5G0XA

Pseudomonas aeruginosa hdah bound to acetate.
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
370
structure length
370
Chain Sequence
TRRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSLLDVSGLTARLQLRSAPPASDEDLLRVHPAHYLERFKALSDAGGGSLGQDAPIGPGSYEIARLSAGLAIAALDAVLAGEADNAYSLSRPPGHHCLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQDGCFPPGYSGAEDIGEDRGRGFNLNVPLLPGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVDPLARMQLHSDSFRAMTAMVRDAAERHAGGRLVVVHEGGYSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQRLEELAAQFGLC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HDAH
publication title Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 142
structure length 370
sequence length 370
chains with identical sequence C
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0xA00
5G12A 5THVA 4RN0A 1T64A 4QA6A 1C3PA 3F07A 4RN1A 1C3SA 3F0RA 3EW8A 3MZ7A 5EFBD 5G11A 5A2SA 5G17A 5G0XA 5LI3A 3SFFA 3RQDA 4BZ8A 5EFJD 5EFKB 5G1AA 5BWZA 4RN2A 5DC6A 5EFGA 3MZ4A 3ZNSA 4ZUQA 4BKXB 3C0ZA 4CBYA 2V5WA 2VCGA 1ZZ3A 4LXZA 3F06A 5THTA 4ZUOA 5EF7A 3EZTA 3MENA 3Q9FA 4CBTA 5D1DA 3Q9BA 5FUEA 4QA5A 5EEFA 1ZZ1A 3C10A 5D1CA 1T67A 3C0YA 5G0YA 5EENA 1T69A 4ZUMA 5G10A 4BZ6A 2VQVA 2GH6A 5FCWA 4ZUPA 3EZPA 4BZ5A 5EF8A 1W22A 2VQWG 1VKGA 5THUA 1ZZ0A 4QA0A 5G0JA 3MZ3A 4CQFA 5G3WA 2VQMA 5DC7A 4QA1A 5EEMA 4LY1A 5G13A 3Q9CA 2VQOA 4ZURA 5G1CA 4A69A 3EWFA 4QA4A 3Q9EA 4ZUNA 3SFHA 2VQQA 1C3RA 5G0HA 2VQJA 2V5XA 5G0GA 4QA2A 3MZ6A 5IWGA 5THSA 5G0IA 5ICNB 5EEIA 5EFHA 5EEKA 5G1BA 5D1BA 5EFNA 4BZ7A 4QA7A 4QA3A 3MAXA 5JI5A 5DC5A 3ZNRA 5IX0A 4BZ9A 5DC8A
chains in the Genus database with same CATH superfamily
4ITYA 3SL1A 5G12A 5THVA 4GSMA 4IXVA 5CEVA 4RN0A 1T64A 4QA6A 1C3PA 3E6KA 5RLAA 3F07A 4RN1A 1C3SA 4I06A 3F0RA 3GMZA 3EW8A 3MZ7A 5EFBD 1P8OA 4HZEA 5G11A 4Q3RC 3SKKA 2EF4A 5G0XA 2EF5A 5G17A 5A2SA 1ZPGA 2EIVA 3LHLA 5LI3A 3SFFA 3F80A 3MJLA 3RQDA 4BZ8A 3DJ8A 3NIOA 5EFJD 4Q3TA 3SL0A 1HQXA 4GWDA 5EFKB 1GQ6A 5G1AA 5BWZA 4Q3QA 4DZ4A 4RN2A 5DC6A 5EFGA 4BZ9A 3MZ4A 3ZNSA 4ZUQA 3E9BA 4BKXB 1P8QA 3C0ZA 4Q3UA 4CBYA 2V5WA 4RHMA 2PHAA 2VCGA 4RHIA 1ZZ3A 5HJAA 4HWWA 4LXZA 3LP7A 2PHOA 3F06A 4IE1A 4ZUOA 1P8NA 5THTA 1HQFA 5EF7A 1XFKA 3RLAA 3EZTA 3MENA 1PQ3A 3Q9FA 4CBTA 5D1DA 3Q9BA 4MYKA 4FCIA 5FUEA 4QA5A 3LP4A 1T5FA 5EEFA 1ZZ1A 3THJA 3C10A 5D1CA 3KV2A 3E8QA 1T67A 3C0YA 4Q3VA 1P8SA 3TH7A 3THHA 3E8ZA 5G0YA 5EENA 1T69A 1TBHA 1HQGA 4ZUMA 5G10A 4BZ6A 2VQVA 2GH6A 5FCWA 4ZUPA 3EZPA 3MFVA 4IU4A 4G3HA 4IU0A 4BZ5A 5EF8A 1W22A 2VQWG 1CEVA 1VKGA 1P8MA 3NIQA 5THUA 1ZZ0A 4QA0A 5G0JA 3MZ3A 1T4SA 3MFWA 1T4RA 4CQFA 1RLAA 2VQMA 5G3WA 1P8RA 5DC7A 4QA1A 1P8PA 3PZLA 5EEMA 4LY1A 3CEVA 5G13A 4IU1A 4MYNA 4Q3SA 3Q9CA 2VQOA 4IU5A 4IXUA 4RHKA 4ZURA 3TF3A 2A0MA 3THEA 1WVBA 4IE3A 4CEVA 4RHQA 5G1CA 4MXRA 3EWFA 4A69A 4HXQA 4QA4A 2CEVA 3MMRA 3Q9EA 4ZUNA 3SFHA 1R1OA 2VQQA 1C3RA 1WOIA 4GSZA 1HQHA 4Q40A 5G0HA 4Q41A 4Q3RA 2AEBA 2VQJA 1ZPEA 2V5XA 1TBLA 1T4PA 3E6VA 5G0GA 3GN0A 4QA2A 2RLAA 1T5GA 3MZ6A 5IWGA 5THSA 4GSVA 5G0IA 3SJTA 5EEIA 5ICNB 4IE2A 1HQ5A 4FCKA 5EFHA 5EEKA 5G1BA 5D1BA 5EFNA 4BZ7A 2PLLA 4QA7A 1WOHA 4QA3A 4RHLA 3M1RA 3MAXA 4MYLA 1TBJA 4RLAA 4GWCA 1T4TA 1WOGA 5JI5A 4Q3PA 2ZAVA 4MYFA 5HJ9A 5DC5A 4RHJA 3ZNRA 1TA1A 5IX0A 3NIPA 4Q42A 1WVAA 5DC8A 1GQ7A 1D3VA
chains in the Genus database with same CATH topology
5G12A 5THVA 4RN0A 1T64A 4QA6A 1C3PA 3F07A 4RN1A 1C3SA 3F0RA 3EW8A 3MZ7A 5EFBD 5G11A 5A2SA 5G17A 5G0XA 5LI3A 3SFFA 3RQDA 4BZ8A 5EFJD 5EFKB 5G1AA 5BWZA 4RN2A 5DC6A 5EFGA 3MZ4A 3ZNSA 4ZUQA 4BKXB 3C0ZA 4CBYA 2V5WA 2VCGA 1ZZ3A 4LXZA 3F06A 5THTA 4ZUOA 5EF7A 3EZTA 3MENA 3Q9FA 4CBTA 5D1DA 3Q9BA 5FUEA 4QA5A 5EEFA 1ZZ1A 3C10A 5D1CA 1T67A 3C0YA 5G0YA 5EENA 1T69A 4ZUMA 5G10A 4BZ6A 2VQVA 2GH6A 5FCWA 4ZUPA 3EZPA 4BZ5A 5EF8A 1W22A 2VQWG 1VKGA 5THUA 1ZZ0A 4QA0A 5G0JA 3MZ3A 4CQFA 5G3WA 2VQMA 5DC7A 4QA1A 5EEMA 4LY1A 5G13A 3Q9CA 2VQOA 4ZURA 5G1CA 4A69A 3EWFA 4QA4A 3Q9EA 4ZUNA 3SFHA 2VQQA 1C3RA 5G0HA 2VQJA 2V5XA 5G0GA 4QA2A 3MZ6A 5IWGA 5THSA 5G0IA 5ICNB 5EEIA 5EFHA 5EEKA 5G1BA 5D1BA 5EFNA 4BZ7A 4QA7A 4QA3A 3MAXA 5JI5A 5DC5A 3ZNRA 5IX0A 4BZ9A 5DC8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5G12 A;  5THV A;  4RN0 A;  1T64 A;  4QA6 A;  1C3P A;  3F07 A;  4RN1 A;  1C3S A;  3F0R A;  3EW8 A;  3MZ7 A;  5EFB D;  5G11 A;  5A2S A;  5G17 A;  5G0X A;  5LI3 A;  3SFF A;  3RQD A;  4BZ8 A;  5EFJ D;  5EFK B;  5G1A A;  5BWZ A;  4RN2 A;  5DC6 A;  5EFG A;  3MZ4 A;  3ZNS A;  4ZUQ A;  4BKX B;  3C0Z A;  4CBY A;  2V5W A;  2VCG A;  1ZZ3 A;  4LXZ A;  3F06 A;  5THT A;  4ZUO A;  5EF7 A;  3EZT A;  3MEN A;  3Q9F A;  4CBT A;  5D1D A;  3Q9B A;  5FUE A;  4QA5 A;  5EEF A;  1ZZ1 A;  3C10 A;  5D1C A;  1T67 A;  3C0Y A;  5G0Y A;  5EEN A;  1T69 A;  4ZUM A;  5G10 A;  4BZ6 A;  2VQV A;  2GH6 A;  5FCW A;  4ZUP A;  3EZP A;  4BZ5 A;  5EF8 A;  1W22 A;  2VQW G;  1VKG A;  5THU A;  1ZZ0 A;  4QA0 A;  5G0J A;  3MZ3 A;  4CQF A;  5G3W A;  2VQM A;  5DC7 A;  4QA1 A;  5EEM A;  4LY1 A;  5G13 A;  3Q9C A;  2VQO A;  4ZUR A;  5G1C A;  4A69 A;  3EWF A;  4QA4 A;  3Q9E A;  4ZUN A;  3SFH A;  2VQQ A;  1C3R A;  5G0H A;  2VQJ A;  2V5X A;  5G0G A;  4QA2 A;  3MZ6 A;  5IWG A;  5THS A;  5G0I A;  5ICN B;  5EEI A;  5EFH A;  5EEK A;  5G1B A;  5D1B A;  5EFN A;  4BZ7 A;  4QA7 A;  4QA3 A;  3MAX A;  5JI5 A;  5DC5 A;  3ZNR A;  5IX0 A;  4BZ9 A;  5DC8 A; 
#chains in the Genus database with same CATH topology
 4ITY A;  3SL1 A;  5G12 A;  5THV A;  4GSM A;  4IXV A;  5CEV A;  4RN0 A;  1T64 A;  4QA6 A;  1C3P A;  3E6K A;  5RLA A;  3F07 A;  4RN1 A;  1C3S A;  4I06 A;  3F0R A;  3GMZ A;  3EW8 A;  3MZ7 A;  5EFB D;  1P8O A;  4HZE A;  5G11 A;  4Q3R C;  3SKK A;  2EF4 A;  5G0X A;  2EF5 A;  5G17 A;  5A2S A;  1ZPG A;  2EIV A;  3LHL A;  5LI3 A;  3SFF A;  3F80 A;  3MJL A;  3RQD A;  4BZ8 A;  3DJ8 A;  3NIO A;  5EFJ D;  4Q3T A;  3SL0 A;  1HQX A;  4GWD A;  5EFK B;  1GQ6 A;  5G1A A;  5BWZ A;  4Q3Q A;  4DZ4 A;  4RN2 A;  5DC6 A;  5EFG A;  4BZ9 A;  3MZ4 A;  3ZNS A;  4ZUQ A;  3E9B A;  4BKX B;  1P8Q A;  3C0Z A;  4Q3U A;  4CBY A;  2V5W A;  4RHM A;  2PHA A;  2VCG A;  4RHI A;  1ZZ3 A;  5HJA A;  4HWW A;  4LXZ A;  3LP7 A;  2PHO A;  3F06 A;  4IE1 A;  4ZUO A;  1P8N A;  5THT A;  1HQF A;  5EF7 A;  1XFK A;  3RLA A;  3EZT A;  3MEN A;  1PQ3 A;  3Q9F A;  4CBT A;  5D1D A;  3Q9B A;  4MYK A;  4FCI A;  5FUE A;  4QA5 A;  3LP4 A;  1T5F A;  5EEF A;  1ZZ1 A;  3THJ A;  3C10 A;  5D1C A;  3KV2 A;  3E8Q A;  1T67 A;  3C0Y A;  4Q3V A;  1P8S A;  3TH7 A;  3THH A;  3E8Z A;  5G0Y A;  5EEN A;  1T69 A;  1TBH A;  1HQG A;  4ZUM A;  5G10 A;  4BZ6 A;  2VQV A;  2GH6 A;  5FCW A;  4ZUP A;  3EZP A;  3MFV A;  4IU4 A;  4G3H A;  4IU0 A;  4BZ5 A;  5EF8 A;  1W22 A;  2VQW G;  1CEV A;  1VKG A;  1P8M A;  3NIQ A;  5THU A;  1ZZ0 A;  4QA0 A;  5G0J A;  3MZ3 A;  1T4S A;  3MFW A;  1T4R A;  4CQF A;  1RLA A;  2VQM A;  5G3W A;  1P8R A;  5DC7 A;  4QA1 A;  1P8P A;  3PZL A;  5EEM A;  4LY1 A;  3CEV A;  5G13 A;  4IU1 A;  4MYN A;  4Q3S A;  3Q9C A;  2VQO A;  4IU5 A;  4IXU A;  4RHK A;  4ZUR A;  3TF3 A;  2A0M A;  3THE A;  1WVB A;  4IE3 A;  4CEV A;  4RHQ A;  5G1C A;  4MXR A;  3EWF A;  4A69 A;  4HXQ A;  4QA4 A;  2CEV A;  3MMR A;  3Q9E A;  4ZUN A;  3SFH A;  1R1O A;  2VQQ A;  1C3R A;  1WOI A;  4GSZ A;  1HQH A;  4Q40 A;  5G0H A;  4Q41 A;  4Q3R A;  2AEB A;  2VQJ A;  1ZPE A;  2V5X A;  1TBL A;  1T4P A;  3E6V A;  5G0G A;  3GN0 A;  4QA2 A;  2RLA A;  1T5G A;  3MZ6 A;  5IWG A;  5THS A;  4GSV A;  5G0I A;  3SJT A;  5EEI A;  5ICN B;  4IE2 A;  1HQ5 A;  4FCK A;  5EFH A;  5EEK A;  5G1B A;  5D1B A;  5EFN A;  4BZ7 A;  2PLL A;  4QA7 A;  1WOH A;  4QA3 A;  4RHL A;  3M1R A;  3MAX A;  4MYL A;  1TBJ A;  4RLA A;  4GWC A;  1T4T A;  1WOG A;  5JI5 A;  4Q3P A;  2ZAV A;  4MYF A;  5HJ9 A;  5DC5 A;  4RHJ A;  3ZNR A;  1TA1 A;  5IX0 A;  3NIP A;  4Q42 A;  1WVA A;  5DC8 A;  1GQ7 A;  1D3V A; 
#chains in the Genus database with same CATH homology
 5G12 A;  5THV A;  4RN0 A;  1T64 A;  4QA6 A;  1C3P A;  3F07 A;  4RN1 A;  1C3S A;  3F0R A;  3EW8 A;  3MZ7 A;  5EFB D;  5G11 A;  5A2S A;  5G17 A;  5G0X A;  5LI3 A;  3SFF A;  3RQD A;  4BZ8 A;  5EFJ D;  5EFK B;  5G1A A;  5BWZ A;  4RN2 A;  5DC6 A;  5EFG A;  3MZ4 A;  3ZNS A;  4ZUQ A;  4BKX B;  3C0Z A;  4CBY A;  2V5W A;  2VCG A;  1ZZ3 A;  4LXZ A;  3F06 A;  5THT A;  4ZUO A;  5EF7 A;  3EZT A;  3MEN A;  3Q9F A;  4CBT A;  5D1D A;  3Q9B A;  5FUE A;  4QA5 A;  5EEF A;  1ZZ1 A;  3C10 A;  5D1C A;  1T67 A;  3C0Y A;  5G0Y A;  5EEN A;  1T69 A;  4ZUM A;  5G10 A;  4BZ6 A;  2VQV A;  2GH6 A;  5FCW A;  4ZUP A;  3EZP A;  4BZ5 A;  5EF8 A;  1W22 A;  2VQW G;  1VKG A;  5THU A;  1ZZ0 A;  4QA0 A;  5G0J A;  3MZ3 A;  4CQF A;  5G3W A;  2VQM A;  5DC7 A;  4QA1 A;  5EEM A;  4LY1 A;  5G13 A;  3Q9C A;  2VQO A;  4ZUR A;  5G1C A;  4A69 A;  3EWF A;  4QA4 A;  3Q9E A;  4ZUN A;  3SFH A;  2VQQ A;  1C3R A;  5G0H A;  2VQJ A;  2V5X A;  5G0G A;  4QA2 A;  3MZ6 A;  5IWG A;  5THS A;  5G0I A;  5ICN B;  5EEI A;  5EFH A;  5EEK A;  5G1B A;  5D1B A;  5EFN A;  4BZ7 A;  4QA7 A;  4QA3 A;  3MAX A;  5JI5 A;  5DC5 A;  3ZNR A;  5IX0 A;  4BZ9 A;  5DC8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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