A 2Q96A 3O5VA 3TB5A 5JI6A 1WL6A 2GG2A 4FLJA 1BN5A 2GZ5A 3IU9A 4IF7A 4HXXA 3OVKA 2BWUA 2GG5A 2Q95A 5FCFA 1C21A 1YVMA 2B3LA 5D6FA 2BHAA 2ZSGA 4FLKA 2BB7A 1W7VA 2BHCA 2BN7A 4PNCA 5CDEA 2EA2A 4PV4A 1XGNA 5CIKA 3TAVA 2BWXA 2P98A 1QZYA 4S2TP 2NQ6A 1C23A 4ZWPA 5CDVA 3D27A 4OOKA 4ZNGA 3CTZA 1KQ0A 4FKCA 2EVOA 2B3HA 3CB5A 4A6VA 2GU7A 3IU7A 1QXZA 2OKNA 1B6AA 4Z7MA 2GG0A 2BHBA 1R58A 4U71A 4IKRA 4IKUA 3QOCA 4FUKA 4U6CA 5CLSA 2GG7A 2EVMA 1W2MA 4IKTA 4RGZ1 2IW2A 1WL9A 1C27A 1R5HA 1XGSA 2GU6A 2Q8KA 5JFRA 4B28A 4S01A 1KP0A 2BHDA 4FLIA 4U70A 3S6BA 2GA2A 2BWWA 5E5BA 3IU8A 2Q93A 4S2RP 3PKBA 3BITA 1WKMA 1YJ3A 3RORA 2DFIA 1XGOA 5CNXA
chains in the Genus database with same CATH topology
3MATA 4IKSA 1A16A 1QXYA 3L7GA 2P9AA 4IU6A 3IL0A 2V3YA 3L24A 4S00A 1WLRA 2NQ7A 4FO8A 4KM3A 3PKAA 1M35A 5CE6A 2GU5A 3IG4A 1YW9A 3MX6A 2P99A 3OOOA 4EGEA 2GTXA 2G6PA 2EA4A 2GG8A 3MR1A 4ZWOA 4U6WA 1PV9A 3PKDA 1KQ9A 4RZYA 3PKCA 3I7MA 2GG3A 4ZWUA 4U75A 2Q94A 4FLLA 1N51A 3RVAA 1MATA 5JHUA 4IDYA 1QXWA 3BIQA 2GU4A 2OAZA 4R60A 2BWYA 2GG9A 3PN9A 2BH3A 4A6WA 3CB6A 3Q6DA 4IECA 1WY2A 1WN1A 1WBQA 3FM3A 2B3KA 1C24A 1B59A 1XGMA 5E2CA 1C22A 4FO7A 4JUQA 2V6CA 3FMRA 3PKEA 4U69A 1YW8A 4U6ZA 2BWSA 4U6EA 2BWVA 4U73A 1Y1NA 5CDLA 1CHMA 1YW7A 4MATA 3PEBA 1XNZA 2GGBA 2Q92A 5D6EA 2MATA 2BWTA 1O0XA 4IPAA 4U6JA 1R5GA 3BIPA 1BOAA 4RZZA 2ADUA 4QR8A 3FMQA 2V3XA 2EVCA 2HOWA 2V3ZA 1JAWA 2GGCA 5FCHA 4U1BA 4U76A 2Q96A 3O5VA 3TB5A 5JI6A 1WL6A 2GG2A 4FLJA 1BN5A 2GZ5A 3IU9A 4IF7A 4HXXA 3OVKA 2BWUA 2GG5A 2Q95A 5FCFA 1C21A 1YVMA 2B3LA 5D6FA 2BHAA 2ZSGA 4FLKA 2BB7A 1W7VA 2BHCA 2BN7A 4PNCA 5CDEA 2EA2A 4PV4A 1XGNA 5CIKA 3TAVA 2BWXA 2P98A 1QZYA 4S2TP 2NQ6A 1C23A 4ZWPA 5CDVA 3D27A 4OOKA 4ZNGA 3CTZA 1KQ0A 4FKCA 2EVOA 2B3HA 3CB5A 4A6VA 2GU7A 3IU7A 1QXZA 2OKNA 1B6AA 4Z7MA 2GG0A 2BHBA 1R58A 4U71A 4IKRA 4IKUA 3QOCA 4FUKA 4U6CA 5CLSA 2GG7A 2EVMA 1W2MA 4IKTA 4RGZ1 2IW2A 1WL9A 1C27A 1R5HA 1XGSA 2GU6A 2Q8KA 5JFRA 4B28A 4S01A 1KP0A 2BHDA 4FLIA 4U70A 3S6BA 2GA2A 2BWWA 5E5BA 3IU8A 2Q93A 4S2RP 3PKBA 3BITA 1WKMA 1YJ3A 3RORA 2DFIA 1XGOA 5CNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MAT A;  4IKS A;  1A16 A;  1QXY A;  3L7G A;  2P9A A;  4IU6 A;  3IL0 A;  2V3Y A;  3L24 A;  4S00 A;  1WLR A;  2NQ7 A;  4FO8 A;  4KM3 A;  3PKA A;  1M35 A;  5CE6 A;  2GU5 A;  3IG4 A;  1YW9 A;  3MX6 A;  2P99 A;  3OOO A;  4EGE A;  2GTX A;  2G6P A;  2EA4 A;  2GG8 A;  3MR1 A;  4ZWO A;  4U6W A;  1PV9 A;  3PKD A;  1KQ9 A;  4RZY A;  3PKC A;  3I7M A;  2GG3 A;  4ZWU A;  4U75 A;  2Q94 A;  4FLL A;  1N51 A;  3RVA A;  1MAT A;  5JHU A;  4IDY A;  1QXW A;  3BIQ A;  2GU4 A;  2OAZ A;  4R60 A;  2BWY A;  2GG9 A;  3PN9 A;  2BH3 A;  4A6W A;  3CB6 A;  3Q6D A;  4IEC A;  1WY2 A;  1WN1 A;  1WBQ A;  3FM3 A;  2B3K A;  1C24 A;  1B59 A;  1XGM A;  5E2C A;  1C22 A;  4FO7 A;  4JUQ A;  2V6C A;  3FMR A;  3PKE A;  4U69 A;  1YW8 A;  4U6Z A;  2BWS A;  4U6E A;  2BWV A;  4U73 A;  1Y1N A;  5CDL A;  1CHM A;  1YW7 A;  4MAT A;  3PEB A;  1XNZ A;  2GGB A;  2Q92 A;  5D6E A;  2MAT A;  2BWT A;  1O0X A;  4IPA A;  4U6J A;  1R5G A;  3BIP A;  1BOA A;  4RZZ A;  2ADU A;  4QR8 A;  3FMQ A;  2V3X A;  2EVC A;  2HOW A;  2V3Z A;  1JAW A;  2GGC A;  5FCH A;  4U1B A;  4U76 A;  2Q96 A;  3O5V A;  3TB5 A;  5JI6 A;  1WL6 A;  2GG2 A;  4FLJ A;  1BN5 A;  2GZ5 A;  3IU9 A;  4IF7 A;  4HXX A;  3OVK A;  2BWU A;  2GG5 A;  2Q95 A;  5FCF A;  1C21 A;  1YVM A;  2B3L A;  5D6F A;  2BHA A;  2ZSG A;  4FLK A;  2BB7 A;  1W7V A;  2BHC A;  2BN7 A;  4PNC A;  5CDE A;  2EA2 A;  4PV4 A;  1XGN A;  5CIK A;  3TAV A;  2BWX A;  2P98 A;  1QZY A;  4S2T P;  2NQ6 A;  1C23 A;  4ZWP A;  5CDV A;  3D27 A;  4OOK A;  4ZNG A;  3CTZ A;  1KQ0 A;  4FKC A;  2EVO A;  2B3H A;  3CB5 A;  4A6V A;  2GU7 A;  3IU7 A;  1QXZ A;  2OKN A;  1B6A A;  4Z7M A;  2GG0 A;  2BHB A;  1R58 A;  4U71 A;  4IKR A;  4IKU A;  3QOC A;  4FUK A;  4U6C A;  5CLS A;  2GG7 A;  2EVM A;  1W2M A;  4IKT A;  4RGZ 1;  2IW2 A;  1WL9 A;  1C27 A;  1R5H A;  1XGS A;  2GU6 A;  2Q8K A;  5JFR A;  4B28 A;  4S01 A;  1KP0 A;  2BHD A;  4FLI A;  4U70 A;  3S6B A;  2GA2 A;  2BWW A;  5E5B A;  3IU8 A;  2Q93 A;  4S2R P;  3PKB A;  3BIT A;  1WKM A;  1YJ3 A;  3ROR A;  2DFI A;  1XGO A;  5CNX A; 
#chains in the Genus database with same CATH topology
 3MAT A;  4IKS A;  1A16 A;  1QXY A;  3L7G A;  2P9A A;  4IU6 A;  3IL0 A;  2V3Y A;  3L24 A;  4S00 A;  1WLR A;  2NQ7 A;  4FO8 A;  4KM3 A;  3PKA A;  1M35 A;  5CE6 A;  2GU5 A;  3IG4 A;  1YW9 A;  3MX6 A;  2P99 A;  3OOO A;  4EGE A;  2GTX A;  2G6P A;  2EA4 A;  2GG8 A;  3MR1 A;  4ZWO A;  4U6W A;  1PV9 A;  3PKD A;  1KQ9 A;  4RZY A;  3PKC A;  3I7M A;  2GG3 A;  4ZWU A;  4U75 A;  2Q94 A;  4FLL A;  1N51 A;  3RVA A;  1MAT A;  5JHU A;  4IDY A;  1QXW A;  3BIQ A;  2GU4 A;  2OAZ A;  4R60 A;  2BWY A;  2GG9 A;  3PN9 A;  2BH3 A;  4A6W A;  3CB6 A;  3Q6D A;  4IEC A;  1WY2 A;  1WN1 A;  1WBQ A;  3FM3 A;  2B3K A;  1C24 A;  1B59 A;  1XGM A;  5E2C A;  1C22 A;  4FO7 A;  4JUQ A;  2V6C A;  3FMR A;  3PKE A;  4U69 A;  1YW8 A;  4U6Z A;  2BWS A;  4U6E A;  2BWV A;  4U73 A;  1Y1N A;  5CDL A;  1CHM A;  1YW7 A;  4MAT A;  3PEB A;  1XNZ A;  2GGB A;  2Q92 A;  5D6E A;  2MAT A;  2BWT A;  1O0X A;  4IPA A;  4U6J A;  1R5G A;  3BIP A;  1BOA A;  4RZZ A;  2ADU A;  4QR8 A;  3FMQ A;  2V3X A;  2EVC A;  2HOW A;  2V3Z A;  1JAW A;  2GGC A;  5FCH A;  4U1B A;  4U76 A;  2Q96 A;  3O5V A;  3TB5 A;  5JI6 A;  1WL6 A;  2GG2 A;  4FLJ A;  1BN5 A;  2GZ5 A;  3IU9 A;  4IF7 A;  4HXX A;  3OVK A;  2BWU A;  2GG5 A;  2Q95 A;  5FCF A;  1C21 A;  1YVM A;  2B3L A;  5D6F A;  2BHA A;  2ZSG A;  4FLK A;  2BB7 A;  1W7V A;  2BHC A;  2BN7 A;  4PNC A;  5CDE A;  2EA2 A;  4PV4 A;  1XGN A;  5CIK A;  3TAV A;  2BWX A;  2P98 A;  1QZY A;  4S2T P;  2NQ6 A;  1C23 A;  4ZWP A;  5CDV A;  3D27 A;  4OOK A;  4ZNG A;  3CTZ A;  1KQ0 A;  4FKC A;  2EVO A;  2B3H A;  3CB5 A;  4A6V A;  2GU7 A;  3IU7 A;  1QXZ A;  2OKN A;  1B6A A;  4Z7M A;  2GG0 A;  2BHB A;  1R58 A;  4U71 A;  4IKR A;  4IKU A;  3QOC A;  4FUK A;  4U6C A;  5CLS A;  2GG7 A;  2EVM A;  1W2M A;  4IKT A;  4RGZ 1;  2IW2 A;  1WL9 A;  1C27 A;  1R5H A;  1XGS A;  2GU6 A;  2Q8K A;  5JFR A;  4B28 A;  4S01 A;  1KP0 A;  2BHD A;  4FLI A;  4U70 A;  3S6B A;  2GA2 A;  2BWW A;  5E5B A;  3IU8 A;  2Q93 A;  4S2R P;  3PKB A;  3BIT A;  1WKM A;  1YJ3 A;  3ROR A;  2DFI A;  1XGO A;  5CNX A; 
#chains in the Genus database with same CATH homology
 3MAT A;  4IKS A;  1A16 A;  1QXY A;  3L7G A;  2P9A A;  4IU6 A;  3IL0 A;  2V3Y A;  3L24 A;  4S00 A;  1WLR A;  2NQ7 A;  4FO8 A;  4KM3 A;  3PKA A;  1M35 A;  5CE6 A;  2GU5 A;  3IG4 A;  1YW9 A;  3MX6 A;  2P99 A;  3OOO A;  4EGE A;  2GTX A;  2G6P A;  2EA4 A;  2GG8 A;  3MR1 A;  4ZWO A;  4U6W A;  1PV9 A;  3PKD A;  1KQ9 A;  4RZY A;  3PKC A;  3I7M A;  2GG3 A;  4ZWU A;  4U75 A;  2Q94 A;  4FLL A;  1N51 A;  3RVA A;  1MAT A;  5JHU A;  4IDY A;  1QXW A;  3BIQ A;  2GU4 A;  2OAZ A;  4R60 A;  2BWY A;  2GG9 A;  3PN9 A;  2BH3 A;  4A6W A;  3CB6 A;  3Q6D A;  4IEC A;  1WY2 A;  1WN1 A;  1WBQ A;  3FM3 A;  2B3K A;  1C24 A;  1B59 A;  1XGM A;  5E2C A;  1C22 A;  4FO7 A;  4JUQ A;  2V6C A;  3FMR A;  3PKE A;  4U69 A;  1YW8 A;  4U6Z A;  2BWS A;  4U6E A;  2BWV A;  4U73 A;  1Y1N A;  5CDL A;  1CHM A;  1YW7 A;  4MAT A;  3PEB A;  1XNZ A;  2GGB A;  2Q92 A;  5D6E A;  2MAT A;  2BWT A;  1O0X A;  4IPA A;  4U6J A;  1R5G A;  3BIP A;  1BOA A;  4RZZ A;  2ADU A;  4QR8 A;  3FMQ A;  2V3X A;  2EVC A;  2HOW A;  2V3Z A;  1JAW A;  2GGC A;  5FCH A;  4U1B A;  4U76 A;  2Q96 A;  3O5V A;  3TB5 A;  5JI6 A;  1WL6 A;  2GG2 A;  4FLJ A;  1BN5 A;  2GZ5 A;  3IU9 A;  4IF7 A;  4HXX A;  3OVK A;  2BWU A;  2GG5 A;  2Q95 A;  5FCF A;  1C21 A;  1YVM A;  2B3L A;  5D6F A;  2BHA A;  2ZSG A;  4FLK A;  2BB7 A;  1W7V A;  2BHC A;  2BN7 A;  4PNC A;  5CDE A;  2EA2 A;  4PV4 A;  1XGN A;  5CIK A;  3TAV A;  2BWX A;  2P98 A;  1QZY A;  4S2T P;  2NQ6 A;  1C23 A;  4ZWP A;  5CDV A;  3D27 A;  4OOK A;  4ZNG A;  3CTZ A;  1KQ0 A;  4FKC A;  2EVO A;  2B3H A;  3CB5 A;  4A6V A;  2GU7 A;  3IU7 A;  1QXZ A;  2OKN A;  1B6A A;  4Z7M A;  2GG0 A;  2BHB A;  1R58 A;  4U71 A;  4IKR A;  4IKU A;  3QOC A;  4FUK A;  4U6C A;  5CLS A;  2GG7 A;  2EVM A;  1W2M A;  4IKT A;  4RGZ 1;  2IW2 A;  1WL9 A;  1C27 A;  1R5H A;  1XGS A;  2GU6 A;  2Q8K A;  5JFR A;  4B28 A;  4S01 A;  1KP0 A;  2BHD A;  4FLI A;  4U70 A;  3S6B A;  2GA2 A;  2BWW A;  5E5B A;  3IU8 A;  2Q93 A;  4S2R P;  3PKB A;  3BIT A;  1WKM A;  1YJ3 A;  3ROR A;  2DFI A;  1XGO A;  5CNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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