5FCFA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris, phosphate and mn bound
Total Genus 136
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
pubmed doi rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
total genus 136
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5fcfA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5fcfA02
2Q94A 1C27A 3L24A 3PKCA 2Q8KA 3MX6A 1CHMA 3PKEA 2BWUA 2BWYA 4U1BA 2B3LA 4U6EA 1R58A 4S00A 1B59A 3IU7A 5FCHA 1QXYA 4EGEA 1WL9A 3PKAA 1YW7A 5JHUA 3PKDA 2HOWA 5D6EA 5JI6A 2BWVA 4R60A 2EA2A 4FLIA 3CTZA 4FLKA 1YVMA 3PN9A 1KQ9A 2Q93A 4PNCA 1KQ0A 4HXXA 2BHDA 2GG8A 4IKUA 3O5VA 2ZSGA 2GZ5A 2GG5A 3RORA 4U70A 4ZWOA 2BHBA 1O0XA 1C23A 1M35A 2V6CA 1QXZA 5CLSA 2EVOA 2B3KA 1Y1NA 2EVMA 3S6BA 2GG9A 3D27A 4IECA 4FKCA 2Q95A 3MR1A 3BITA 3PKBA 2GU5A 1XNZA 5E2CA 1N51A 3OVKA 1YJ3A 1C21A 3IL0A 2V3YA 2GU6A 1BN5A 3TAVA 4U75A 5JFRA 4KM3A 4IKTA 2P98A 3FM3A 2Q92A 4IKRA 3CB5A 4A6VA 2G6PA 2GGBA 1JAWA 1WN1A 3I7MA 1R5HA 2GA2A 4FO7A 4U69A 3FMRA 4S2RP 4S2TP 5CDEA 4IKSA 3MATA 2P99A 4ZWUA 4QR8A 1XGOA 5CE6A 2BHAA 4JUQA 2GG7A 3IU8A 4OOKA 3IG4A 4FLJA 3OOOA 4A6WA 1W7VA 3Q6DA 3RVAA 3L7GA 4PV4A 3CB6A 3FMQA 3IU9A 1YW8A 1C22A 2GU7A 3QOCA 2ADUA 1XGMA 1YW9A 1BOAA 2B3HA 2BHCA 2P9AA 4ZNGA 2BN7A 5CDVA 1QXWA 2GGCA 4MATA 2V3ZA 4B28A 4RGZ1 1MATA 2BB7A 4IPAA 1WL6A 1WY2A 1B6AA 2OKNA 3BIQA 4IF7A 4FO8A 4U6JA 4RZZA 1WLRA 4U6CA 2EA4A 1W2MA 2NQ7A 5CIKA 4FLLA 4U73A 4U6ZA 2GG2A 1XGSA 2DFIA 5E5BA 1WBQA 5D6FA 2BWSA 2GG3A 1WKMA 3PEBA 1C24A 2Q96A 1KP0A 1R5GA 2GG0A 2BH3A 4S01A 4Z7MA 2BWTA 2IW2A 4FUKA 1PV9A 2BWXA 1XGNA 2GTXA 2MATA 5CNXA 2NQ6A 2GU4A 3BIPA 4IDYA 1A16A 3TB5A 4U76A 5FCFA 5CDLA 2EVCA 4ZWPA 4IU6A 4U6WA 1QZYA 4RZYA 2V3XA 2OAZA 2BWWA 4U71A
chains in the Genus database with same CATH superfamily
2Q94A 1C27A 3L24A 3PKCA 2Q8KA 3MX6A 1CHMA 3PKEA 2BWUA 2BWYA 4U1BA 2B3LA 4U6EA 1R58A 4S00A 1B59A 3IU7A 5FCHA 1QXYA 4EGEA 1WL9A 3PKAA 1YW7A 5JHUA 3PKDA 2HOWA 5D6EA 5JI6A 2BWVA 4R60A 2EA2A 4FLIA 3CTZA 4FLKA 1YVMA 3PN9A 1KQ9A 2Q93A 4PNCA 1KQ0A 4HXXA 2BHDA 2GG8A 4IKUA 3O5VA 2ZSGA 2GZ5A 2GG5A 3RORA 4U70A 4ZWOA 2BHBA 1O0XA 1C23A 1M35A 2V6CA 1QXZA 5CLSA 2EVOA 2B3KA 1Y1NA 2EVMA 3S6BA 2GG9A 3D27A 4IECA 4FKCA 2Q95A 3MR1A 3BITA 3PKBA 2GU5A 1XNZA 5E2CA 1N51A 3OVKA 1YJ3A 1C21A 3IL0A 2V3YA 2GU6A 1BN5A 3TAVA 4U75A 5JFRA 4KM3A 4IKTA 2P98A 3FM3A 2Q92A 4IKRA 3CB5A 4A6VA 2G6PA 2GGBA 1JAWA 1WN1A 3I7MA 1R5HA 2GA2A 4FO7A 4U69A 3FMRA 4S2RP 4S2TP 5CDEA 4IKSA 3MATA 2P99A 4ZWUA 4QR8A 1XGOA 5CE6A 2BHAA 4JUQA 2GG7A 3IU8A 4OOKA 3IG4A 4FLJA 3OOOA 4A6WA 1W7VA 3Q6DA 3RVAA 3L7GA 4PV4A 3CB6A 3FMQA 3IU9A 1YW8A 1C22A 2GU7A 3QOCA 2ADUA 1XGMA 1YW9A 1BOAA 2B3HA 2BHCA 2P9AA 4ZNGA 2BN7A 5CDVA 1QXWA 2GGCA 4MATA 2V3ZA 4B28A 4RGZ1 1MATA 2BB7A 4IPAA 1WL6A 1WY2A 1B6AA 2OKNA 3BIQA 4IF7A 4FO8A 4U6JA 4RZZA 1WLRA 4U6CA 2EA4A 1W2MA 2NQ7A 5CIKA 4FLLA 4U73A 4U6ZA 2GG2A 1XGSA 2DFIA 5E5BA 1WBQA 5D6FA 2BWSA 2GG3A 1WKMA 3PEBA 1C24A 2Q96A 1KP0A 1R5GA 2GG0A 2BH3A 4S01A 4Z7MA 2BWTA 2IW2A 4FUKA 1PV9A 2BWXA 1XGNA 2GTXA 2MATA 5CNXA 2NQ6A 2GU4A 3BIPA 4IDYA 1A16A 3TB5A 4U76A 5FCFA 5CDLA 2EVCA 4ZWPA 4IU6A 4U6WA 1QZYA 4RZYA 2V3XA 2OAZA 2BWWA 4U71A
chains in the Genus database with same CATH topology
2Q94A 1C27A 3L24A 3PKCA 2Q8KA 3MX6A 1CHMA 3PKEA 2BWUA 2BWYA 4U1BA 2B3LA 4U6EA 1R58A 4S00A 1B59A 3IU7A 5FCHA 1QXYA 4EGEA 1WL9A 3PKAA 1YW7A 5JHUA 3PKDA 2HOWA 5D6EA 5JI6A 2BWVA 4R60A 2EA2A 4FLIA 3CTZA 4FLKA 1YVMA 3PN9A 1KQ9A 2Q93A 4PNCA 1KQ0A 4HXXA 2BHDA 2GG8A 4IKUA 3O5VA 2ZSGA 2GZ5A 2GG5A 3RORA 4U70A 4ZWOA 2BHBA 1O0XA 1C23A 1M35A 2V6CA 1QXZA 5CLSA 2EVOA 2B3KA 1Y1NA 2EVMA 3S6BA 2GG9A 3D27A 4IECA 4FKCA 2Q95A 3MR1A 3BITA 3PKBA 2GU5A 1XNZA 5E2CA 1N51A 3OVKA 1YJ3A 1C21A 3IL0A 2V3YA 2GU6A 1BN5A 3TAVA 4U75A 5JFRA 4KM3A 4IKTA 2P98A 3FM3A 2Q92A 4IKRA 3CB5A 4A6VA 2G6PA 2GGBA 1JAWA 1WN1A 3I7MA 1R5HA 2GA2A 4FO7A 4U69A 3FMRA 4S2RP 4S2TP 5CDEA 4IKSA 3MATA 2P99A 4ZWUA 4QR8A 1XGOA 5CE6A 2BHAA 4JUQA 2GG7A 3IU8A 4OOKA 3IG4A 4FLJA 3OOOA 4A6WA 1W7VA 3Q6DA 3RVAA 3L7GA 4PV4A 3CB6A 3FMQA 3IU9A 1YW8A 1C22A 2GU7A 3QOCA 2ADUA 1XGMA 1YW9A 1BOAA 2B3HA 2BHCA 2P9AA 4ZNGA 2BN7A 5CDVA 1QXWA 2GGCA 4MATA 2V3ZA 4B28A 4RGZ1 1MATA 2BB7A 4IPAA 1WL6A 1WY2A 1B6AA 2OKNA 3BIQA 4IF7A 4FO8A 4U6JA 4RZZA 1WLRA 4U6CA 2EA4A 1W2MA 2NQ7A 5CIKA 4FLLA 4U73A 4U6ZA 2GG2A 1XGSA 2DFIA 5E5BA 1WBQA 5D6FA 2BWSA 2GG3A 1WKMA 3PEBA 1C24A 2Q96A 1KP0A 1R5GA 2GG0A 2BH3A 4S01A 4Z7MA 2BWTA 2IW2A 4FUKA 1PV9A 2BWXA 1XGNA 2GTXA 2MATA 5CNXA 2NQ6A 2GU4A 3BIPA 4IDYA 1A16A 3TB5A 4U76A 5FCFA 5CDLA 2EVCA 4ZWPA 4IU6A 4U6WA 1QZYA 4RZYA 2V3XA 2OAZA 2BWWA 4U71A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q94 A;  1C27 A;  3L24 A;  3PKC A;  2Q8K A;  3MX6 A;  1CHM A;  3PKE A;  2BWU A;  2BWY A;  4U1B A;  2B3L A;  4U6E A;  1R58 A;  4S00 A;  1B59 A;  3IU7 A;  5FCH A;  1QXY A;  4EGE A;  1WL9 A;  3PKA A;  1YW7 A;  5JHU A;  3PKD A;  2HOW A;  5D6E A;  5JI6 A;  2BWV A;  4R60 A;  2EA2 A;  4FLI A;  3CTZ A;  4FLK A;  1YVM A;  3PN9 A;  1KQ9 A;  2Q93 A;  4PNC A;  1KQ0 A;  4HXX A;  2BHD A;  2GG8 A;  4IKU A;  3O5V A;  2ZSG A;  2GZ5 A;  2GG5 A;  3ROR A;  4U70 A;  4ZWO A;  2BHB A;  1O0X A;  1C23 A;  1M35 A;  2V6C A;  1QXZ A;  5CLS A;  2EVO A;  2B3K A;  1Y1N A;  2EVM A;  3S6B A;  2GG9 A;  3D27 A;  4IEC A;  4FKC A;  2Q95 A;  3MR1 A;  3BIT A;  3PKB A;  2GU5 A;  1XNZ A;  5E2C A;  1N51 A;  3OVK A;  1YJ3 A;  1C21 A;  3IL0 A;  2V3Y A;  2GU6 A;  1BN5 A;  3TAV A;  4U75 A;  5JFR A;  4KM3 A;  4IKT A;  2P98 A;  3FM3 A;  2Q92 A;  4IKR A;  3CB5 A;  4A6V A;  2G6P A;  2GGB A;  1JAW A;  1WN1 A;  3I7M A;  1R5H A;  2GA2 A;  4FO7 A;  4U69 A;  3FMR A;  4S2R P;  4S2T P;  5CDE A;  4IKS A;  3MAT A;  2P99 A;  4ZWU A;  4QR8 A;  1XGO A;  5CE6 A;  2BHA A;  4JUQ A;  2GG7 A;  3IU8 A;  4OOK A;  3IG4 A;  4FLJ A;  3OOO A;  4A6W A;  1W7V A;  3Q6D A;  3RVA A;  3L7G A;  4PV4 A;  3CB6 A;  3FMQ A;  3IU9 A;  1YW8 A;  1C22 A;  2GU7 A;  3QOC A;  2ADU A;  1XGM A;  1YW9 A;  1BOA A;  2B3H A;  2BHC A;  2P9A A;  4ZNG A;  2BN7 A;  5CDV A;  1QXW A;  2GGC A;  4MAT A;  2V3Z A;  4B28 A;  4RGZ 1;  1MAT A;  2BB7 A;  4IPA A;  1WL6 A;  1WY2 A;  1B6A A;  2OKN A;  3BIQ A;  4IF7 A;  4FO8 A;  4U6J A;  4RZZ A;  1WLR A;  4U6C A;  2EA4 A;  1W2M A;  2NQ7 A;  5CIK A;  4FLL A;  4U73 A;  4U6Z A;  2GG2 A;  1XGS A;  2DFI A;  5E5B A;  1WBQ A;  5D6F A;  2BWS A;  2GG3 A;  1WKM A;  3PEB A;  1C24 A;  2Q96 A;  1KP0 A;  1R5G A;  2GG0 A;  2BH3 A;  4S01 A;  4Z7M A;  2BWT A;  2IW2 A;  4FUK A;  1PV9 A;  2BWX A;  1XGN A;  2GTX A;  2MAT A;  5CNX A;  2NQ6 A;  2GU4 A;  3BIP A;  4IDY A;  1A16 A;  3TB5 A;  4U76 A;  5FCF A;  5CDL A;  2EVC A;  4ZWP A;  4IU6 A;  4U6W A;  1QZY A;  4RZY A;  2V3X A;  2OAZ A;  2BWW A;  4U71 A; 
#chains in the Genus database with same CATH topology
 2Q94 A;  1C27 A;  3L24 A;  3PKC A;  2Q8K A;  3MX6 A;  1CHM A;  3PKE A;  2BWU A;  2BWY A;  4U1B A;  2B3L A;  4U6E A;  1R58 A;  4S00 A;  1B59 A;  3IU7 A;  5FCH A;  1QXY A;  4EGE A;  1WL9 A;  3PKA A;  1YW7 A;  5JHU A;  3PKD A;  2HOW A;  5D6E A;  5JI6 A;  2BWV A;  4R60 A;  2EA2 A;  4FLI A;  3CTZ A;  4FLK A;  1YVM A;  3PN9 A;  1KQ9 A;  2Q93 A;  4PNC A;  1KQ0 A;  4HXX A;  2BHD A;  2GG8 A;  4IKU A;  3O5V A;  2ZSG A;  2GZ5 A;  2GG5 A;  3ROR A;  4U70 A;  4ZWO A;  2BHB A;  1O0X A;  1C23 A;  1M35 A;  2V6C A;  1QXZ A;  5CLS A;  2EVO A;  2B3K A;  1Y1N A;  2EVM A;  3S6B A;  2GG9 A;  3D27 A;  4IEC A;  4FKC A;  2Q95 A;  3MR1 A;  3BIT A;  3PKB A;  2GU5 A;  1XNZ A;  5E2C A;  1N51 A;  3OVK A;  1YJ3 A;  1C21 A;  3IL0 A;  2V3Y A;  2GU6 A;  1BN5 A;  3TAV A;  4U75 A;  5JFR A;  4KM3 A;  4IKT A;  2P98 A;  3FM3 A;  2Q92 A;  4IKR A;  3CB5 A;  4A6V A;  2G6P A;  2GGB A;  1JAW A;  1WN1 A;  3I7M A;  1R5H A;  2GA2 A;  4FO7 A;  4U69 A;  3FMR A;  4S2R P;  4S2T P;  5CDE A;  4IKS A;  3MAT A;  2P99 A;  4ZWU A;  4QR8 A;  1XGO A;  5CE6 A;  2BHA A;  4JUQ A;  2GG7 A;  3IU8 A;  4OOK A;  3IG4 A;  4FLJ A;  3OOO A;  4A6W A;  1W7V A;  3Q6D A;  3RVA A;  3L7G A;  4PV4 A;  3CB6 A;  3FMQ A;  3IU9 A;  1YW8 A;  1C22 A;  2GU7 A;  3QOC A;  2ADU A;  1XGM A;  1YW9 A;  1BOA A;  2B3H A;  2BHC A;  2P9A A;  4ZNG A;  2BN7 A;  5CDV A;  1QXW A;  2GGC A;  4MAT A;  2V3Z A;  4B28 A;  4RGZ 1;  1MAT A;  2BB7 A;  4IPA A;  1WL6 A;  1WY2 A;  1B6A A;  2OKN A;  3BIQ A;  4IF7 A;  4FO8 A;  4U6J A;  4RZZ A;  1WLR A;  4U6C A;  2EA4 A;  1W2M A;  2NQ7 A;  5CIK A;  4FLL A;  4U73 A;  4U6Z A;  2GG2 A;  1XGS A;  2DFI A;  5E5B A;  1WBQ A;  5D6F A;  2BWS A;  2GG3 A;  1WKM A;  3PEB A;  1C24 A;  2Q96 A;  1KP0 A;  1R5G A;  2GG0 A;  2BH3 A;  4S01 A;  4Z7M A;  2BWT A;  2IW2 A;  4FUK A;  1PV9 A;  2BWX A;  1XGN A;  2GTX A;  2MAT A;  5CNX A;  2NQ6 A;  2GU4 A;  3BIP A;  4IDY A;  1A16 A;  3TB5 A;  4U76 A;  5FCF A;  5CDL A;  2EVC A;  4ZWP A;  4IU6 A;  4U6W A;  1QZY A;  4RZY A;  2V3X A;  2OAZ A;  2BWW A;  4U71 A; 
#chains in the Genus database with same CATH homology
 2Q94 A;  1C27 A;  3L24 A;  3PKC A;  2Q8K A;  3MX6 A;  1CHM A;  3PKE A;  2BWU A;  2BWY A;  4U1B A;  2B3L A;  4U6E A;  1R58 A;  4S00 A;  1B59 A;  3IU7 A;  5FCH A;  1QXY A;  4EGE A;  1WL9 A;  3PKA A;  1YW7 A;  5JHU A;  3PKD A;  2HOW A;  5D6E A;  5JI6 A;  2BWV A;  4R60 A;  2EA2 A;  4FLI A;  3CTZ A;  4FLK A;  1YVM A;  3PN9 A;  1KQ9 A;  2Q93 A;  4PNC A;  1KQ0 A;  4HXX A;  2BHD A;  2GG8 A;  4IKU A;  3O5V A;  2ZSG A;  2GZ5 A;  2GG5 A;  3ROR A;  4U70 A;  4ZWO A;  2BHB A;  1O0X A;  1C23 A;  1M35 A;  2V6C A;  1QXZ A;  5CLS A;  2EVO A;  2B3K A;  1Y1N A;  2EVM A;  3S6B A;  2GG9 A;  3D27 A;  4IEC A;  4FKC A;  2Q95 A;  3MR1 A;  3BIT A;  3PKB A;  2GU5 A;  1XNZ A;  5E2C A;  1N51 A;  3OVK A;  1YJ3 A;  1C21 A;  3IL0 A;  2V3Y A;  2GU6 A;  1BN5 A;  3TAV A;  4U75 A;  5JFR A;  4KM3 A;  4IKT A;  2P98 A;  3FM3 A;  2Q92 A;  4IKR A;  3CB5 A;  4A6V A;  2G6P A;  2GGB A;  1JAW A;  1WN1 A;  3I7M A;  1R5H A;  2GA2 A;  4FO7 A;  4U69 A;  3FMR A;  4S2R P;  4S2T P;  5CDE A;  4IKS A;  3MAT A;  2P99 A;  4ZWU A;  4QR8 A;  1XGO A;  5CE6 A;  2BHA A;  4JUQ A;  2GG7 A;  3IU8 A;  4OOK A;  3IG4 A;  4FLJ A;  3OOO A;  4A6W A;  1W7V A;  3Q6D A;  3RVA A;  3L7G A;  4PV4 A;  3CB6 A;  3FMQ A;  3IU9 A;  1YW8 A;  1C22 A;  2GU7 A;  3QOC A;  2ADU A;  1XGM A;  1YW9 A;  1BOA A;  2B3H A;  2BHC A;  2P9A A;  4ZNG A;  2BN7 A;  5CDV A;  1QXW A;  2GGC A;  4MAT A;  2V3Z A;  4B28 A;  4RGZ 1;  1MAT A;  2BB7 A;  4IPA A;  1WL6 A;  1WY2 A;  1B6A A;  2OKN A;  3BIQ A;  4IF7 A;  4FO8 A;  4U6J A;  4RZZ A;  1WLR A;  4U6C A;  2EA4 A;  1W2M A;  2NQ7 A;  5CIK A;  4FLL A;  4U73 A;  4U6Z A;  2GG2 A;  1XGS A;  2DFI A;  5E5B A;  1WBQ A;  5D6F A;  2BWS A;  2GG3 A;  1WKM A;  3PEB A;  1C24 A;  2Q96 A;  1KP0 A;  1R5G A;  2GG0 A;  2BH3 A;  4S01 A;  4Z7M A;  2BWT A;  2IW2 A;  4FUK A;  1PV9 A;  2BWX A;  1XGN A;  2GTX A;  2MAT A;  5CNX A;  2NQ6 A;  2GU4 A;  3BIP A;  4IDY A;  1A16 A;  3TB5 A;  4U76 A;  5FCF A;  5CDL A;  2EVC A;  4ZWP A;  4IU6 A;  4U6W A;  1QZY A;  4RZY A;  2V3X A;  2OAZ A;  2BWW A;  4U71 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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