5G1CA

Structure of hdac like protein from bordetella alcaligenes bound the photoswitchable pyrazole inhibitor cew395
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
370
structure length
370
Chain Sequence
HHAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE
publication title Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
pubmed doi rcsb
source organism Alcaligenes
total genus 142
structure length 370
sequence length 370
chains with identical sequence B
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g1cA00
5EEKA 2VCGA 3F0RA 5EF7A 5THVA 5D1BA 4RN2A 1T67A 4A69A 4ZUQA 3EWFA 3Q9CA 4BZ9A 3Q9BA 3Q9FA 2VQOA 3SFHA 1W22A 1T69A 2VQMA 4QA1A 5THSA 4ZUMA 5G0IA 1ZZ3A 5EEIA 5G1BA 4BZ8A 5EFKB 5G3WA 4LXZA 5G13A 5DC5A 4CQFA 3SFFA 3F07A 3MAXA 5EFGA 5THUA 5BWZA 4BZ7A 5FUEA 4LY1A 3Q9EA 3MZ7A 4QA2A 5EFBD 1T64A 3MZ4A 1C3RA 5D1CA 5EFHA 4QA7A 4BKXB 5G0GA 5FCWA 5IX0A 4QA0A 5A2SA 4RN0A 5THTA 5DC8A 5EFJD 3ZNRA 5ICNB 5G12A 2GH6A 5EF8A 1C3SA 5G0XA 5LI3A 3MZ3A 2VQVA 4QA3A 4QA4A 5G0JA 5G10A 4ZUOA 5G11A 3MZ6A 3C10A 4QA5A 3C0ZA 3F06A 5G17A 5EENA 1ZZ1A 1C3PA 5G0HA 4RN1A 3RQDA 5EFNA 3C0YA 3EZTA 3EW8A 2V5WA 2VQJA 5G1AA 5G0YA 4QA6A 4CBTA 4BZ5A 1VKGA 5G1CA 5EEFA 5DC6A 3ZNSA 1ZZ0A 3MENA 3EZPA 4ZURA 2VQQA 2VQWG 5IWGA 5JI5A 5DC7A 5EEMA 5D1DA 4CBYA 4ZUNA 4BZ6A 2V5XA 4ZUPA
chains in the Genus database with same CATH superfamily
3LP7A 2VCGA 3F0RA 4GWCA 5EF7A 5D1BA 4MYLA 1ZPGA 5EEKA 4RN2A 1T67A 3SL1A 3F80A 3EWFA 4A69A 4ZUQA 1HQFA 4IU5A 1P8OA 3Q9CA 4RHLA 4BZ9A 3Q9BA 1HQXA 3Q9FA 3E8ZA 4RLAA 3E6VA 2VQOA 1ZPEA 3MFWA 3SFHA 4GWDA 2EF5A 1W22A 1T69A 2VQMA 4QA1A 5THSA 2ZAVA 3NIOA 4ZUMA 5G0IA 1T4TA 1WOIA 4RHJA 5HJAA 1ZZ3A 4FCKA 5EEIA 5G1BA 4BZ8A 4Q42A 4IXVA 5EFKB 3MMRA 3E6KA 4LXZA 5G3WA 5G13A 3THEA 1T4SA 5DC5A 4CEVA 4CQFA 3LHLA 4Q3RA 3F07A 3SFFA 3MAXA 1WOGA 5EFGA 4Q3RC 4Q3UA 1XFKA 5THUA 4Q3TA 3SJTA 5BWZA 4IXUA 4MYFA 3SL0A 1WOHA 4BZ7A 5FUEA 4LY1A 3Q9EA 4IE1A 3MZ7A 2A0MA 4QA2A 1GQ7A 4MYNA 4Q3VA 5EFBD 1T64A 3MZ4A 1C3RA 5D1CA 5EFHA 4QA7A 4BKXB 4DZ4A 1T4RA 3CEVA 5G0GA 5FCWA 2EIVA 1T5FA 5IX0A 1R1OA 4GSZA 4QA0A 5A2SA 4RN0A 4IU1A 5THTA 1WVAA 3DJ8A 5DC8A 5EFJD 3ZNRA 5G12A 5ICNB 1TBLA 2GH6A 5EF8A 1C3SA 3KV2A 5G0XA 5LI3A 3SKKA 4HWWA 3MZ3A 3TH7A 1T4PA 2VQVA 1P8MA 4QA3A 3MJLA 1P8NA 4QA4A 5G0JA 5G10A 4RHQA 4ZUOA 5G11A 1GQ6A 3MZ6A 3NIQA 4IE3A 3E8QA 1T5GA 3C10A 4Q3QA 1TBJA 4QA5A 3C0ZA 3F06A 2PHOA 1P8QA 5G17A 1HQ5A 3THHA 4Q3PA 1ZZ1A 1PQ3A 4IE2A 1C3PA 5EENA 3THJA 3LP4A 2AEBA 5G0HA 5RLAA 4RN1A 3RQDA 2PHAA 3C0YA 5EFNA 3EZTA 3EW8A 4Q3SA 2PLLA 2V5WA 4ITYA 3GMZA 2VQJA 4GSMA 1D3VA 1RLAA 4RHKA 4Q41A 1HQHA 4GSVA 1WVBA 4IU4A 5G1AA 1P8PA 4MYKA 5G0YA 5HJ9A 4QA6A 4FCIA 4CBTA 4BZ5A 2EF4A 1VKGA 4MXRA 4RHIA 4HXQA 4Q40A 3PZLA 5THVA 4HZEA 2RLAA 3GN0A 1TBHA 2CEVA 5G1CA 5CEVA 3MFVA 4G3HA 5EEFA 5DC6A 3ZNSA 1ZZ0A 3TF3A 4I06A 3MENA 3EZPA 4ZURA 4IU0A 2VQQA 2VQWG 5IWGA 5JI5A 5DC7A 3NIPA 1TA1A 5EEMA 1P8SA 5D1DA 4RHMA 3RLAA 1HQGA 3E9BA 4CBYA 1CEVA 4ZUNA 4BZ6A 1P8RA 2V5XA 4ZUPA 3M1RA
chains in the Genus database with same CATH topology
5EEKA 2VCGA 3F0RA 5EF7A 5THVA 5D1BA 4RN2A 1T67A 4A69A 4ZUQA 3EWFA 3Q9CA 4BZ9A 3Q9BA 3Q9FA 2VQOA 3SFHA 1W22A 1T69A 2VQMA 4QA1A 5THSA 4ZUMA 5G0IA 1ZZ3A 5EEIA 5G1BA 4BZ8A 5EFKB 5G3WA 4LXZA 5G13A 5DC5A 4CQFA 3SFFA 3F07A 3MAXA 5EFGA 5THUA 5BWZA 4BZ7A 5FUEA 4LY1A 3Q9EA 3MZ7A 4QA2A 5EFBD 1T64A 3MZ4A 1C3RA 5D1CA 5EFHA 4QA7A 4BKXB 5G0GA 5FCWA 5IX0A 4QA0A 5A2SA 4RN0A 5THTA 5DC8A 5EFJD 3ZNRA 5ICNB 5G12A 2GH6A 5EF8A 1C3SA 5G0XA 5LI3A 3MZ3A 2VQVA 4QA3A 4QA4A 5G0JA 5G10A 4ZUOA 5G11A 3MZ6A 3C10A 4QA5A 3C0ZA 3F06A 5G17A 5EENA 1ZZ1A 1C3PA 5G0HA 4RN1A 3RQDA 5EFNA 3C0YA 3EZTA 3EW8A 2V5WA 2VQJA 5G1AA 5G0YA 4QA6A 4CBTA 4BZ5A 1VKGA 5G1CA 5EEFA 5DC6A 3ZNSA 1ZZ0A 3MENA 3EZPA 4ZURA 2VQQA 2VQWG 5IWGA 5JI5A 5DC7A 5EEMA 5D1DA 4CBYA 4ZUNA 4BZ6A 2V5XA 4ZUPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EEK A;  2VCG A;  3F0R A;  5EF7 A;  5THV A;  5D1B A;  4RN2 A;  1T67 A;  4A69 A;  4ZUQ A;  3EWF A;  3Q9C A;  4BZ9 A;  3Q9B A;  3Q9F A;  2VQO A;  3SFH A;  1W22 A;  1T69 A;  2VQM A;  4QA1 A;  5THS A;  4ZUM A;  5G0I A;  1ZZ3 A;  5EEI A;  5G1B A;  4BZ8 A;  5EFK B;  5G3W A;  4LXZ A;  5G13 A;  5DC5 A;  4CQF A;  3SFF A;  3F07 A;  3MAX A;  5EFG A;  5THU A;  5BWZ A;  4BZ7 A;  5FUE A;  4LY1 A;  3Q9E A;  3MZ7 A;  4QA2 A;  5EFB D;  1T64 A;  3MZ4 A;  1C3R A;  5D1C A;  5EFH A;  4QA7 A;  4BKX B;  5G0G A;  5FCW A;  5IX0 A;  4QA0 A;  5A2S A;  4RN0 A;  5THT A;  5DC8 A;  5EFJ D;  3ZNR A;  5ICN B;  5G12 A;  2GH6 A;  5EF8 A;  1C3S A;  5G0X A;  5LI3 A;  3MZ3 A;  2VQV A;  4QA3 A;  4QA4 A;  5G0J A;  5G10 A;  4ZUO A;  5G11 A;  3MZ6 A;  3C10 A;  4QA5 A;  3C0Z A;  3F06 A;  5G17 A;  5EEN A;  1ZZ1 A;  1C3P A;  5G0H A;  4RN1 A;  3RQD A;  5EFN A;  3C0Y A;  3EZT A;  3EW8 A;  2V5W A;  2VQJ A;  5G1A A;  5G0Y A;  4QA6 A;  4CBT A;  4BZ5 A;  1VKG A;  5G1C A;  5EEF A;  5DC6 A;  3ZNS A;  1ZZ0 A;  3MEN A;  3EZP A;  4ZUR A;  2VQQ A;  2VQW G;  5IWG A;  5JI5 A;  5DC7 A;  5EEM A;  5D1D A;  4CBY A;  4ZUN A;  4BZ6 A;  2V5X A;  4ZUP A; 
#chains in the Genus database with same CATH topology
 3LP7 A;  2VCG A;  3F0R A;  4GWC A;  5EF7 A;  5D1B A;  4MYL A;  1ZPG A;  5EEK A;  4RN2 A;  1T67 A;  3SL1 A;  3F80 A;  3EWF A;  4A69 A;  4ZUQ A;  1HQF A;  4IU5 A;  1P8O A;  3Q9C A;  4RHL A;  4BZ9 A;  3Q9B A;  1HQX A;  3Q9F A;  3E8Z A;  4RLA A;  3E6V A;  2VQO A;  1ZPE A;  3MFW A;  3SFH A;  4GWD A;  2EF5 A;  1W22 A;  1T69 A;  2VQM A;  4QA1 A;  5THS A;  2ZAV A;  3NIO A;  4ZUM A;  5G0I A;  1T4T A;  1WOI A;  4RHJ A;  5HJA A;  1ZZ3 A;  4FCK A;  5EEI A;  5G1B A;  4BZ8 A;  4Q42 A;  4IXV A;  5EFK B;  3MMR A;  3E6K A;  4LXZ A;  5G3W A;  5G13 A;  3THE A;  1T4S A;  5DC5 A;  4CEV A;  4CQF A;  3LHL A;  4Q3R A;  3F07 A;  3SFF A;  3MAX A;  1WOG A;  5EFG A;  4Q3R C;  4Q3U A;  1XFK A;  5THU A;  4Q3T A;  3SJT A;  5BWZ A;  4IXU A;  4MYF A;  3SL0 A;  1WOH A;  4BZ7 A;  5FUE A;  4LY1 A;  3Q9E A;  4IE1 A;  3MZ7 A;  2A0M A;  4QA2 A;  1GQ7 A;  4MYN A;  4Q3V A;  5EFB D;  1T64 A;  3MZ4 A;  1C3R A;  5D1C A;  5EFH A;  4QA7 A;  4BKX B;  4DZ4 A;  1T4R A;  3CEV A;  5G0G A;  5FCW A;  2EIV A;  1T5F A;  5IX0 A;  1R1O A;  4GSZ A;  4QA0 A;  5A2S A;  4RN0 A;  4IU1 A;  5THT A;  1WVA A;  3DJ8 A;  5DC8 A;  5EFJ D;  3ZNR A;  5G12 A;  5ICN B;  1TBL A;  2GH6 A;  5EF8 A;  1C3S A;  3KV2 A;  5G0X A;  5LI3 A;  3SKK A;  4HWW A;  3MZ3 A;  3TH7 A;  1T4P A;  2VQV A;  1P8M A;  4QA3 A;  3MJL A;  1P8N A;  4QA4 A;  5G0J A;  5G10 A;  4RHQ A;  4ZUO A;  5G11 A;  1GQ6 A;  3MZ6 A;  3NIQ A;  4IE3 A;  3E8Q A;  1T5G A;  3C10 A;  4Q3Q A;  1TBJ A;  4QA5 A;  3C0Z A;  3F06 A;  2PHO A;  1P8Q A;  5G17 A;  1HQ5 A;  3THH A;  4Q3P A;  1ZZ1 A;  1PQ3 A;  4IE2 A;  1C3P A;  5EEN A;  3THJ A;  3LP4 A;  2AEB A;  5G0H A;  5RLA A;  4RN1 A;  3RQD A;  2PHA A;  3C0Y A;  5EFN A;  3EZT A;  3EW8 A;  4Q3S A;  2PLL A;  2V5W A;  4ITY A;  3GMZ A;  2VQJ A;  4GSM A;  1D3V A;  1RLA A;  4RHK A;  4Q41 A;  1HQH A;  4GSV A;  1WVB A;  4IU4 A;  5G1A A;  1P8P A;  4MYK A;  5G0Y A;  5HJ9 A;  4QA6 A;  4FCI A;  4CBT A;  4BZ5 A;  2EF4 A;  1VKG A;  4MXR A;  4RHI A;  4HXQ A;  4Q40 A;  3PZL A;  5THV A;  4HZE A;  2RLA A;  3GN0 A;  1TBH A;  2CEV A;  5G1C A;  5CEV A;  3MFV A;  4G3H A;  5EEF A;  5DC6 A;  3ZNS A;  1ZZ0 A;  3TF3 A;  4I06 A;  3MEN A;  3EZP A;  4ZUR A;  4IU0 A;  2VQQ A;  2VQW G;  5IWG A;  5JI5 A;  5DC7 A;  3NIP A;  1TA1 A;  5EEM A;  1P8S A;  5D1D A;  4RHM A;  3RLA A;  1HQG A;  3E9B A;  4CBY A;  1CEV A;  4ZUN A;  4BZ6 A;  1P8R A;  2V5X A;  4ZUP A;  3M1R A; 
#chains in the Genus database with same CATH homology
 5EEK A;  2VCG A;  3F0R A;  5EF7 A;  5THV A;  5D1B A;  4RN2 A;  1T67 A;  4A69 A;  4ZUQ A;  3EWF A;  3Q9C A;  4BZ9 A;  3Q9B A;  3Q9F A;  2VQO A;  3SFH A;  1W22 A;  1T69 A;  2VQM A;  4QA1 A;  5THS A;  4ZUM A;  5G0I A;  1ZZ3 A;  5EEI A;  5G1B A;  4BZ8 A;  5EFK B;  5G3W A;  4LXZ A;  5G13 A;  5DC5 A;  4CQF A;  3SFF A;  3F07 A;  3MAX A;  5EFG A;  5THU A;  5BWZ A;  4BZ7 A;  5FUE A;  4LY1 A;  3Q9E A;  3MZ7 A;  4QA2 A;  5EFB D;  1T64 A;  3MZ4 A;  1C3R A;  5D1C A;  5EFH A;  4QA7 A;  4BKX B;  5G0G A;  5FCW A;  5IX0 A;  4QA0 A;  5A2S A;  4RN0 A;  5THT A;  5DC8 A;  5EFJ D;  3ZNR A;  5ICN B;  5G12 A;  2GH6 A;  5EF8 A;  1C3S A;  5G0X A;  5LI3 A;  3MZ3 A;  2VQV A;  4QA3 A;  4QA4 A;  5G0J A;  5G10 A;  4ZUO A;  5G11 A;  3MZ6 A;  3C10 A;  4QA5 A;  3C0Z A;  3F06 A;  5G17 A;  5EEN A;  1ZZ1 A;  1C3P A;  5G0H A;  4RN1 A;  3RQD A;  5EFN A;  3C0Y A;  3EZT A;  3EW8 A;  2V5W A;  2VQJ A;  5G1A A;  5G0Y A;  4QA6 A;  4CBT A;  4BZ5 A;  1VKG A;  5G1C A;  5EEF A;  5DC6 A;  3ZNS A;  1ZZ0 A;  3MEN A;  3EZP A;  4ZUR A;  2VQQ A;  2VQW G;  5IWG A;  5JI5 A;  5DC7 A;  5EEM A;  5D1D A;  4CBY A;  4ZUN A;  4BZ6 A;  2V5X A;  4ZUP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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