5G11A

Pseudomonas aeruginosa hdah bound to pfsaha.
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
369
structure length
369
Chain Sequence
RRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSLLDVSGLTARLQLRSAPPASDEDLLRVHPAHYLERFKALSDAGGGSLGQDAPIGPGSYEIARLSAGLAIAALDAVLAGEADNAYSLSRPPGHHCLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQDGCFPPGYSGAEDIGEDRGRGFNLNVPLLPGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVDPLARMQLHSDSFRAMTAMVRDAAERHAGGRLVVVHEGGFSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQRLEELAAQFGLC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HDAH
publication title Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 139
structure length 369
sequence length 369
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g11A00
1C3SA 5DC6A 5EEKA 5G1AA 5THSA 2GH6A 4LY1A 3C0YA 4QA0A 2VQOA 5IWGA 4RN0A 5G0HA 3F06A 3Q9BA 5LI3A 1VKGA 3Q9EA 3SFFA 3MZ6A 5EFKB 5G13A 5D1CA 3SFHA 5G0IA 2VQMA 5G0YA 3Q9CA 4BZ6A 5FCWA 5EEFA 2VQJA 4BZ5A 5ICNB 5D1DA 1T69A 4QA5A 5G0JA 4CBTA 5EENA 5FUEA 3MZ3A 4QA6A 5A2SA 1C3RA 5EEIA 4BKXB 5THVA 1ZZ0A 1C3PA 5G11A 3F0RA 4QA2A 5G12A 5EFJD 5G1BA 4ZUQA 4CBYA 4BZ7A 4BZ9A 4QA7A 4ZUNA 4CQFA 1T64A 3C10A 3F07A 4BZ8A 3MZ4A 4ZUPA 2VQQA 3EZTA 2V5XA 2V5WA 3MAXA 5DC5A 4RN1A 4QA1A 5DC8A 5EFGA 1ZZ1A 5G0GA 5G1CA 3RQDA 4ZUMA 3ZNRA 5EFHA 5EFNA 5EEMA 5DC7A 4ZUOA 3MENA 2VQVA 3C0ZA 3EWFA 3MZ7A 5G0XA 5G17A 4QA4A 5THTA 4QA3A 5EF7A 3ZNSA 4A69A 4LXZA 4RN2A 5BWZA 5G10A 4ZURA 5G3WA 3EW8A 1ZZ3A 2VQWG 5IX0A 5THUA 5D1BA 5EF8A 2VCGA 3Q9FA 1T67A 5EFBD 5JI5A 1W22A 3EZPA
chains in the Genus database with same CATH superfamily
4GWDA 1C3SA 5DC6A 5EEKA 1GQ7A 5G1AA 5THSA 4FCKA 2GH6A 4LY1A 3C0YA 4RHQA 4QA0A 2VQOA 4Q3TA 4RN0A 5IWGA 5G0HA 3M1RA 1HQGA 4MYLA 3F06A 3THHA 3Q9BA 5LI3A 1VKGA 3Q9EA 3THEA 3CEVA 4Q3VA 3E6KA 1HQ5A 3SFFA 4CEVA 5CEVA 4Q3RA 3MZ6A 5EFKB 5G13A 5D1CA 4I06A 3SFHA 4G3HA 5G0IA 1HQFA 2VQMA 5G0YA 4GSVA 4ITYA 3Q9CA 4BZ6A 1ZPGA 5FCWA 5EEFA 2VQJA 4BZ5A 5ICNB 5D1DA 5HJ9A 1WVAA 1T69A 3SJTA 3LHLA 4QA5A 1P8PA 1P8QA 3NIPA 5EENA 5G0JA 4CBTA 1PQ3A 4IXUA 5FUEA 3MZ3A 3GN0A 3KV2A 4QA6A 4IE1A 4Q40A 1HQXA 3E9BA 4RHIA 4IU0A 3LP7A 5A2SA 4Q3QA 4IU5A 4RHKA 1C3RA 5EEIA 4BKXB 5THVA 3E8ZA 4DZ4A 4Q41A 2CEVA 4IU4A 1ZZ0A 1C3PA 3SL1A 2AEBA 1P8SA 5G11A 3F0RA 4QA2A 4MYNA 5G12A 4Q3PA 5EFJD 5G1BA 3MFVA 4ZUQA 4CBYA 4RHLA 4FCIA 3SKKA 4BZ7A 4BZ9A 1T4SA 4QA7A 1T4PA 1CEVA 4MXRA 4ZUNA 4GWCA 4CQFA 1T64A 1T5GA 2PLLA 1P8NA 3C10A 3F07A 4IU1A 3NIOA 4BZ8A 4Q3UA 3MZ4A 4ZUPA 3RLAA 4RHMA 4IE2A 4Q42A 2VQQA 3EZTA 4HXQA 2V5XA 2V5WA 3GMZA 3SL0A 4GSZA 1WOGA 3MAXA 3NIQA 5DC5A 4GSMA 3MMRA 2PHOA 1HQHA 4RN1A 2EIVA 4QA1A 3E6VA 5DC8A 5EFGA 5HJAA 1D3VA 1ZZ1A 2A0MA 5G0GA 5G1CA 3RQDA 2EF5A 2PHAA 4ZUMA 3MFWA 3ZNRA 1P8MA 4HZEA 5RLAA 5DC7A 4RLAA 5EFHA 5EFNA 5EEMA 3MENA 2VQVA 1XFKA 4RHJA 4ZUOA 1WOIA 1WOHA 3C0ZA 3EWFA 4IE3A 3MZ7A 5G0XA 5G17A 3DJ8A 4QA4A 5THTA 4QA3A 3LP4A 1P8RA 1GQ6A 4MYFA 5EF7A 3ZNSA 1R1OA 4LXZA 4A69A 3PZLA 1T4TA 4RN2A 4Q3RC 3TF3A 1TA1A 1T4RA 1TBLA 2EF4A 4IXVA 4HWWA 5BWZA 5G10A 4ZURA 5G3WA 3EW8A 1TBJA 1RLAA 1ZZ3A 2VQWG 2ZAVA 5IX0A 5THUA 5D1BA 5EF8A 2RLAA 4Q3SA 3TH7A 4MYKA 1ZPEA 2VCGA 3Q9FA 1T5FA 1T67A 3F80A 1P8OA 1TBHA 5EFBD 3THJA 1W22A 3MJLA 1WVBA 5JI5A 3EZPA 3E8QA
chains in the Genus database with same CATH topology
1C3SA 5DC6A 5EEKA 5G1AA 5THSA 2GH6A 4LY1A 3C0YA 4QA0A 2VQOA 5IWGA 4RN0A 5G0HA 3F06A 3Q9BA 5LI3A 1VKGA 3Q9EA 3SFFA 3MZ6A 5EFKB 5G13A 5D1CA 3SFHA 5G0IA 2VQMA 5G0YA 3Q9CA 4BZ6A 5FCWA 5EEFA 2VQJA 4BZ5A 5ICNB 5D1DA 1T69A 4QA5A 5G0JA 4CBTA 5EENA 5FUEA 3MZ3A 4QA6A 5A2SA 1C3RA 5EEIA 4BKXB 5THVA 1ZZ0A 1C3PA 5G11A 3F0RA 4QA2A 5G12A 5EFJD 5G1BA 4ZUQA 4CBYA 4BZ7A 4BZ9A 4QA7A 4ZUNA 4CQFA 1T64A 3C10A 3F07A 4BZ8A 3MZ4A 4ZUPA 2VQQA 3EZTA 2V5XA 2V5WA 3MAXA 5DC5A 4RN1A 4QA1A 5DC8A 5EFGA 1ZZ1A 5G0GA 5G1CA 3RQDA 4ZUMA 3ZNRA 5EFHA 5EFNA 5EEMA 5DC7A 4ZUOA 3MENA 2VQVA 3C0ZA 3EWFA 3MZ7A 5G0XA 5G17A 4QA4A 5THTA 4QA3A 5EF7A 3ZNSA 4A69A 4LXZA 4RN2A 5BWZA 5G10A 4ZURA 5G3WA 3EW8A 1ZZ3A 2VQWG 5IX0A 5THUA 5D1BA 5EF8A 2VCGA 3Q9FA 1T67A 5EFBD 5JI5A 1W22A 3EZPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3S A;  5DC6 A;  5EEK A;  5G1A A;  5THS A;  2GH6 A;  4LY1 A;  3C0Y A;  4QA0 A;  2VQO A;  5IWG A;  4RN0 A;  5G0H A;  3F06 A;  3Q9B A;  5LI3 A;  1VKG A;  3Q9E A;  3SFF A;  3MZ6 A;  5EFK B;  5G13 A;  5D1C A;  3SFH A;  5G0I A;  2VQM A;  5G0Y A;  3Q9C A;  4BZ6 A;  5FCW A;  5EEF A;  2VQJ A;  4BZ5 A;  5ICN B;  5D1D A;  1T69 A;  4QA5 A;  5G0J A;  4CBT A;  5EEN A;  5FUE A;  3MZ3 A;  4QA6 A;  5A2S A;  1C3R A;  5EEI A;  4BKX B;  5THV A;  1ZZ0 A;  1C3P A;  5G11 A;  3F0R A;  4QA2 A;  5G12 A;  5EFJ D;  5G1B A;  4ZUQ A;  4CBY A;  4BZ7 A;  4BZ9 A;  4QA7 A;  4ZUN A;  4CQF A;  1T64 A;  3C10 A;  3F07 A;  4BZ8 A;  3MZ4 A;  4ZUP A;  2VQQ A;  3EZT A;  2V5X A;  2V5W A;  3MAX A;  5DC5 A;  4RN1 A;  4QA1 A;  5DC8 A;  5EFG A;  1ZZ1 A;  5G0G A;  5G1C A;  3RQD A;  4ZUM A;  3ZNR A;  5EFH A;  5EFN A;  5EEM A;  5DC7 A;  4ZUO A;  3MEN A;  2VQV A;  3C0Z A;  3EWF A;  3MZ7 A;  5G0X A;  5G17 A;  4QA4 A;  5THT A;  4QA3 A;  5EF7 A;  3ZNS A;  4A69 A;  4LXZ A;  4RN2 A;  5BWZ A;  5G10 A;  4ZUR A;  5G3W A;  3EW8 A;  1ZZ3 A;  2VQW G;  5IX0 A;  5THU A;  5D1B A;  5EF8 A;  2VCG A;  3Q9F A;  1T67 A;  5EFB D;  5JI5 A;  1W22 A;  3EZP A; 
#chains in the Genus database with same CATH topology
 4GWD A;  1C3S A;  5DC6 A;  5EEK A;  1GQ7 A;  5G1A A;  5THS A;  4FCK A;  2GH6 A;  4LY1 A;  3C0Y A;  4RHQ A;  4QA0 A;  2VQO A;  4Q3T A;  4RN0 A;  5IWG A;  5G0H A;  3M1R A;  1HQG A;  4MYL A;  3F06 A;  3THH A;  3Q9B A;  5LI3 A;  1VKG A;  3Q9E A;  3THE A;  3CEV A;  4Q3V A;  3E6K A;  1HQ5 A;  3SFF A;  4CEV A;  5CEV A;  4Q3R A;  3MZ6 A;  5EFK B;  5G13 A;  5D1C A;  4I06 A;  3SFH A;  4G3H A;  5G0I A;  1HQF A;  2VQM A;  5G0Y A;  4GSV A;  4ITY A;  3Q9C A;  4BZ6 A;  1ZPG A;  5FCW A;  5EEF A;  2VQJ A;  4BZ5 A;  5ICN B;  5D1D A;  5HJ9 A;  1WVA A;  1T69 A;  3SJT A;  3LHL A;  4QA5 A;  1P8P A;  1P8Q A;  3NIP A;  5EEN A;  5G0J A;  4CBT A;  1PQ3 A;  4IXU A;  5FUE A;  3MZ3 A;  3GN0 A;  3KV2 A;  4QA6 A;  4IE1 A;  4Q40 A;  1HQX A;  3E9B A;  4RHI A;  4IU0 A;  3LP7 A;  5A2S A;  4Q3Q A;  4IU5 A;  4RHK A;  1C3R A;  5EEI A;  4BKX B;  5THV A;  3E8Z A;  4DZ4 A;  4Q41 A;  2CEV A;  4IU4 A;  1ZZ0 A;  1C3P A;  3SL1 A;  2AEB A;  1P8S A;  5G11 A;  3F0R A;  4QA2 A;  4MYN A;  5G12 A;  4Q3P A;  5EFJ D;  5G1B A;  3MFV A;  4ZUQ A;  4CBY A;  4RHL A;  4FCI A;  3SKK A;  4BZ7 A;  4BZ9 A;  1T4S A;  4QA7 A;  1T4P A;  1CEV A;  4MXR A;  4ZUN A;  4GWC A;  4CQF A;  1T64 A;  1T5G A;  2PLL A;  1P8N A;  3C10 A;  3F07 A;  4IU1 A;  3NIO A;  4BZ8 A;  4Q3U A;  3MZ4 A;  4ZUP A;  3RLA A;  4RHM A;  4IE2 A;  4Q42 A;  2VQQ A;  3EZT A;  4HXQ A;  2V5X A;  2V5W A;  3GMZ A;  3SL0 A;  4GSZ A;  1WOG A;  3MAX A;  3NIQ A;  5DC5 A;  4GSM A;  3MMR A;  2PHO A;  1HQH A;  4RN1 A;  2EIV A;  4QA1 A;  3E6V A;  5DC8 A;  5EFG A;  5HJA A;  1D3V A;  1ZZ1 A;  2A0M A;  5G0G A;  5G1C A;  3RQD A;  2EF5 A;  2PHA A;  4ZUM A;  3MFW A;  3ZNR A;  1P8M A;  4HZE A;  5RLA A;  5DC7 A;  4RLA A;  5EFH A;  5EFN A;  5EEM A;  3MEN A;  2VQV A;  1XFK A;  4RHJ A;  4ZUO A;  1WOI A;  1WOH A;  3C0Z A;  3EWF A;  4IE3 A;  3MZ7 A;  5G0X A;  5G17 A;  3DJ8 A;  4QA4 A;  5THT A;  4QA3 A;  3LP4 A;  1P8R A;  1GQ6 A;  4MYF A;  5EF7 A;  3ZNS A;  1R1O A;  4LXZ A;  4A69 A;  3PZL A;  1T4T A;  4RN2 A;  4Q3R C;  3TF3 A;  1TA1 A;  1T4R A;  1TBL A;  2EF4 A;  4IXV A;  4HWW A;  5BWZ A;  5G10 A;  4ZUR A;  5G3W A;  3EW8 A;  1TBJ A;  1RLA A;  1ZZ3 A;  2VQW G;  2ZAV A;  5IX0 A;  5THU A;  5D1B A;  5EF8 A;  2RLA A;  4Q3S A;  3TH7 A;  4MYK A;  1ZPE A;  2VCG A;  3Q9F A;  1T5F A;  1T67 A;  3F80 A;  1P8O A;  1TBH A;  5EFB D;  3THJ A;  1W22 A;  3MJL A;  1WVB A;  5JI5 A;  3EZP A;  3E8Q A; 
#chains in the Genus database with same CATH homology
 1C3S A;  5DC6 A;  5EEK A;  5G1A A;  5THS A;  2GH6 A;  4LY1 A;  3C0Y A;  4QA0 A;  2VQO A;  5IWG A;  4RN0 A;  5G0H A;  3F06 A;  3Q9B A;  5LI3 A;  1VKG A;  3Q9E A;  3SFF A;  3MZ6 A;  5EFK B;  5G13 A;  5D1C A;  3SFH A;  5G0I A;  2VQM A;  5G0Y A;  3Q9C A;  4BZ6 A;  5FCW A;  5EEF A;  2VQJ A;  4BZ5 A;  5ICN B;  5D1D A;  1T69 A;  4QA5 A;  5G0J A;  4CBT A;  5EEN A;  5FUE A;  3MZ3 A;  4QA6 A;  5A2S A;  1C3R A;  5EEI A;  4BKX B;  5THV A;  1ZZ0 A;  1C3P A;  5G11 A;  3F0R A;  4QA2 A;  5G12 A;  5EFJ D;  5G1B A;  4ZUQ A;  4CBY A;  4BZ7 A;  4BZ9 A;  4QA7 A;  4ZUN A;  4CQF A;  1T64 A;  3C10 A;  3F07 A;  4BZ8 A;  3MZ4 A;  4ZUP A;  2VQQ A;  3EZT A;  2V5X A;  2V5W A;  3MAX A;  5DC5 A;  4RN1 A;  4QA1 A;  5DC8 A;  5EFG A;  1ZZ1 A;  5G0G A;  5G1C A;  3RQD A;  4ZUM A;  3ZNR A;  5EFH A;  5EFN A;  5EEM A;  5DC7 A;  4ZUO A;  3MEN A;  2VQV A;  3C0Z A;  3EWF A;  3MZ7 A;  5G0X A;  5G17 A;  4QA4 A;  5THT A;  4QA3 A;  5EF7 A;  3ZNS A;  4A69 A;  4LXZ A;  4RN2 A;  5BWZ A;  5G10 A;  4ZUR A;  5G3W A;  3EW8 A;  1ZZ3 A;  2VQW G;  5IX0 A;  5THU A;  5D1B A;  5EF8 A;  2VCG A;  3Q9F A;  1T67 A;  5EFB D;  5JI5 A;  1W22 A;  3EZP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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