5DNSA

T1428 loop variant in p3221
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
221
structure length
221
Chain Sequence
MNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYANLHHANLSRANLRSADLRNANLSHANLSGANLEEANLEAANLRGANLVGANLSGADLQEANLTQAMLGQTYPWGTVGADLSDANLEQADLAGAQLVGAVLDGANLHGANLNNANLDNAMLTRANLEQADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords t1428 beta1 loop design
publication title Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension.
pubmed doi rcsb
source organism Synthetic construct
total genus 84
structure length 221
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-09-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 5dnsA00
2O6WA 2J8KA 2QZAA 4YEIA 2XT4A 3NAWA 2XTWA 3NB2A 4YFOA 3SQVA 2XTYA 3DU1X 4YC5A 5DNSA 4YDTA 3SY2A 3PSSA 4YCQA 2QYUA 3PSZA 2XTXA 2XT2A
chains in the Genus database with same CATH superfamily
2VJIA 4XORA 1KTWA 4XMYA 4W8SA 4Z03A 2VBKA 3NAWA 1O8DA 4JRAC 4KH3A 5JLVC 2NTQA 2F3LA 2IQ7A 3VMVA 2Z8GA 2PYGA 4C2LA 2X3HA 2W7ZA 1O8FA 3T9GA 5C1EA 4U49A 1JTAA 4XLFA 2IOUG 1QA2A 1EE6A 2NSTA 3BH6B 1L1IA 3KRGA 1TSPA 1OFEA 2XTYA 1RWRA 3SZEA 4NK8A 1AIRA 4OJLA 2J8IA 3GRHA 3WWGA 3SY2A 4I84A 1KCDA 2BSPA 1IDJA 4OJ5A 1VBLA 1XG2A 1O8HA 3PSSA 2NZMA 2VFNA 3AK5A 4URRA 4XKWA 1OOCA 3TH0A 3LJYA 2VFQA 4XR6A 2NT9A 1DBGA 2O6WA 3EQOA 2QZAA 2INVA 2UVEA 2B0RA 1HF2A 4MR0A 2O04A 1QCXA 3JX8A 1O8LA 3EQNA 1GQ8A 4XLHA 5JMCB 2O17A 1O8GA 5AMVA 3VSVA 1LLWA 3H09A 2O0VA 1OGMX 3RIQA 1WXRA 4XOPA 4YFOA 2VFMA 5C1CA 3VSTA 2QX3A 2VFPA 2X6YA 1TYWA 4V02C 2BM5A 3UW0A 2VFOA 3LYCA 2XC1A 1TYVA 2NSPA 2QXZA 1JRGA 2PYHA 4OPWA 1IA5A 1PE9A 1PLUA 2X85A 1WMRA 4HWVA 4YCQA 2QYUA 1HG8A 3PSZA 4AVZA 3P4GA 1KQ5A 3JURA 3LMWA 3SUCA 4OM9A 1K5CA 1O8EA 1QA3A 2J8KA 3FY3A 4YEIA 4XN3A 1OGOX 2NTPA 2XT4A 4OJ6A 4XONA 1LLZA 3B4NA 4XM3A 4OJPA 4W8QA 1O8MA 1O8IA 1QQ1A 2XTWA 4XNFA 2NT6A 2BX6A 4XLEA 1KCCA 1DABA 4XQFA 3BH7B 2ODLA 3SQVA 1EA0A 1OFMA 1QRBA 2O0WA 2VBEA 1O8JA 3PETA 1OFDA 4XKVA 1CZFA 3GQ8A 3DU1X 5DNSA 1EZGA 3GQ9A 2NTBA 1QA1A 4YZ0A 2EWEA 2UVFA 4U4BA 3B8YA 2G0YA 1IB4A 3GQ7A 3N6ZA 4MXNA 1TYUA 2XTXA 1O8KA 2VJJA 4W8RA 1BN8A 2VBMA 4YELA 4OZYA 2XT2A 2YUHA 1DBOA 1OFLA 3ZSCA 4XN0A 1RMGA 1QRCA 1X0CA 1O88A 1CLWA 2QY1A 1IDKA 2BM6A 2V5IA 3N90A 3ML3A 3NB2A 4OZZA 4W8TA 4XL9A 3SYJA 1NHCA 2X6WA 1BHEA 3ZPPA 2BM4A 2X6XA 3GQAA 1LM1A 1TYXA 2INUA 4YEJA 4XOTA 4PMHA 2PECA 4YC5A 4YZQA 4XLCA 4YZAA 4OJOA 1RU4A 3B90A 1K4ZA 4YDTA 4YZXA 3VMWA 4EW9A 4NK6A 1QJVA 3VSUA 1H80A 1PXZA 4XLAA 4Z06A 2BM7A 1K8FA 4Z05A 2O1DA
chains in the Genus database with same CATH topology
2O6WA 2J8KA 2QZAA 4YEIA 2XT4A 3NAWA 2XTWA 3NB2A 4YFOA 3SQVA 2XTYA 3DU1X 4YC5A 5DNSA 4YDTA 3SY2A 3PSSA 4YCQA 2QYUA 3PSZA 2XTXA 2XT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O6W A;  2J8K A;  2QZA A;  4YEI A;  2XT4 A;  3NAW A;  2XTW A;  3NB2 A;  4YFO A;  3SQV A;  2XTY A;  3DU1 X;  4YC5 A;  5DNS A;  4YDT A;  3SY2 A;  3PSS A;  4YCQ A;  2QYU A;  3PSZ A;  2XTX A;  2XT2 A; 
#chains in the Genus database with same CATH topology
 2VJI A;  4XOR A;  1KTW A;  4XMY A;  4W8S A;  4Z03 A;  2VBK A;  3NAW A;  1O8D A;  4JRA C;  4KH3 A;  5JLV C;  2NTQ A;  2F3L A;  2IQ7 A;  3VMV A;  2Z8G A;  2PYG A;  4C2L A;  2X3H A;  2W7Z A;  1O8F A;  3T9G A;  5C1E A;  4U49 A;  1JTA A;  4XLF A;  2IOU G;  1QA2 A;  1EE6 A;  2NST A;  3BH6 B;  1L1I A;  3KRG A;  1TSP A;  1OFE A;  2XTY A;  1RWR A;  3SZE A;  4NK8 A;  1AIR A;  4OJL A;  2J8I A;  3GRH A;  3WWG A;  3SY2 A;  4I84 A;  1KCD A;  2BSP A;  1IDJ A;  4OJ5 A;  1VBL A;  1XG2 A;  1O8H A;  3PSS A;  2NZM A;  2VFN A;  3AK5 A;  4URR A;  4XKW A;  1OOC A;  3TH0 A;  3LJY A;  2VFQ A;  4XR6 A;  2NT9 A;  1DBG A;  2O6W A;  3EQO A;  2QZA A;  2INV A;  2UVE A;  2B0R A;  1HF2 A;  4MR0 A;  2O04 A;  1QCX A;  3JX8 A;  1O8L A;  3EQN A;  1GQ8 A;  4XLH A;  5JMC B;  2O17 A;  1O8G A;  5AMV A;  3VSV A;  1LLW A;  3H09 A;  2O0V A;  1OGM X;  3RIQ A;  1WXR A;  4XOP A;  4YFO A;  2VFM A;  5C1C A;  3VST A;  2QX3 A;  2VFP A;  2X6Y A;  1TYW A;  4V02 C;  2BM5 A;  3UW0 A;  2VFO A;  3LYC A;  2XC1 A;  1TYV A;  2NSP A;  2QXZ A;  1JRG A;  2PYH A;  4OPW A;  1IA5 A;  1PE9 A;  1PLU A;  2X85 A;  1WMR A;  4HWV A;  4YCQ A;  2QYU A;  1HG8 A;  3PSZ A;  4AVZ A;  3P4G A;  1KQ5 A;  3JUR A;  3LMW A;  3SUC A;  4OM9 A;  1K5C A;  1O8E A;  1QA3 A;  2J8K A;  3FY3 A;  4YEI A;  4XN3 A;  1OGO X;  2NTP A;  2XT4 A;  4OJ6 A;  4XON A;  1LLZ A;  3B4N A;  4XM3 A;  4OJP A;  4W8Q A;  1O8M A;  1O8I A;  1QQ1 A;  2XTW A;  4XNF A;  2NT6 A;  2BX6 A;  4XLE A;  1KCC A;  1DAB A;  4XQF A;  3BH7 B;  2ODL A;  3SQV A;  1EA0 A;  1OFM A;  1QRB A;  2O0W A;  2VBE A;  1O8J A;  3PET A;  1OFD A;  4XKV A;  1CZF A;  3GQ8 A;  3DU1 X;  5DNS A;  1EZG A;  3GQ9 A;  2NTB A;  1QA1 A;  4YZ0 A;  2EWE A;  2UVF A;  4U4B A;  3B8Y A;  2G0Y A;  1IB4 A;  3GQ7 A;  3N6Z A;  4MXN A;  1TYU A;  2XTX A;  1O8K A;  2VJJ A;  4W8R A;  1BN8 A;  2VBM A;  4YEL A;  4OZY A;  2XT2 A;  2YUH A;  1DBO A;  1OFL A;  3ZSC A;  4XN0 A;  1RMG A;  1QRC A;  1X0C A;  1O88 A;  1CLW A;  2QY1 A;  1IDK A;  2BM6 A;  2V5I A;  3N90 A;  3ML3 A;  3NB2 A;  4OZZ A;  4W8T A;  4XL9 A;  3SYJ A;  1NHC A;  2X6W A;  1BHE A;  3ZPP A;  2BM4 A;  2X6X A;  3GQA A;  1LM1 A;  1TYX A;  2INU A;  4YEJ A;  4XOT A;  4PMH A;  2PEC A;  4YC5 A;  4YZQ A;  4XLC A;  4YZA A;  4OJO A;  1RU4 A;  3B90 A;  1K4Z A;  4YDT A;  4YZX A;  3VMW A;  4EW9 A;  4NK6 A;  1QJV A;  3VSU A;  1H80 A;  1PXZ A;  4XLA A;  4Z06 A;  2BM7 A;  1K8F A;  4Z05 A;  2O1D A; 
#chains in the Genus database with same CATH homology
 2O6W A;  2J8K A;  2QZA A;  4YEI A;  2XT4 A;  3NAW A;  2XTW A;  3NB2 A;  4YFO A;  3SQV A;  2XTY A;  3DU1 X;  4YC5 A;  5DNS A;  4YDT A;  3SY2 A;  3PSS A;  4YCQ A;  2QYU A;  3PSZ A;  2XTX A;  2XT2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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