5D5GB

Structure of colocasia esculenta agglutinin
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
110
structure length
110
Chain Sequence
NIPFTNNLLFSGQVLYGDGRLTAKSHQLVMQGDCNLVLYGGKYGWQSNTHGNGEHCFLRLNHKGELIIKDDDFKTIWSSSSSSKHGDYVLILRDDGFAVIYGPAIWETSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Tuber agglutinin
publication title Crystal structure Colocasia esculenta tuber agglutinin at 1.74A resolution and its quaternary interactions
doi rcsb
total genus 21
structure length 110
sequence length 110
chains with identical sequence D
ec nomenclature
pdb deposition date 2015-08-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 5d5gB00
1BWUD 3A0DA 3R0EB 5D5GA 1BWUP 1KJ1A 3MEZA 1MSAA 3M7HA 4PDTA 1B2PA 5T1XB 1BWUA 1NPLA 2D04B 3M7JA 5J76A 5D5GB 5D9ZA 1XD5A 3MEZB 3A0EA 4GC2A 4TKCA 2DPFA 4GC1A 1BWUQ 4H3OA 5T20A 1DLPA 3A0CA 3DZWA 5D9ZB 5J76B 1XD6A 3R0EA 5T20B 1JPCA 1KJ1D 5T1XA 2D04A 1NIVA
chains in the Genus database with same CATH superfamily
1BWUD 3A0DA 3R0EB 5D5GA 1BWUP 1KJ1A 3MEZA 1MSAA 3M7HA 4PDTA 1B2PA 5T1XB 4OKCA 1BWUA 1NPLA 2D04B 3M7JA 5J76A 5D5GB 5D9ZA 1XD5A 3MEZB 3A0EA 4GC2A 4TKCA 2DPFA 4GC1A 1BWUQ 4H3OA 4LEAA 5T20A 1DLPA 3A0CA 3DZWA 5D9ZB 5J76B 1XD6A 4LEDA 3R0EA 4OITA 5T20B 4LE7A 1JPCA 1KJ1D 5T1XA 4OIZA 2D04A 1NIVA
chains in the Genus database with same CATH topology
1BWUD 3A0DA 3R0EB 5D5GA 1BWUP 1KJ1A 3MEZA 1MSAA 3M7HA 4PDTA 1B2PA 5T1XB 1BWUA 1NPLA 2D04B 3M7JA 5J76A 5D5GB 5D9ZA 1XD5A 3MEZB 3A0EA 4GC2A 4TKCA 2DPFA 4GC1A 1BWUQ 4H3OA 5T20A 1DLPA 3A0CA 3DZWA 5D9ZB 5J76B 1XD6A 3R0EA 5T20B 1JPCA 1KJ1D 5T1XA 2D04A 1NIVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BWU D;  3A0D A;  3R0E B;  5D5G A;  1BWU P;  1KJ1 A;  3MEZ A;  1MSA A;  3M7H A;  4PDT A;  1B2P A;  5T1X B;  1BWU A;  1NPL A;  2D04 B;  3M7J A;  5J76 A;  5D5G B;  5D9Z A;  1XD5 A;  3MEZ B;  3A0E A;  4GC2 A;  4TKC A;  2DPF A;  4GC1 A;  1BWU Q;  4H3O A;  5T20 A;  1DLP A;  3A0C A;  3DZW A;  5D9Z B;  5J76 B;  1XD6 A;  3R0E A;  5T20 B;  1JPC A;  1KJ1 D;  5T1X A;  2D04 A;  1NIV A; 
#chains in the Genus database with same CATH topology
 1BWU D;  3A0D A;  3R0E B;  5D5G A;  1BWU P;  1KJ1 A;  3MEZ A;  1MSA A;  3M7H A;  4PDT A;  1B2P A;  5T1X B;  4OKC A;  1BWU A;  1NPL A;  2D04 B;  3M7J A;  5J76 A;  5D5G B;  5D9Z A;  1XD5 A;  3MEZ B;  3A0E A;  4GC2 A;  4TKC A;  2DPF A;  4GC1 A;  1BWU Q;  4H3O A;  4LEA A;  5T20 A;  1DLP A;  3A0C A;  3DZW A;  5D9Z B;  5J76 B;  1XD6 A;  4LED A;  3R0E A;  4OIT A;  5T20 B;  4LE7 A;  1JPC A;  1KJ1 D;  5T1X A;  4OIZ A;  2D04 A;  1NIV A; 
#chains in the Genus database with same CATH homology
 1BWU D;  3A0D A;  3R0E B;  5D5G A;  1BWU P;  1KJ1 A;  3MEZ A;  1MSA A;  3M7H A;  4PDT A;  1B2P A;  5T1X B;  1BWU A;  1NPL A;  2D04 B;  3M7J A;  5J76 A;  5D5G B;  5D9Z A;  1XD5 A;  3MEZ B;  3A0E A;  4GC2 A;  4TKC A;  2DPF A;  4GC1 A;  1BWU Q;  4H3O A;  5T20 A;  1DLP A;  3A0C A;  3DZW A;  5D9Z B;  5J76 B;  1XD6 A;  3R0E A;  5T20 B;  1JPC A;  1KJ1 D;  5T1X A;  2D04 A;  1NIV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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