5CVWA

Crystal structure of rtx domain block v of adenylate cyclase toxin from bordetella pertussis
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
150
structure length
150
Chain Sequence
GSARDDVLIGDAGANVLNGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Toxin
molecule keywords Bifunctional hemolysin/adenylate cyclase
publication title Calcium-Driven Folding of RTX Domain beta-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.
pubmed doi rcsb
source organism Bordetella pertussis (strain atcc 9797 / dsm 5571 / nctc 10739 / 18323)
total genus 49
structure length 150
sequence length 150
ec nomenclature ec 4.6.1.1: Adenylate cyclase.
pdb deposition date 2015-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00353 HemolysinCabind RTX calcium-binding nonapeptide repeat (4 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 5cvwA00
1GO8P 1K7IA 2ML2A 3HBUP 3VI1A 1SMPA 1H71P 5CVWA 1OM7A 2Z8XA 3A70A 3HBVP 1GO7P 1G9KA 2XQHA 3NTNA 1KAPP 2YO1A 2ZJ7A 3A6ZA 5CXLA 1OM6A 1SATA 1O0QA 3LA9A 2ZVDA 1OM8A 1P9HA 1O0TA 3ULTA 1JIWP 3HDAP 2AGMA 3WP8A 1AF0A 1AKLA 1K7QA 2YO0A 1OMJA 2QUAA 2Z8ZA 3S6LA 3U1RA 1K7GA 3LAAA 5D7WA 3HB2P 2QUBA 2ZJ6A 4I35A 1SRPA
chains in the Genus database with same CATH superfamily
1GO8P 1K7IA 2ML2A 3HBUP 3VI1A 1SMPA 1H71P 5CVWA 1OM7A 2Z8XA 4DT5A 3A70A 3HBVP 1GO7P 1G9KA 2XQHA 3NTNA 1KAPP 2YO1A 2ZJ7A 3A6ZA 5CXLA 1OM6A 1SATA 1O0QA 3LA9A 2ZVDA 1OM8A 1P9HA 1O0TA 3ULTA 1JIWP 3HDAP 2AGMA 3WP8A 1AF0A 1AKLA 1K7QA 2YO0A 1OMJA 2QUAA 2Z8ZA 3S6LA 3U1RA 1K7GA 3LAAA 5D7WA 3HB2P 2QUBA 2ZJ6A 4I35A 1SRPA
chains in the Genus database with same CATH topology
1GO8P 1K7IA 2ML2A 3HBUP 3VI1A 1SMPA 1H71P 5CVWA 1OM7A 2Z8XA 3A70A 3HBVP 1GO7P 1G9KA 2XQHA 3NTNA 1KAPP 2YO1A 2ZJ7A 3A6ZA 5CXLA 1OM6A 1SATA 1O0QA 3LA9A 2ZVDA 1OM8A 1P9HA 1O0TA 3ULTA 1JIWP 3HDAP 2AGMA 3WP8A 1AF0A 1AKLA 1K7QA 2YO0A 1OMJA 2QUAA 2Z8ZA 3S6LA 3U1RA 1K7GA 3LAAA 5D7WA 3HB2P 2QUBA 2ZJ6A 4I35A 1SRPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GO8 P;  1K7I A;  2ML2 A;  3HBU P;  3VI1 A;  1SMP A;  1H71 P;  5CVW A;  1OM7 A;  2Z8X A;  3A70 A;  3HBV P;  1GO7 P;  1G9K A;  2XQH A;  3NTN A;  1KAP P;  2YO1 A;  2ZJ7 A;  3A6Z A;  5CXL A;  1OM6 A;  1SAT A;  1O0Q A;  3LA9 A;  2ZVD A;  1OM8 A;  1P9H A;  1O0T A;  3ULT A;  1JIW P;  3HDA P;  2AGM A;  3WP8 A;  1AF0 A;  1AKL A;  1K7Q A;  2YO0 A;  1OMJ A;  2QUA A;  2Z8Z A;  3S6L A;  3U1R A;  1K7G A;  3LAA A;  5D7W A;  3HB2 P;  2QUB A;  2ZJ6 A;  4I35 A;  1SRP A; 
#chains in the Genus database with same CATH topology
 1GO8 P;  1K7I A;  2ML2 A;  3HBU P;  3VI1 A;  1SMP A;  1H71 P;  5CVW A;  1OM7 A;  2Z8X A;  4DT5 A;  3A70 A;  3HBV P;  1GO7 P;  1G9K A;  2XQH A;  3NTN A;  1KAP P;  2YO1 A;  2ZJ7 A;  3A6Z A;  5CXL A;  1OM6 A;  1SAT A;  1O0Q A;  3LA9 A;  2ZVD A;  1OM8 A;  1P9H A;  1O0T A;  3ULT A;  1JIW P;  3HDA P;  2AGM A;  3WP8 A;  1AF0 A;  1AKL A;  1K7Q A;  2YO0 A;  1OMJ A;  2QUA A;  2Z8Z A;  3S6L A;  3U1R A;  1K7G A;  3LAA A;  5D7W A;  3HB2 P;  2QUB A;  2ZJ6 A;  4I35 A;  1SRP A; 
#chains in the Genus database with same CATH homology
 1GO8 P;  1K7I A;  2ML2 A;  3HBU P;  3VI1 A;  1SMP A;  1H71 P;  5CVW A;  1OM7 A;  2Z8X A;  3A70 A;  3HBV P;  1GO7 P;  1G9K A;  2XQH A;  3NTN A;  1KAP P;  2YO1 A;  2ZJ7 A;  3A6Z A;  5CXL A;  1OM6 A;  1SAT A;  1O0Q A;  3LA9 A;  2ZVD A;  1OM8 A;  1P9H A;  1O0T A;  3ULT A;  1JIW P;  3HDA P;  2AGM A;  3WP8 A;  1AF0 A;  1AKL A;  1K7Q A;  2YO0 A;  1OMJ A;  2QUA A;  2Z8Z A;  3S6L A;  3U1R A;  1K7G A;  3LAA A;  5D7W A;  3HB2 P;  2QUB A;  2ZJ6 A;  4I35 A;  1SRP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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