5GJWE

Structure of the mammalian voltage-gated calcium channel cav1.1 complex for classii map
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
216
structure length
166
Chain Sequence
MSPTEAPKVRVTLFCILVGIVLAMTAVVSDHWAVLSPHCEAAHFGLWRICTKRGEKNCSYFSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIEYYYSWSFACACAAFVLLFLGGISLLLFSLPRMPQNPWESCM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Voltage-dependent L-type calcium channel subunit alpha-1S
publication title Structure of the voltage-gated calcium channel Cav1.1 at 3.6 angstrom resolution
pubmed doi rcsb
source organism Oryctolagus cuniculus
total genus 44
structure length 166
sequence length 216
ec nomenclature
pdb deposition date 2016-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF13903 Claudin_2 PMP-22/EMP/MP20/Claudin tight junction
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 5gjwE00
5GJVE 3X29A 4P79A 5GJWE
chains in the Genus database with same CATH superfamily
1XFUA 2BU2A 3EONA 3TZ4A 5M4NA 2Q8GA 4MPCA 4JIZA 4LQSB 3TZ5A 3C3LA 2BU5A 3AFEA 4KTOA 4LQQB 2YYLA 2OEVA 2YYMA 1R2JA 3OWAA 4L3ZA 4AKHA 1LVCA 4AKGA 2R0MA 3RKHA 1EGEA 3D9GA 2JIFA 1XFVA 3EOMA 3LGQA 1T9GA 3X0XA 1GJVA 4M9AA 2E80A 2VF1A 3MKHA 2CJ8A 2FP1A 1BUCA 4FF4A 5B5WA 3MPJA 3MDEA 1WS9A 3D9FA 4V25A 3P4TA 1X8ZA 5M4MA 3VKGA 4O5MA 1XFWA 2EBHX 1IVHA 2F6LA 1SK6A 3BNJA 3AFFA 3D2RA 4X28A 3C46A 4AI6A 3UBRA 3CRKA 4MP2A 3TTBA 3PFDA 5GJWE 3TZ0A 2DVLA 1JM6A 1OAHA 4QICA 3UU9A 1EGDA 2ZDXA 2FP2A 2JBTA 3VKHA 4ZXVA 1PK0A 4JEKA 1XFXA 2PG0A 3TORA 4Q17A 4FZ4A 2GBBA 2IX5A 4N5FA 2DDHA 1JQIA 1RJ1A 2FONA 3Q24A 2CJ6A 3D9DA 4OO2A 2A1TA 1FS7A 4IRNA 4Q1OA 4XVXA 5BRMA 5M4PA 4AKIA 2WBIA 1SIRA 1K93A 4RM7A 4E02A 3BNGA 5M4KA 1S26A 2BU7A 4Q5BA 2RFQA 5B6BA 2Q8IA 2XS1A 3MXLA 4L3YA 2CX9A 3TZ2A 2E0AA 3BNFA 4DOYA 2CJ7A 3SXQA 2PNRA 1UKWA 2BTZA 4U83A 4G97A 4P13A 1XFYA 2XS8A 4DZYA 1Y8OA 2QR4A 1RJ4A 2IX6A 2UXWA 2Z1QA 5K3GA 1Y0VA 2YGWA 4ZYJA 2R05A 4Q0TA 3X29A 2REHA 3KMLA 4L38A 1GKXA 1X90A 3F29A 4H7QA 4HR3A 4J1VA 2HJNA 3C2PA 3HWCA 2RF7A 3L1TA 4WJYA 3Q22A 1EGCA 1UDYA 3SF6A 4JIOA 3GQTA 5K3HA 2XQRB 2OT4A 3GM6A 2ZKJA 3OIBA 4FF3A 2EBAA 2LFWA 4KSFA 2EC5A 3NF4A 2C0UA 2AO2A 4E01A 5BRKA 2BU6A 2D29A 4MP7A 5B5VA 4MPEA 1Y8PA 2VIGA 3S7WA 4HKSA 2OEXA 4KCFA 4Q4UA 1RP3A 1SC5A 3SCEA 1FS8A 1W07A 2E81A 2JBRA 3FCJA 2ZAFA 3D9EA 1K90A 4L1FA 5J6AA 3FO3A 2C12A 2YYIA 4G5EA 4H85A 2RDZA 4KSAA 2R0NA 2PO4A 4L3XA 1IS2A 2ZDYA 2EBFX 2OJQA 1XFZA 3CRLA 3D1IA 3GNCA 1U8VA 3MPIA 3N0RA 1X91A 5K3IA 3Q23A 4H81A 3II9A 4HKRA 5GJVE 2YYJA 3D6BA 3R7KA 3X0YA 4FF2A 1FS9A 1SIQA 2ZO5A 3M9VA 2Q8FA 1PI1A 5K3JA 3B96A 3LG1A 4FF1A 3MMOA 4E00A 3Q0AA 2YYKA 1QDBA 1GKZA 2R03A 4P79A 3BNHA 2CJ5A 4F0XA 2J7AA 3MDDA 4MPNA 4NXLA 2BU8A 4KS9A 1XG2B 2AZEA 4Q5CA 2CJ4A 4V26A 4W9UA 4IV6A 3SWOA 1R3BA 2OR0A 4X28C 2VR0A 3CE2A 5J71A 3OWMA 1GU6A 2YYGA 1K8TA 1RX0A 1Y8NA 2R02A 2JBSA 2Q8HA 3VADA
chains in the Genus database with same CATH topology
2YGWA 3VKHA 1XFUA 2FP2A 4KSAA 3X29A 3KMLA 1PK0A 2PO4A 1XFXA 3C2PA 2EBFX 1XFZA 3N0RA 3Q23A 4FZ4A 2GBBA 4AKGA 4AKHA 1LVCA 3Q22A 4HKRA 5GJVE 3Q24A 1XFVA 4FF2A 4AKIA 4FF1A 3Q0AA 1K93A 2VF1A 4FF3A 2FP1A 2LFWA 4KSFA 1S26A 4P79A 2EC5A 3C3LA 2AO2A 4FF4A 4F0XA 3VKGA 4KS9A 2AZEA 1XFWA 2EBHX 2F6LA 1SK6A 4HKSA 3C46A 1RP3A 1SC5A 4AI6A 4G97A 1XFYA 3CE2A 1K90A 5GJWE 1K8TA 2QR4A 4QICA 1Y0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GJV E;  3X29 A;  4P79 A;  5GJW E; 
#chains in the Genus database with same CATH topology
 1XFU A;  2BU2 A;  3EON A;  3TZ4 A;  5M4N A;  2Q8G A;  4MPC A;  4JIZ A;  4LQS B;  3TZ5 A;  3C3L A;  2BU5 A;  3AFE A;  4KTO A;  4LQQ B;  2YYL A;  2OEV A;  2YYM A;  1R2J A;  3OWA A;  4L3Z A;  4AKH A;  1LVC A;  4AKG A;  2R0M A;  3RKH A;  1EGE A;  3D9G A;  2JIF A;  1XFV A;  3EOM A;  3LGQ A;  1T9G A;  3X0X A;  1GJV A;  4M9A A;  2E80 A;  2VF1 A;  3MKH A;  2CJ8 A;  2FP1 A;  1BUC A;  4FF4 A;  5B5W A;  3MPJ A;  3MDE A;  1WS9 A;  3D9F A;  4V25 A;  3P4T A;  1X8Z A;  5M4M A;  3VKG A;  4O5M A;  1XFW A;  2EBH X;  1IVH A;  2F6L A;  1SK6 A;  3BNJ A;  3AFF A;  3D2R A;  4X28 A;  3C46 A;  4AI6 A;  3UBR A;  3CRK A;  4MP2 A;  3TTB A;  3PFD A;  5GJW E;  3TZ0 A;  2DVL A;  1JM6 A;  1OAH A;  4QIC A;  3UU9 A;  1EGD A;  2ZDX A;  2FP2 A;  2JBT A;  3VKH A;  4ZXV A;  1PK0 A;  4JEK A;  1XFX A;  2PG0 A;  3TOR A;  4Q17 A;  4FZ4 A;  2GBB A;  2IX5 A;  4N5F A;  2DDH A;  1JQI A;  1RJ1 A;  2FON A;  3Q24 A;  2CJ6 A;  3D9D A;  4OO2 A;  2A1T A;  1FS7 A;  4IRN A;  4Q1O A;  4XVX A;  5BRM A;  5M4P A;  4AKI A;  2WBI A;  1SIR A;  1K93 A;  4RM7 A;  4E02 A;  3BNG A;  5M4K A;  1S26 A;  2BU7 A;  4Q5B A;  2RFQ A;  5B6B A;  2Q8I A;  2XS1 A;  3MXL A;  4L3Y A;  2CX9 A;  3TZ2 A;  2E0A A;  3BNF A;  4DOY A;  2CJ7 A;  3SXQ A;  2PNR A;  1UKW A;  2BTZ A;  4U83 A;  4G97 A;  4P13 A;  1XFY A;  2XS8 A;  4DZY A;  1Y8O A;  2QR4 A;  1RJ4 A;  2IX6 A;  2UXW A;  2Z1Q A;  5K3G A;  1Y0V A;  2YGW A;  4ZYJ A;  2R05 A;  4Q0T A;  3X29 A;  2REH A;  3KML A;  4L38 A;  1GKX A;  1X90 A;  3F29 A;  4H7Q A;  4HR3 A;  4J1V A;  2HJN A;  3C2P A;  3HWC A;  2RF7 A;  3L1T A;  4WJY A;  3Q22 A;  1EGC A;  1UDY A;  3SF6 A;  4JIO A;  3GQT A;  5K3H A;  2XQR B;  2OT4 A;  3GM6 A;  2ZKJ A;  3OIB A;  4FF3 A;  2EBA A;  2LFW A;  4KSF A;  2EC5 A;  3NF4 A;  2C0U A;  2AO2 A;  4E01 A;  5BRK A;  2BU6 A;  2D29 A;  4MP7 A;  5B5V A;  4MPE A;  1Y8P A;  2VIG A;  3S7W A;  4HKS A;  2OEX A;  4KCF A;  4Q4U A;  1RP3 A;  1SC5 A;  3SCE A;  1FS8 A;  1W07 A;  2E81 A;  2JBR A;  3FCJ A;  2ZAF A;  3D9E A;  1K90 A;  4L1F A;  5J6A A;  3FO3 A;  2C12 A;  2YYI A;  4G5E A;  4H85 A;  2RDZ A;  4KSA A;  2R0N A;  2PO4 A;  4L3X A;  1IS2 A;  2ZDY A;  2EBF X;  2OJQ A;  1XFZ A;  3CRL A;  3D1I A;  3GNC A;  1U8V A;  3MPI A;  3N0R A;  1X91 A;  5K3I A;  3Q23 A;  4H81 A;  3II9 A;  4HKR A;  5GJV E;  2YYJ A;  3D6B A;  3R7K A;  3X0Y A;  4FF2 A;  1FS9 A;  1SIQ A;  2ZO5 A;  3M9V A;  2Q8F A;  1PI1 A;  5K3J A;  3B96 A;  3LG1 A;  4FF1 A;  3MMO A;  4E00 A;  3Q0A A;  2YYK A;  1QDB A;  1GKZ A;  2R03 A;  4P79 A;  3BNH A;  2CJ5 A;  4F0X A;  2J7A A;  3MDD A;  4MPN A;  4NXL A;  2BU8 A;  4KS9 A;  1XG2 B;  2AZE A;  4Q5C A;  2CJ4 A;  4V26 A;  4W9U A;  4IV6 A;  3SWO A;  1R3B A;  2OR0 A;  4X28 C;  2VR0 A;  3CE2 A;  5J71 A;  3OWM A;  1GU6 A;  2YYG A;  1K8T A;  1RX0 A;  1Y8N A;  2R02 A;  2JBS A;  2Q8H A;  3VAD A; 
#chains in the Genus database with same CATH homology
 2YGW A;  3VKH A;  1XFU A;  2FP2 A;  4KSA A;  3X29 A;  3KML A;  1PK0 A;  2PO4 A;  1XFX A;  3C2P A;  2EBF X;  1XFZ A;  3N0R A;  3Q23 A;  4FZ4 A;  2GBB A;  4AKG A;  4AKH A;  1LVC A;  3Q22 A;  4HKR A;  5GJV E;  3Q24 A;  1XFV A;  4FF2 A;  4AKI A;  4FF1 A;  3Q0A A;  1K93 A;  2VF1 A;  4FF3 A;  2FP1 A;  2LFW A;  4KSF A;  1S26 A;  4P79 A;  2EC5 A;  3C3L A;  2AO2 A;  4FF4 A;  4F0X A;  3VKG A;  4KS9 A;  2AZE A;  1XFW A;  2EBH X;  2F6L A;  1SK6 A;  4HKS A;  3C46 A;  1RP3 A;  1SC5 A;  4AI6 A;  4G97 A;  1XFY A;  3CE2 A;  1K90 A;  5GJW E;  1K8T A;  2QR4 A;  4QIC A;  1Y0V A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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