5EKQC

The structure of the bamacde subcomplex from e. coli
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
188
structure length
179
Chain Sequence
SDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALGARTQFTGDTASLGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSAT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein assembly factor BamA
publication title The structure of the beta-barrel assembly machinery complex.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
total genus 18
structure length 179
sequence length 188
ec nomenclature
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF06804 Lipoprotein_18 NlpB/DapX lipoprotein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.530.50 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 5ekqC01
2LAFA 3TGOC 5EKQC 2YH6A
chains in the Genus database with same CATH superfamily
5E4DA 2L8OA 1KCMA 4A81A 3HK2A 2E3RA 1Z94A 3NJOA 1QMRA 3JRQB 3NS2A 3UIDA 3F73A 2NN5A 4M9WA 3NQNA 2E3NA 3CNWA 2EJXA 5E46A 3DLBA 4QIPA 2E3MA 2LAFA 4BKCA 4R7KA 3TVQA 4DS8A 2VQ5A 3K3KA 3R6PA 5JNNA 1LN1A 2Q3QA 2LUZA 3GTEA 3QSZA 4JHIA 4JHGA 2E3SA 1VJHA 4A8GA 2E3QA 2I9YA 2ZYLA 3H3QA 3KDHA 3NI8A 1BTVA 2L65A 3GL0A 1ICXA 2BK0A 2LE1A 3OH8A 4QCKA 4QDCA 4REIA 2FFSA 3ZVUA 3NMVA 1T17A 1XN6A 3NEGA 1B6FA 4GY9A 3P51A 3GTSA 3IJTA 4A87A 2D4RA 1LLTA 2RESA 2Z9ZA 4Q0KA 4A83A 4A85A 4E6FA 2LCGA 4N76A 2E3PA 1ZXFA 4A84A 2K7HA 4N0GC 4DSBA 4WVOA 4N41A 4NCBA 2PSOA 3KB3A 2LDKA 4Y31A 3Q6AA 2LPXA 4M9BA 3GB4A 4C9CA 2K5GA 2L9PA 3KL1A 4N47A 4BK6A 2M89A 4OICA 2R55A 2PCSA 4JDLA 5AMWA 3TFZA 3PU2A 2YH6A 5E4MA 4A86A 4A8UA 4MA6A 2RERA 2N4AA 3C0VA 4BKDA 1LN3A 1LN2A 1XDFA 3QN1A 2Z9YA 3OQUA 4FPWA 1H2OA 3W9KA 1T27A 5I9JA 1XUVA 2KTEA 3H3RA 4A8VA 3UQHA 4PSBA 4REHA 2IL5A 3TVRA 4LG5A 4A80A 2WQLA 3NJ1A 1XN5A 3RT0C 2KEWA 3E85A 4QDDA 3GGNA 2VNEA 2LF2A 1FSKA 4MAPA 1UW5A 3W9RA 3P9VA 3P0LA 3WG8A 3HXMA 3GKEA 3RD6A 1X53A 3H3TA 3KAYA 4IGVA 2GKDA 1E09A 2N4BA 3FO5A 3GOBA 3Q64A 3Q63A 3NEFA 4N3EA 4JHYA 3RT2A 3H3SA 4QDFB 2M47A 1TXCA 3NJ0A 1XFSA 3OTLA 2QIMA 4IH2A 3HVRA 4LGBA 4IGWA 3DLHA 1EM2A 3ELIA 4REJA 2LEQA 5E4BA 1TW0A 4KPYA 3KLXA 3HO1A 3NMTA 3TGOC 2E3OA 1JSSA 4LGAA 5JO1A 3HM9A 3NMPA 2REZA 2KF2A 4BK7A 3F08A 4DSCA 3KB0A 4RYVA 2NS9A 1FM4A 4A88A 4IGYA 4XRWA 2LGHA 4B9RA 2LAKA 3OJIA 4IH0A 3UJLA 4C9IA 5C9YA 5I8FA 4JHHA 2KCZA 3IE5A 3JRSA 1IFVA 3K90A 3NR4A 4IHRA 3KDIA 3PUTA 4MNSA 3TL1A 3KAZA 4Z3LA 5JO2A 1BV1A 5BRLA 4IGXA 4C94A 2QPVA 2LIOA 4NCAA 2A1LA 2FLHA 4QDFA 4XRTA 3KDJA 4BTZA 2MOUA 3HJFA 5EKQC 3GL2A 4LA7A 3NMNA 4JDAA 3NMHA
chains in the Genus database with same CATH topology
5E4DA 2L8OA 1KCMA 4A81A 3HK2A 2E3RA 1Z94A 3NJOA 1QMRA 3JRQB 3NS2A 3UIDA 3F73A 2NN5A 4M9WA 3NQNA 2E3NA 3CNWA 2EJXA 5E46A 3DLBA 4QIPA 2E3MA 2LAFA 4BKCA 4R7KA 3TVQA 4DS8A 2VQ5A 3K3KA 3R6PA 5JNNA 1LN1A 2Q3QA 2LUZA 3GTEA 3QSZA 4JHIA 4JHGA 2E3SA 1VJHA 4A8GA 2E3QA 2I9YA 2ZYLA 3H3QA 3KDHA 3NI8A 1BTVA 2L65A 3GL0A 1ICXA 2BK0A 2LE1A 3OH8A 4QCKA 4QDCA 4REIA 2FFSA 3ZVUA 3NMVA 1T17A 1XN6A 3NEGA 1B6FA 4GY9A 3P51A 3GTSA 3IJTA 4A87A 2D4RA 1LLTA 2RESA 2Z9ZA 4Q0KA 4A83A 4A85A 4E6FA 2LCGA 4N76A 2E3PA 1ZXFA 4A84A 2K7HA 4N0GC 4DSBA 4WVOA 4N41A 4NCBA 2PSOA 3KB3A 2LDKA 4Y31A 3Q6AA 2LPXA 4M9BA 3GB4A 4C9CA 2K5GA 2L9PA 3KL1A 4N47A 4BK6A 2M89A 4OICA 2R55A 2PCSA 4JDLA 5AMWA 3TFZA 3PU2A 2YH6A 5E4MA 4A86A 4A8UA 4MA6A 2RERA 2N4AA 3C0VA 4BKDA 1LN3A 1LN2A 1XDFA 3QN1A 2Z9YA 3OQUA 4FPWA 1H2OA 3W9KA 1T27A 5I9JA 1XUVA 2KTEA 3H3RA 4A8VA 3UQHA 4PSBA 4REHA 2IL5A 3TVRA 4LG5A 4A80A 2WQLA 3NJ1A 1XN5A 3RT0C 2KEWA 3E85A 4QDDA 3GGNA 2VNEA 2LF2A 1FSKA 4MAPA 1UW5A 3W9RA 3P9VA 3P0LA 3WG8A 3HXMA 3GKEA 3RD6A 1X53A 3H3TA 3KAYA 4IGVA 2GKDA 1E09A 2N4BA 3FO5A 3GOBA 3Q64A 3Q63A 3NEFA 4N3EA 4JHYA 3RT2A 3H3SA 4QDFB 2M47A 1TXCA 3NJ0A 1XFSA 3OTLA 2QIMA 4IH2A 3HVRA 4LGBA 4IGWA 3DLHA 1EM2A 3ELIA 4REJA 2LEQA 5E4BA 1TW0A 4KPYA 3KLXA 3HO1A 3NMTA 3TGOC 2E3OA 1JSSA 4LGAA 5JO1A 3HM9A 3NMPA 2REZA 2KF2A 4BK7A 3F08A 4DSCA 3KB0A 4RYVA 2NS9A 1FM4A 4A88A 4IGYA 4XRWA 2LGHA 4B9RA 2LAKA 3OJIA 4IH0A 3UJLA 4C9IA 5C9YA 5I8FA 4JHHA 2KCZA 3IE5A 3JRSA 1IFVA 3K90A 3NR4A 4IHRA 3KDIA 3PUTA 4MNSA 3TL1A 3KAZA 4Z3LA 5JO2A 1BV1A 5BRLA 4IGXA 4C94A 2QPVA 2LIOA 4NCAA 2A1LA 2FLHA 4QDFA 4XRTA 3KDJA 4BTZA 2MOUA 3HJFA 5EKQC 3GL2A 4LA7A 3NMNA 4JDAA 3NMHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LAF A;  3TGO C;  5EKQ C;  2YH6 A; 
#chains in the Genus database with same CATH topology
 5E4D A;  2L8O A;  1KCM A;  4A81 A;  3HK2 A;  2E3R A;  1Z94 A;  3NJO A;  1QMR A;  3JRQ B;  3NS2 A;  3UID A;  3F73 A;  2NN5 A;  4M9W A;  3NQN A;  2E3N A;  3CNW A;  2EJX A;  5E46 A;  3DLB A;  4QIP A;  2E3M A;  2LAF A;  4BKC A;  4R7K A;  3TVQ A;  4DS8 A;  2VQ5 A;  3K3K A;  3R6P A;  5JNN A;  1LN1 A;  2Q3Q A;  2LUZ A;  3GTE A;  3QSZ A;  4JHI A;  4JHG A;  2E3S A;  1VJH A;  4A8G A;  2E3Q A;  2I9Y A;  2ZYL A;  3H3Q A;  3KDH A;  3NI8 A;  1BTV A;  2L65 A;  3GL0 A;  1ICX A;  2BK0 A;  2LE1 A;  3OH8 A;  4QCK A;  4QDC A;  4REI A;  2FFS A;  3ZVU A;  3NMV A;  1T17 A;  1XN6 A;  3NEG A;  1B6F A;  4GY9 A;  3P51 A;  3GTS A;  3IJT A;  4A87 A;  2D4R A;  1LLT A;  2RES A;  2Z9Z A;  4Q0K A;  4A83 A;  4A85 A;  4E6F A;  2LCG A;  4N76 A;  2E3P A;  1ZXF A;  4A84 A;  2K7H A;  4N0G C;  4DSB A;  4WVO A;  4N41 A;  4NCB A;  2PSO A;  3KB3 A;  2LDK A;  4Y31 A;  3Q6A A;  2LPX A;  4M9B A;  3GB4 A;  4C9C A;  2K5G A;  2L9P A;  3KL1 A;  4N47 A;  4BK6 A;  2M89 A;  4OIC A;  2R55 A;  2PCS A;  4JDL A;  5AMW A;  3TFZ A;  3PU2 A;  2YH6 A;  5E4M A;  4A86 A;  4A8U A;  4MA6 A;  2RER A;  2N4A A;  3C0V A;  4BKD A;  1LN3 A;  1LN2 A;  1XDF A;  3QN1 A;  2Z9Y A;  3OQU A;  4FPW A;  1H2O A;  3W9K A;  1T27 A;  5I9J A;  1XUV A;  2KTE A;  3H3R A;  4A8V A;  3UQH A;  4PSB A;  4REH A;  2IL5 A;  3TVR A;  4LG5 A;  4A80 A;  2WQL A;  3NJ1 A;  1XN5 A;  3RT0 C;  2KEW A;  3E85 A;  4QDD A;  3GGN A;  2VNE A;  2LF2 A;  1FSK A;  4MAP A;  1UW5 A;  3W9R A;  3P9V A;  3P0L A;  3WG8 A;  3HXM A;  3GKE A;  3RD6 A;  1X53 A;  3H3T A;  3KAY A;  4IGV A;  2GKD A;  1E09 A;  2N4B A;  3FO5 A;  3GOB A;  3Q64 A;  3Q63 A;  3NEF A;  4N3E A;  4JHY A;  3RT2 A;  3H3S A;  4QDF B;  2M47 A;  1TXC A;  3NJ0 A;  1XFS A;  3OTL A;  2QIM A;  4IH2 A;  3HVR A;  4LGB A;  4IGW A;  3DLH A;  1EM2 A;  3ELI A;  4REJ A;  2LEQ A;  5E4B A;  1TW0 A;  4KPY A;  3KLX A;  3HO1 A;  3NMT A;  3TGO C;  2E3O A;  1JSS A;  4LGA A;  5JO1 A;  3HM9 A;  3NMP A;  2REZ A;  2KF2 A;  4BK7 A;  3F08 A;  4DSC A;  3KB0 A;  4RYV A;  2NS9 A;  1FM4 A;  4A88 A;  4IGY A;  4XRW A;  2LGH A;  4B9R A;  2LAK A;  3OJI A;  4IH0 A;  3UJL A;  4C9I A;  5C9Y A;  5I8F A;  4JHH A;  2KCZ A;  3IE5 A;  3JRS A;  1IFV A;  3K90 A;  3NR4 A;  4IHR A;  3KDI A;  3PUT A;  4MNS A;  3TL1 A;  3KAZ A;  4Z3L A;  5JO2 A;  1BV1 A;  5BRL A;  4IGX A;  4C94 A;  2QPV A;  2LIO A;  4NCA A;  2A1L A;  2FLH A;  4QDF A;  4XRT A;  3KDJ A;  4BTZ A;  2MOU A;  3HJF A;  5EKQ C;  3GL2 A;  4LA7 A;  3NMN A;  4JDA A;  3NMH A; 
#chains in the Genus database with same CATH homology
 5E4D A;  2L8O A;  1KCM A;  4A81 A;  3HK2 A;  2E3R A;  1Z94 A;  3NJO A;  1QMR A;  3JRQ B;  3NS2 A;  3UID A;  3F73 A;  2NN5 A;  4M9W A;  3NQN A;  2E3N A;  3CNW A;  2EJX A;  5E46 A;  3DLB A;  4QIP A;  2E3M A;  2LAF A;  4BKC A;  4R7K A;  3TVQ A;  4DS8 A;  2VQ5 A;  3K3K A;  3R6P A;  5JNN A;  1LN1 A;  2Q3Q A;  2LUZ A;  3GTE A;  3QSZ A;  4JHI A;  4JHG A;  2E3S A;  1VJH A;  4A8G A;  2E3Q A;  2I9Y A;  2ZYL A;  3H3Q A;  3KDH A;  3NI8 A;  1BTV A;  2L65 A;  3GL0 A;  1ICX A;  2BK0 A;  2LE1 A;  3OH8 A;  4QCK A;  4QDC A;  4REI A;  2FFS A;  3ZVU A;  3NMV A;  1T17 A;  1XN6 A;  3NEG A;  1B6F A;  4GY9 A;  3P51 A;  3GTS A;  3IJT A;  4A87 A;  2D4R A;  1LLT A;  2RES A;  2Z9Z A;  4Q0K A;  4A83 A;  4A85 A;  4E6F A;  2LCG A;  4N76 A;  2E3P A;  1ZXF A;  4A84 A;  2K7H A;  4N0G C;  4DSB A;  4WVO A;  4N41 A;  4NCB A;  2PSO A;  3KB3 A;  2LDK A;  4Y31 A;  3Q6A A;  2LPX A;  4M9B A;  3GB4 A;  4C9C A;  2K5G A;  2L9P A;  3KL1 A;  4N47 A;  4BK6 A;  2M89 A;  4OIC A;  2R55 A;  2PCS A;  4JDL A;  5AMW A;  3TFZ A;  3PU2 A;  2YH6 A;  5E4M A;  4A86 A;  4A8U A;  4MA6 A;  2RER A;  2N4A A;  3C0V A;  4BKD A;  1LN3 A;  1LN2 A;  1XDF A;  3QN1 A;  2Z9Y A;  3OQU A;  4FPW A;  1H2O A;  3W9K A;  1T27 A;  5I9J A;  1XUV A;  2KTE A;  3H3R A;  4A8V A;  3UQH A;  4PSB A;  4REH A;  2IL5 A;  3TVR A;  4LG5 A;  4A80 A;  2WQL A;  3NJ1 A;  1XN5 A;  3RT0 C;  2KEW A;  3E85 A;  4QDD A;  3GGN A;  2VNE A;  2LF2 A;  1FSK A;  4MAP A;  1UW5 A;  3W9R A;  3P9V A;  3P0L A;  3WG8 A;  3HXM A;  3GKE A;  3RD6 A;  1X53 A;  3H3T A;  3KAY A;  4IGV A;  2GKD A;  1E09 A;  2N4B A;  3FO5 A;  3GOB A;  3Q64 A;  3Q63 A;  3NEF A;  4N3E A;  4JHY A;  3RT2 A;  3H3S A;  4QDF B;  2M47 A;  1TXC A;  3NJ0 A;  1XFS A;  3OTL A;  2QIM A;  4IH2 A;  3HVR A;  4LGB A;  4IGW A;  3DLH A;  1EM2 A;  3ELI A;  4REJ A;  2LEQ A;  5E4B A;  1TW0 A;  4KPY A;  3KLX A;  3HO1 A;  3NMT A;  3TGO C;  2E3O A;  1JSS A;  4LGA A;  5JO1 A;  3HM9 A;  3NMP A;  2REZ A;  2KF2 A;  4BK7 A;  3F08 A;  4DSC A;  3KB0 A;  4RYV A;  2NS9 A;  1FM4 A;  4A88 A;  4IGY A;  4XRW A;  2LGH A;  4B9R A;  2LAK A;  3OJI A;  4IH0 A;  3UJL A;  4C9I A;  5C9Y A;  5I8F A;  4JHH A;  2KCZ A;  3IE5 A;  3JRS A;  1IFV A;  3K90 A;  3NR4 A;  4IHR A;  3KDI A;  3PUT A;  4MNS A;  3TL1 A;  3KAZ A;  4Z3L A;  5JO2 A;  1BV1 A;  5BRL A;  4IGX A;  4C94 A;  2QPV A;  2LIO A;  4NCA A;  2A1L A;  2FLH A;  4QDF A;  4XRT A;  3KDJ A;  4BTZ A;  2MOU A;  3HJF A;  5EKQ C;  3GL2 A;  4LA7 A;  3NMN A;  4JDA A;  3NMH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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