5COWA

C. remanei pgl-1 dimerization domain
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
234
structure length
234
Chain Sequence
DKFTYLLLQPLTEATLSDAVNFIVEKYSAELPDEGDASLVVRSQLGCQFFFLVTRTLAHDQRELAKLVQTLIPRPVRLEVFPGLQRSVFKSSVFLGHHIIQIFMGAKKPFQDWSFVGLAQDFECPWRRLAIAELLKKFSVSVVEKVFDNPVALIPQHESDNEALIELVTNALRFALWIVEFYETETNEKSIKELAFLDHSSKTLLIESFTKFLQGKDVKDQDHLKRIIDALEKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative uncharacterized protein
publication title PGL germ granule assembly protein is a base-specific, single-stranded RNase.
pubmed doi rcsb
source organism Caenorhabditis remanei
total genus 92
structure length 234
sequence length 234
ec nomenclature ec 3.1.27.3: Ribonuclease T(1).
pdb deposition date 2015-07-20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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