5GLSA

Structure of bovine lactoperoxidase with a partially modified covalent bond with heme moiety
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDSRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQKKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Structure of bovine lactoperoxidase with a partially linked heme moiety at 1.98 angstrom resolution
pubmed doi rcsb
total genus 189
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2016-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 5glsA00
2O86A 3OGWA 1CXPC 4RRXA 4MSFA 1DIYA 2IKCA 3KK6A 3GC1A 3UBAA 4RRZA 1CVUA 4PH9A 2EFBA 3SXVA 3GCKA 1EBVA 3I6NA 3HS5A 4KVKA 4N7AA 3R5QA 1MYPC 4KVJA 3N8XA 3S4FA 4Y55A 5JVYA 1DNWC 3MDLA 3GCJA 3N8FA 3FAQA 3N8WB 4KSZA 3R55A 3R4XA 3ZS0C 4QJQA 3R5OA 1HT5A 3RKEA 2AYLA 3V6QA 5IKTA 5IKRA 1DNUC 4RRWA 5B72A 3Q9KA 4NT3A 3OLTA 4Z0LA 2GJMA 3TZIA 3GCLA 4RRYA 3MQEA 1IGZA 4OTYA 4FM5A 4HHSA 5GH0A 2R5LA 3HS7A 5FDQA 2NQXA 3TGYA 1Q4GA 4PNXA 2OJVA 1MHLC 2QPKA 3NT1A 3RR3A 6COXA 4GN6A 4KVLA 3ERHA 4QYQA 5F19A 3Q7DA 5IKQA 3NYHA 1FE2A 3KRKA 3PGHA 2E9EA 1EQHA 2OYUP 3N8YA 1PRHA 4RUTA 1HT8A 2QRBA 3KRQA 4IG5A 1D2VC 3LN0A 3NAKA 3PY4A 3N8VA 4RS0A 1D5LC 4HHRA 3N8ZA 1EQGA 1PTHA 3NTBA 3OLUA 2QQTA 1PXXA 4M10A 5HPWA 3NTGA 1CQEA 2PT3A 3LN1A 4GM7A 4O1ZA 4OEKA 5FIWC 1IGXA 5FF1A 3QH0A 4E1GA 1PGEA 2PUMA 3FNLA 1CX2A 3ZS1C 5JW1A 4LJJA 4DL1C 3BXIA 3QF1A 3N8YB 3HS6A 4OTJA 5GLSA 3ERIA 5F1AA 3QL6A 2Z5ZA 1DDXA 2OYEP 3F9PC 3N8WA 1D7WC 5COXA 5JVZA 5KIRA 4NJBA 3NIUA 5IKVA 4C1MC 2EHAA 1U67A 3QMOA 2IPSA 4COXA 4M11A
chains in the Genus database with same CATH superfamily
2O86A 3OGWA 1CXPC 4RRXA 4MSFA 1DIYA 2IKCA 3KK6A 3GC1A 3UBAA 4RRZA 1CVUA 4PH9A 2EFBA 3SXVA 3GCKA 1EBVA 3I6NA 3HS5A 4KVKA 4N7AA 3R5QA 1MYPC 4KVJA 3N8XA 3S4FA 4Y55A 5JVYA 1DNWC 3MDLA 3GCJA 3N8FA 3FAQA 3N8WB 4KSZA 3R55A 3R4XA 3ZS0C 4QJQA 3R5OA 1HT5A 3RKEA 2AYLA 3V6QA 5IKTA 5IKRA 1DNUC 4RRWA 5B72A 3Q9KA 4NT3A 3OLTA 4Z0LA 2GJMA 3TZIA 3GCLA 4RRYA 3MQEA 1IGZA 4OTYA 4FM5A 4HHSA 5GH0A 2R5LA 3HS7A 5FDQA 2NQXA 3TGYA 1Q4GA 4PNXA 2OJVA 1MHLC 2QPKA 3NT1A 3RR3A 6COXA 4GN6A 4KVLA 3ERHA 4QYQA 5F19A 3Q7DA 5IKQA 3NYHA 1FE2A 3KRKA 3PGHA 2E9EA 1EQHA 2OYUP 3N8YA 1PRHA 4RUTA 1HT8A 2QRBA 3KRQA 4IG5A 1D2VC 3LN0A 3NAKA 3PY4A 3N8VA 4RS0A 1D5LC 4HHRA 3N8ZA 1EQGA 1PTHA 3NTBA 3OLUA 2QQTA 1PXXA 4M10A 5HPWA 3NTGA 1CQEA 2PT3A 3LN1A 4GM7A 4O1ZA 4OEKA 5FIWC 1IGXA 5FF1A 3QH0A 4E1GA 1PGEA 2PUMA 3FNLA 1CX2A 3ZS1C 5JW1A 4LJJA 4DL1C 3BXIA 3QF1A 3N8YB 3HS6A 4OTJA 5GLSA 3ERIA 5F1AA 3QL6A 2Z5ZA 1DDXA 2OYEP 3F9PC 3N8WA 1D7WC 5COXA 5JVZA 5KIRA 4NJBA 3NIUA 5IKVA 4C1MC 2EHAA 1U67A 3QMOA 2IPSA 4COXA 4M11A
chains in the Genus database with same CATH topology
2O86A 3OGWA 1CXPC 4RRXA 4MSFA 1DIYA 2IKCA 3KK6A 3GC1A 3UBAA 4RRZA 1CVUA 4PH9A 2EFBA 3SXVA 3GCKA 1EBVA 3I6NA 3HS5A 4KVKA 4N7AA 3R5QA 1MYPC 4KVJA 3N8XA 3S4FA 4Y55A 5JVYA 1DNWC 3MDLA 3GCJA 3N8FA 3FAQA 3N8WB 4KSZA 3R55A 3R4XA 3ZS0C 4QJQA 3R5OA 1HT5A 3RKEA 2AYLA 3V6QA 5IKTA 5IKRA 1DNUC 4RRWA 5B72A 3Q9KA 4NT3A 3OLTA 4Z0LA 2GJMA 3TZIA 3GCLA 4RRYA 3MQEA 1IGZA 4OTYA 4FM5A 4HHSA 5GH0A 2R5LA 3HS7A 5FDQA 2NQXA 3TGYA 1Q4GA 4PNXA 2OJVA 1MHLC 2QPKA 3NT1A 3RR3A 6COXA 4GN6A 4KVLA 3ERHA 4QYQA 5F19A 3Q7DA 5IKQA 3NYHA 1FE2A 3KRKA 3PGHA 2E9EA 1EQHA 2OYUP 3N8YA 1PRHA 4RUTA 1HT8A 2QRBA 3KRQA 4IG5A 1D2VC 3LN0A 3NAKA 3PY4A 3N8VA 4RS0A 1D5LC 4HHRA 3N8ZA 1EQGA 1PTHA 3NTBA 3OLUA 2QQTA 1PXXA 4M10A 5HPWA 3NTGA 1CQEA 2PT3A 3LN1A 4GM7A 4O1ZA 4OEKA 5FIWC 1IGXA 5FF1A 3QH0A 4E1GA 1PGEA 2PUMA 3FNLA 1CX2A 3ZS1C 5JW1A 4LJJA 4DL1C 3BXIA 3QF1A 3N8YB 3HS6A 4OTJA 5GLSA 3ERIA 5F1AA 3QL6A 2Z5ZA 1DDXA 2OYEP 3F9PC 3N8WA 1D7WC 5COXA 5JVZA 5KIRA 4NJBA 3NIUA 5IKVA 4C1MC 2EHAA 1U67A 3QMOA 2IPSA 4COXA 4M11A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O86 A;  3OGW A;  1CXP C;  4RRX A;  4MSF A;  1DIY A;  2IKC A;  3KK6 A;  3GC1 A;  3UBA A;  4RRZ A;  1CVU A;  4PH9 A;  2EFB A;  3SXV A;  3GCK A;  1EBV A;  3I6N A;  3HS5 A;  4KVK A;  4N7A A;  3R5Q A;  1MYP C;  4KVJ A;  3N8X A;  3S4F A;  4Y55 A;  5JVY A;  1DNW C;  3MDL A;  3GCJ A;  3N8F A;  3FAQ A;  3N8W B;  4KSZ A;  3R55 A;  3R4X A;  3ZS0 C;  4QJQ A;  3R5O A;  1HT5 A;  3RKE A;  2AYL A;  3V6Q A;  5IKT A;  5IKR A;  1DNU C;  4RRW A;  5B72 A;  3Q9K A;  4NT3 A;  3OLT A;  4Z0L A;  2GJM A;  3TZI A;  3GCL A;  4RRY A;  3MQE A;  1IGZ A;  4OTY A;  4FM5 A;  4HHS A;  5GH0 A;  2R5L A;  3HS7 A;  5FDQ A;  2NQX A;  3TGY A;  1Q4G A;  4PNX A;  2OJV A;  1MHL C;  2QPK A;  3NT1 A;  3RR3 A;  6COX A;  4GN6 A;  4KVL A;  3ERH A;  4QYQ A;  5F19 A;  3Q7D A;  5IKQ A;  3NYH A;  1FE2 A;  3KRK A;  3PGH A;  2E9E A;  1EQH A;  2OYU P;  3N8Y A;  1PRH A;  4RUT A;  1HT8 A;  2QRB A;  3KRQ A;  4IG5 A;  1D2V C;  3LN0 A;  3NAK A;  3PY4 A;  3N8V A;  4RS0 A;  1D5L C;  4HHR A;  3N8Z A;  1EQG A;  1PTH A;  3NTB A;  3OLU A;  2QQT A;  1PXX A;  4M10 A;  5HPW A;  3NTG A;  1CQE A;  2PT3 A;  3LN1 A;  4GM7 A;  4O1Z A;  4OEK A;  5FIW C;  1IGX A;  5FF1 A;  3QH0 A;  4E1G A;  1PGE A;  2PUM A;  3FNL A;  1CX2 A;  3ZS1 C;  5JW1 A;  4LJJ A;  4DL1 C;  3BXI A;  3QF1 A;  3N8Y B;  3HS6 A;  4OTJ A;  5GLS A;  3ERI A;  5F1A A;  3QL6 A;  2Z5Z A;  1DDX A;  2OYE P;  3F9P C;  3N8W A;  1D7W C;  5COX A;  5JVZ A;  5KIR A;  4NJB A;  3NIU A;  5IKV A;  4C1M C;  2EHA A;  1U67 A;  3QMO A;  2IPS A;  4COX A;  4M11 A; 
#chains in the Genus database with same CATH topology
 2O86 A;  3OGW A;  1CXP C;  4RRX A;  4MSF A;  1DIY A;  2IKC A;  3KK6 A;  3GC1 A;  3UBA A;  4RRZ A;  1CVU A;  4PH9 A;  2EFB A;  3SXV A;  3GCK A;  1EBV A;  3I6N A;  3HS5 A;  4KVK A;  4N7A A;  3R5Q A;  1MYP C;  4KVJ A;  3N8X A;  3S4F A;  4Y55 A;  5JVY A;  1DNW C;  3MDL A;  3GCJ A;  3N8F A;  3FAQ A;  3N8W B;  4KSZ A;  3R55 A;  3R4X A;  3ZS0 C;  4QJQ A;  3R5O A;  1HT5 A;  3RKE A;  2AYL A;  3V6Q A;  5IKT A;  5IKR A;  1DNU C;  4RRW A;  5B72 A;  3Q9K A;  4NT3 A;  3OLT A;  4Z0L A;  2GJM A;  3TZI A;  3GCL A;  4RRY A;  3MQE A;  1IGZ A;  4OTY A;  4FM5 A;  4HHS A;  5GH0 A;  2R5L A;  3HS7 A;  5FDQ A;  2NQX A;  3TGY A;  1Q4G A;  4PNX A;  2OJV A;  1MHL C;  2QPK A;  3NT1 A;  3RR3 A;  6COX A;  4GN6 A;  4KVL A;  3ERH A;  4QYQ A;  5F19 A;  3Q7D A;  5IKQ A;  3NYH A;  1FE2 A;  3KRK A;  3PGH A;  2E9E A;  1EQH A;  2OYU P;  3N8Y A;  1PRH A;  4RUT A;  1HT8 A;  2QRB A;  3KRQ A;  4IG5 A;  1D2V C;  3LN0 A;  3NAK A;  3PY4 A;  3N8V A;  4RS0 A;  1D5L C;  4HHR A;  3N8Z A;  1EQG A;  1PTH A;  3NTB A;  3OLU A;  2QQT A;  1PXX A;  4M10 A;  5HPW A;  3NTG A;  1CQE A;  2PT3 A;  3LN1 A;  4GM7 A;  4O1Z A;  4OEK A;  5FIW C;  1IGX A;  5FF1 A;  3QH0 A;  4E1G A;  1PGE A;  2PUM A;  3FNL A;  1CX2 A;  3ZS1 C;  5JW1 A;  4LJJ A;  4DL1 C;  3BXI A;  3QF1 A;  3N8Y B;  3HS6 A;  4OTJ A;  5GLS A;  3ERI A;  5F1A A;  3QL6 A;  2Z5Z A;  1DDX A;  2OYE P;  3F9P C;  3N8W A;  1D7W C;  5COX A;  5JVZ A;  5KIR A;  4NJB A;  3NIU A;  5IKV A;  4C1M C;  2EHA A;  1U67 A;  3QMO A;  2IPS A;  4COX A;  4M11 A; 
#chains in the Genus database with same CATH homology
 2O86 A;  3OGW A;  1CXP C;  4RRX A;  4MSF A;  1DIY A;  2IKC A;  3KK6 A;  3GC1 A;  3UBA A;  4RRZ A;  1CVU A;  4PH9 A;  2EFB A;  3SXV A;  3GCK A;  1EBV A;  3I6N A;  3HS5 A;  4KVK A;  4N7A A;  3R5Q A;  1MYP C;  4KVJ A;  3N8X A;  3S4F A;  4Y55 A;  5JVY A;  1DNW C;  3MDL A;  3GCJ A;  3N8F A;  3FAQ A;  3N8W B;  4KSZ A;  3R55 A;  3R4X A;  3ZS0 C;  4QJQ A;  3R5O A;  1HT5 A;  3RKE A;  2AYL A;  3V6Q A;  5IKT A;  5IKR A;  1DNU C;  4RRW A;  5B72 A;  3Q9K A;  4NT3 A;  3OLT A;  4Z0L A;  2GJM A;  3TZI A;  3GCL A;  4RRY A;  3MQE A;  1IGZ A;  4OTY A;  4FM5 A;  4HHS A;  5GH0 A;  2R5L A;  3HS7 A;  5FDQ A;  2NQX A;  3TGY A;  1Q4G A;  4PNX A;  2OJV A;  1MHL C;  2QPK A;  3NT1 A;  3RR3 A;  6COX A;  4GN6 A;  4KVL A;  3ERH A;  4QYQ A;  5F19 A;  3Q7D A;  5IKQ A;  3NYH A;  1FE2 A;  3KRK A;  3PGH A;  2E9E A;  1EQH A;  2OYU P;  3N8Y A;  1PRH A;  4RUT A;  1HT8 A;  2QRB A;  3KRQ A;  4IG5 A;  1D2V C;  3LN0 A;  3NAK A;  3PY4 A;  3N8V A;  4RS0 A;  1D5L C;  4HHR A;  3N8Z A;  1EQG A;  1PTH A;  3NTB A;  3OLU A;  2QQT A;  1PXX A;  4M10 A;  5HPW A;  3NTG A;  1CQE A;  2PT3 A;  3LN1 A;  4GM7 A;  4O1Z A;  4OEK A;  5FIW C;  1IGX A;  5FF1 A;  3QH0 A;  4E1G A;  1PGE A;  2PUM A;  3FNL A;  1CX2 A;  3ZS1 C;  5JW1 A;  4LJJ A;  4DL1 C;  3BXI A;  3QF1 A;  3N8Y B;  3HS6 A;  4OTJ A;  5GLS A;  3ERI A;  5F1A A;  3QL6 A;  2Z5Z A;  1DDX A;  2OYE P;  3F9P C;  3N8W A;  1D7W C;  5COX A;  5JVZ A;  5KIR A;  4NJB A;  3NIU A;  5IKV A;  4C1M C;  2EHA A;  1U67 A;  3QMO A;  2IPS A;  4COX A;  4M11 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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