5CWXA

Structure of xoo1075, a peptide deformylase from xanthomonas oryzae pv oryzae, in complex with fragment 134
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
170
structure length
161
Chain Sequence
MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFDDVLSYD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Peptide deformylase
publication title Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryzae, in complex with fragment 134
rcsb
source organism Xanthomonas oryzae pv. oryzae kacc10331
total genus 45
structure length 161
sequence length 170
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2015-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 5cwxA00
3U04A 4DR8A 2AI9A 5JF4A 1DFFA 5JEYA 2EW6A 1BS6A 5CWXA 5CY8A 1VEVA 3G5PA 5CVPA 2EW7A 1ZXZA 5CX0A 4DR9A 5JF2A 4E9BA 1SZZA 5JF1A 5KOBA 1WS0A 2AI7A 4JE8A 5CP0A 3U7NA 1LQWA 4AL3A 3PN5A 4JE7A 3E3UA 1XEOA 5HGWA 3M6PA 1BSJA 4AL2A 1RQCA 4E9AA 1G2AA 1VEZA 5I2BA 1BS5A 4WXLA 1BS7A 3CMDA 1LRUA 3U7KA 3PN3A 2OKLA 1XENA 5CWYA 3UWBA 1LM6A 2OS1A 2W3TA 5JEXA 3SVJP 3M6OA 2AI8A 5CXJA 5JF5A 3PN2A 1WS1A 3SW8P 1RL4A 5CVKA 4JE6A 1Q1YA 1N5NA 1Y6HA 3O3JA 3FWXA 1LMEA 2KMNA 4NT8A 3M6RA 4AZ4A 1JYMA 2EW5A 1LRYA 3L87A 3U7MA 5T8ZA 5J46A 1G27A 5CPDA 5JF6A 1V3YA 3U7LA 1BSKA 3STRP 1XEMA 3PN4A 2AIEP 1S17A 1ICJA 5JEZA 2AIAA 1BS8A 4EOXP 2DEFA 1BS4A 1LQYA 1ZY0A 2OS0A 5JF7A 3PN6A 5JF8A 1LMHA 1ZY1A 5E5DA 2OS3A 3K6LA 1BSZA 1LM4A 3G6NA 3OCAA 5CVQA 1SV2A 5JF3A 1DEFA 1VEYA 5CY7A 3G5KA 3CPMA 3M6QA 4WXKA 1IX1A 5JF0A 3UWAA 3QU1A 2W3UA
chains in the Genus database with same CATH superfamily
3U04A 4DR8A 2AI9A 5JF4A 1DFFA 5JEYA 2EW6A 1BS6A 5CWXA 5CY8A 1VEVA 3G5PA 5CVPA 2EW7A 1ZXZA 5CX0A 4DR9A 5JF2A 4E9BA 1SZZA 5JF1A 5KOBA 1WS0A 2AI7A 4JE8A 5CP0A 3U7NA 1LQWA 4AL3A 3PN5A 4JE7A 3E3UA 1XEOA 5HGWA 3M6PA 1BSJA 4AL2A 1RQCA 4E9AA 1G2AA 1VEZA 5I2BA 1BS5A 4WXLA 1BS7A 3CMDA 1LRUA 3U7KA 3PN3A 2OKLA 1XENA 5CWYA 3UWBA 1LM6A 2OS1A 2W3TA 5JEXA 3SVJP 3M6OA 2AI8A 5CXJA 5JF5A 3PN2A 1WS1A 3SW8P 1RL4A 5CVKA 4JE6A 1Q1YA 1N5NA 1Y6HA 3O3JA 3FWXA 1LMEA 2KMNA 4NT8A 3M6RA 4AZ4A 1JYMA 2EW5A 1LRYA 3L87A 3U7MA 5T8ZA 5J46A 1G27A 5CPDA 5JF6A 1V3YA 3U7LA 1BSKA 3STRP 1XEMA 3PN4A 2AIEP 1S17A 1ICJA 5JEZA 2AIAA 1BS8A 4EOXP 2DEFA 1BS4A 1LQYA 1ZY0A 2OS0A 5JF7A 3PN6A 5JF8A 1LMHA 1ZY1A 5E5DA 2OS3A 3K6LA 1BSZA 1LM4A 3G6NA 3OCAA 5CVQA 1SV2A 5JF3A 1DEFA 1VEYA 5CY7A 3G5KA 3CPMA 3M6QA 4WXKA 1IX1A 5JF0A 3UWAA 3QU1A 2W3UA
chains in the Genus database with same CATH topology
3U04A 4DR8A 2AI9A 5JF4A 1DFFA 5JEYA 2EW6A 1BS6A 5CWXA 5CY8A 1VEVA 3G5PA 5CVPA 2EW7A 1ZXZA 5CX0A 4DR9A 5JF2A 4E9BA 1SZZA 5JF1A 5KOBA 1WS0A 2AI7A 4JE8A 5CP0A 3U7NA 1LQWA 4AL3A 3PN5A 4JE7A 3E3UA 1XEOA 5HGWA 3M6PA 1BSJA 4AL2A 1RQCA 4E9AA 1G2AA 1VEZA 5I2BA 1BS5A 4WXLA 1BS7A 3CMDA 1LRUA 3U7KA 3PN3A 2OKLA 1XENA 5CWYA 3UWBA 1LM6A 2OS1A 2W3TA 5JEXA 3SVJP 3M6OA 2AI8A 5CXJA 5JF5A 3PN2A 1WS1A 3SW8P 1RL4A 5CVKA 4JE6A 1Q1YA 1N5NA 1Y6HA 3O3JA 3FWXA 1LMEA 2KMNA 4NT8A 3M6RA 4AZ4A 1JYMA 2EW5A 1LRYA 3L87A 3U7MA 5T8ZA 5J46A 1G27A 5CPDA 5JF6A 1V3YA 3U7LA 1BSKA 3STRP 1XEMA 3PN4A 2AIEP 1S17A 1ICJA 5JEZA 2AIAA 1BS8A 4EOXP 2DEFA 1BS4A 1LQYA 1ZY0A 2OS0A 5JF7A 3PN6A 5JF8A 1LMHA 1ZY1A 5E5DA 2OS3A 3K6LA 1BSZA 1LM4A 3G6NA 3OCAA 5CVQA 1SV2A 5JF3A 1DEFA 1VEYA 5CY7A 3G5KA 3CPMA 3M6QA 4WXKA 1IX1A 5JF0A 3UWAA 3QU1A 2W3UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U04 A;  4DR8 A;  2AI9 A;  5JF4 A;  1DFF A;  5JEY A;  2EW6 A;  1BS6 A;  5CWX A;  5CY8 A;  1VEV A;  3G5P A;  5CVP A;  2EW7 A;  1ZXZ A;  5CX0 A;  4DR9 A;  5JF2 A;  4E9B A;  1SZZ A;  5JF1 A;  5KOB A;  1WS0 A;  2AI7 A;  4JE8 A;  5CP0 A;  3U7N A;  1LQW A;  4AL3 A;  3PN5 A;  4JE7 A;  3E3U A;  1XEO A;  5HGW A;  3M6P A;  1BSJ A;  4AL2 A;  1RQC A;  4E9A A;  1G2A A;  1VEZ A;  5I2B A;  1BS5 A;  4WXL A;  1BS7 A;  3CMD A;  1LRU A;  3U7K A;  3PN3 A;  2OKL A;  1XEN A;  5CWY A;  3UWB A;  1LM6 A;  2OS1 A;  2W3T A;  5JEX A;  3SVJ P;  3M6O A;  2AI8 A;  5CXJ A;  5JF5 A;  3PN2 A;  1WS1 A;  3SW8 P;  1RL4 A;  5CVK A;  4JE6 A;  1Q1Y A;  1N5N A;  1Y6H A;  3O3J A;  3FWX A;  1LME A;  2KMN A;  4NT8 A;  3M6R A;  4AZ4 A;  1JYM A;  2EW5 A;  1LRY A;  3L87 A;  3U7M A;  5T8Z A;  5J46 A;  1G27 A;  5CPD A;  5JF6 A;  1V3Y A;  3U7L A;  1BSK A;  3STR P;  1XEM A;  3PN4 A;  2AIE P;  1S17 A;  1ICJ A;  5JEZ A;  2AIA A;  1BS8 A;  4EOX P;  2DEF A;  1BS4 A;  1LQY A;  1ZY0 A;  2OS0 A;  5JF7 A;  3PN6 A;  5JF8 A;  1LMH A;  1ZY1 A;  5E5D A;  2OS3 A;  3K6L A;  1BSZ A;  1LM4 A;  3G6N A;  3OCA A;  5CVQ A;  1SV2 A;  5JF3 A;  1DEF A;  1VEY A;  5CY7 A;  3G5K A;  3CPM A;  3M6Q A;  4WXK A;  1IX1 A;  5JF0 A;  3UWA A;  3QU1 A;  2W3U A; 
#chains in the Genus database with same CATH topology
 3U04 A;  4DR8 A;  2AI9 A;  5JF4 A;  1DFF A;  5JEY A;  2EW6 A;  1BS6 A;  5CWX A;  5CY8 A;  1VEV A;  3G5P A;  5CVP A;  2EW7 A;  1ZXZ A;  5CX0 A;  4DR9 A;  5JF2 A;  4E9B A;  1SZZ A;  5JF1 A;  5KOB A;  1WS0 A;  2AI7 A;  4JE8 A;  5CP0 A;  3U7N A;  1LQW A;  4AL3 A;  3PN5 A;  4JE7 A;  3E3U A;  1XEO A;  5HGW A;  3M6P A;  1BSJ A;  4AL2 A;  1RQC A;  4E9A A;  1G2A A;  1VEZ A;  5I2B A;  1BS5 A;  4WXL A;  1BS7 A;  3CMD A;  1LRU A;  3U7K A;  3PN3 A;  2OKL A;  1XEN A;  5CWY A;  3UWB A;  1LM6 A;  2OS1 A;  2W3T A;  5JEX A;  3SVJ P;  3M6O A;  2AI8 A;  5CXJ A;  5JF5 A;  3PN2 A;  1WS1 A;  3SW8 P;  1RL4 A;  5CVK A;  4JE6 A;  1Q1Y A;  1N5N A;  1Y6H A;  3O3J A;  3FWX A;  1LME A;  2KMN A;  4NT8 A;  3M6R A;  4AZ4 A;  1JYM A;  2EW5 A;  1LRY A;  3L87 A;  3U7M A;  5T8Z A;  5J46 A;  1G27 A;  5CPD A;  5JF6 A;  1V3Y A;  3U7L A;  1BSK A;  3STR P;  1XEM A;  3PN4 A;  2AIE P;  1S17 A;  1ICJ A;  5JEZ A;  2AIA A;  1BS8 A;  4EOX P;  2DEF A;  1BS4 A;  1LQY A;  1ZY0 A;  2OS0 A;  5JF7 A;  3PN6 A;  5JF8 A;  1LMH A;  1ZY1 A;  5E5D A;  2OS3 A;  3K6L A;  1BSZ A;  1LM4 A;  3G6N A;  3OCA A;  5CVQ A;  1SV2 A;  5JF3 A;  1DEF A;  1VEY A;  5CY7 A;  3G5K A;  3CPM A;  3M6Q A;  4WXK A;  1IX1 A;  5JF0 A;  3UWA A;  3QU1 A;  2W3U A; 
#chains in the Genus database with same CATH homology
 3U04 A;  4DR8 A;  2AI9 A;  5JF4 A;  1DFF A;  5JEY A;  2EW6 A;  1BS6 A;  5CWX A;  5CY8 A;  1VEV A;  3G5P A;  5CVP A;  2EW7 A;  1ZXZ A;  5CX0 A;  4DR9 A;  5JF2 A;  4E9B A;  1SZZ A;  5JF1 A;  5KOB A;  1WS0 A;  2AI7 A;  4JE8 A;  5CP0 A;  3U7N A;  1LQW A;  4AL3 A;  3PN5 A;  4JE7 A;  3E3U A;  1XEO A;  5HGW A;  3M6P A;  1BSJ A;  4AL2 A;  1RQC A;  4E9A A;  1G2A A;  1VEZ A;  5I2B A;  1BS5 A;  4WXL A;  1BS7 A;  3CMD A;  1LRU A;  3U7K A;  3PN3 A;  2OKL A;  1XEN A;  5CWY A;  3UWB A;  1LM6 A;  2OS1 A;  2W3T A;  5JEX A;  3SVJ P;  3M6O A;  2AI8 A;  5CXJ A;  5JF5 A;  3PN2 A;  1WS1 A;  3SW8 P;  1RL4 A;  5CVK A;  4JE6 A;  1Q1Y A;  1N5N A;  1Y6H A;  3O3J A;  3FWX A;  1LME A;  2KMN A;  4NT8 A;  3M6R A;  4AZ4 A;  1JYM A;  2EW5 A;  1LRY A;  3L87 A;  3U7M A;  5T8Z A;  5J46 A;  1G27 A;  5CPD A;  5JF6 A;  1V3Y A;  3U7L A;  1BSK A;  3STR P;  1XEM A;  3PN4 A;  2AIE P;  1S17 A;  1ICJ A;  5JEZ A;  2AIA A;  1BS8 A;  4EOX P;  2DEF A;  1BS4 A;  1LQY A;  1ZY0 A;  2OS0 A;  5JF7 A;  3PN6 A;  5JF8 A;  1LMH A;  1ZY1 A;  5E5D A;  2OS3 A;  3K6L A;  1BSZ A;  1LM4 A;  3G6N A;  3OCA A;  5CVQ A;  1SV2 A;  5JF3 A;  1DEF A;  1VEY A;  5CY7 A;  3G5K A;  3CPM A;  3M6Q A;  4WXK A;  1IX1 A;  5JF0 A;  3UWA A;  3QU1 A;  2W3U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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