5GAHO

Rnc in complex with srp with detached ng domain
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
125
structure length
125
Chain Sequence
MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 38
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 5gahO01
4WFBK 1GD8A 4UY8N 4IOCK 5H1SP 4U67K 3PIOK 2ZJPK 2CQMA 5JVGK 5GAEO 4WFNK 3PIPK 5HL7K 4IO9K 5GADO 5JVHK 3DLLK 4WF9K 5GAGO 3CF5K 5GAHO 5DM7K 5DM6K 4WFAK 2ZJRK 2ZJQK 3J7ZN 4IOAK 4WCEK 5MLCP
chains in the Genus database with same CATH superfamily
4WFBK 1GD8A 4UY8N 4IOCK 5H1SP 4U67K 3PIOK 2ZJPK 2CQMA 5JVGK 5GAEO 4WFNK 3PIPK 5HL7K 4IO9K 5GADO 5JVHK 3DLLK 4WF9K 5GAGO 3CF5K 5GAHO 5DM7K 5DM6K 4WFAK 2ZJRK 2ZJQK 3J7ZN 4IOAK 4WCEK 5MLCP
chains in the Genus database with same CATH topology
4WFBK 1GD8A 4UY8N 4IOCK 5H1SP 4U67K 3PIOK 2ZJPK 2CQMA 5JVGK 5GAEO 4WFNK 3PIPK 5HL7K 4IO9K 5GADO 5JVHK 3DLLK 4WF9K 5GAGO 3CF5K 5GAHO 5DM7K 5DM6K 4WFAK 2ZJRK 2ZJQK 3J7ZN 4IOAK 4WCEK 5MLCP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFB K;  1GD8 A;  4UY8 N;  4IOC K;  5H1S P;  4U67 K;  3PIO K;  2ZJP K;  2CQM A;  5JVG K;  5GAE O;  4WFN K;  3PIP K;  5HL7 K;  4IO9 K;  5GAD O;  5JVH K;  3DLL K;  4WF9 K;  5GAG O;  3CF5 K;  5GAH O;  5DM7 K;  5DM6 K;  4WFA K;  2ZJR K;  2ZJQ K;  3J7Z N;  4IOA K;  4WCE K;  5MLC P; 
#chains in the Genus database with same CATH topology
 4WFB K;  1GD8 A;  4UY8 N;  4IOC K;  5H1S P;  4U67 K;  3PIO K;  2ZJP K;  2CQM A;  5JVG K;  5GAE O;  4WFN K;  3PIP K;  5HL7 K;  4IO9 K;  5GAD O;  5JVH K;  3DLL K;  4WF9 K;  5GAG O;  3CF5 K;  5GAH O;  5DM7 K;  5DM6 K;  4WFA K;  2ZJR K;  2ZJQ K;  3J7Z N;  4IOA K;  4WCE K;  5MLC P; 
#chains in the Genus database with same CATH homology
 4WFB K;  1GD8 A;  4UY8 N;  4IOC K;  5H1S P;  4U67 K;  3PIO K;  2ZJP K;  2CQM A;  5JVG K;  5GAE O;  4WFN K;  3PIP K;  5HL7 K;  4IO9 K;  5GAD O;  5JVH K;  3DLL K;  4WF9 K;  5GAG O;  3CF5 K;  5GAH O;  5DM7 K;  5DM6 K;  4WFA K;  2ZJR K;  2ZJQ K;  3J7Z N;  4IOA K;  4WCE K;  5MLC P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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