5GRRA

Crystal structure of mcr-1
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
Knots found
sequence length
323
structure length
323
Chain Sequence
TIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSTAYSVPCMFSYLGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDDFVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPVCEGNELAKCEHQSLINAYDNALLATDDFIAQSIQWLQTHSNAYDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKDRTAFIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable phosphatidylethanolamine transferase Mcr-1
publication title High resolution crystal structure of the catalytic domain of MCR-1
pubmed doi rcsb
source organism Escherichia coli
total genus 128
structure length 323
sequence length 323
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.-.-:
pdb deposition date 2016-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 5grrA00
3A52A 2GSNA 4ZG9A 2W5RA 1ANJA 4GTYA 1O99A 5DLWA 1ED8A 2IUCA 5IJSA 1B8JA 4KJGA 2GSUA 5K4PA 1E2SP 1KHNA 2QZUA 2W5WA 3BDFA 2IFYA 2W5XA 1ALIA 3SZZA 2GSOA 1ED9A 1HQAA 3WAVA 1EW9A 3E2DA 1KH5A 1EI6A 1E1ZP 1Y6VA 1EW2A 4GTZA 1P49A 3CMRA 3MK2A 4LR2A 1URAA 3BDGA 5L0KA 3IGYB 3ED4A 4FDJA 3MK1A 1AJBA 4LQYA 2W5SA 5IJQA 3M8YA 2G9YA 3NKOA 4LRCA 2W5QA 1AUKA 4LRBA 1ALHA 1ZEFA 4TN0A 4LR7A 3LXQA 2W8DA 1ELXA 2GA3A 3DPCA 1KH7A 4KAYA 3KD8A 3NVLA 4KJDA 1ELZA 3SZYA 5LRMA 5INHA 4NWXA 4UORA 1KH4A 5EGEA 1KHKA 2GLQA 4ZG7A 4N7TA 1KHLA 3TG0A 3T00A 1Y7AA 2XRGA 3WAWA 1EJJA 2W5VA 5TJ3A 5LQQA 4YR1A 4LRAA 1O98A 5AJ9A 3UO0A 4CXUA 4ZGAA 3MK0A 3BDHA 3BDGB 1ZEBA 4CYRA 1E33P 2ANHA 3NKRA 5HRTA 3M8ZA 3IDDA 3T01A 2VQRA 3NKNA 3OT9A 1KH9A 1HDHA 3UNYA 3DYCA 1ELYA 1ALKA 1HJKA 1EW8A 4LREA 5GOVA 1URBA 4MHXA 4UPKA 4ZG6A 3UN3A 1E3CP 1ANIA 2IUCB 4KAVA 5LIAA 4UPHA 5KXAA 5C66A 3UN5A 5L0BA 5L0EA 4CXKA 4UOOA 1SHNA 5DLVA 1EQJA 2XR9A 4MIVA 4UOPA 3Q3QA 1ZEDA 3TX0A 4QAXA 3T02A 4LRFA 3M8WA 4LR8A 4GTWA 1KHJA 1FSUA 1AJCA 2ZKTA 4UPIA 4KM4A 4UPLA 1N2KA 3B5QA 4LRDA 3NKQA 3NKMA 5EGHA 3WAXA 1K7HA 3TWZA 3WAYA 1N2LA 1SHQA 2X98A 4MY4A 3IGZB 5LRNA 4B56A 3NKPA 4LR9A 4CXSA 1AJDA 4GTXA 2W8SA 3WBHA 1ALJA 3M7VA 2W5TA 5DLTA 4FDIA 5GRRA 4NWJA 1AJAA 3UN2A 2RH6A 4CYSA 2D1GA
chains in the Genus database with same CATH superfamily
3A52A 2GSNA 4ZG9A 2W5RA 1ANJA 4GTYA 1O99A 5DLWA 1ED8A 2IUCA 5IJSA 1B8JA 4KJGA 2GSUA 5K4PA 1E2SP 1KHNA 2QZUA 2W5WA 3BDFA 2IFYA 2W5XA 1ALIA 3SZZA 2GSOA 1ED9A 1HQAA 3WAVA 1EW9A 3E2DA 1KH5A 1EI6A 1E1ZP 1Y6VA 1EW2A 4GTZA 1P49A 3CMRA 3MK2A 4LR2A 1URAA 3BDGA 5L0KA 3IGYB 3ED4A 4FDJA 3MK1A 1AJBA 4LQYA 2W5SA 5IJQA 3M8YA 2G9YA 3NKOA 4LRCA 2W5QA 1AUKA 4LRBA 1ALHA 1ZEFA 4TN0A 4LR7A 3LXQA 2W8DA 1ELXA 2GA3A 3DPCA 1KH7A 4KAYA 3KD8A 3NVLA 4KJDA 1ELZA 3SZYA 5LRMA 5INHA 4NWXA 4UORA 1KH4A 5EGEA 1KHKA 2GLQA 4ZG7A 4N7TA 1KHLA 3TG0A 3T00A 1Y7AA 2XRGA 3WAWA 1EJJA 2W5VA 5TJ3A 5LQQA 4YR1A 4LRAA 1O98A 5AJ9A 3UO0A 4CXUA 4ZGAA 3MK0A 3BDHA 3BDGB 1ZEBA 4CYRA 1E33P 2ANHA 3NKRA 5HRTA 3M8ZA 3IDDA 3T01A 2VQRA 3NKNA 3OT9A 1KH9A 1HDHA 3UNYA 3DYCA 1ELYA 1ALKA 1HJKA 1EW8A 4LREA 5GOVA 1URBA 4MHXA 4UPKA 4ZG6A 3UN3A 1E3CP 1ANIA 2IUCB 4KAVA 5LIAA 4UPHA 5KXAA 5C66A 3UN5A 5L0BA 5L0EA 4CXKA 4UOOA 1SHNA 5DLVA 1EQJA 2XR9A 4MIVA 4UOPA 3Q3QA 1ZEDA 3TX0A 4QAXA 3T02A 4LRFA 3M8WA 4LR8A 4GTWA 1KHJA 1FSUA 1AJCA 2ZKTA 4UPIA 4KM4A 4UPLA 1N2KA 3B5QA 4LRDA 3NKQA 3NKMA 5EGHA 3WAXA 1K7HA 3TWZA 3WAYA 1N2LA 1SHQA 2X98A 4MY4A 3IGZB 5LRNA 4B56A 3NKPA 4LR9A 4CXSA 1AJDA 4GTXA 2W8SA 3WBHA 1ALJA 3M7VA 2W5TA 5DLTA 4FDIA 5GRRA 4NWJA 1AJAA 3UN2A 2RH6A 4CYSA 2D1GA
chains in the Genus database with same CATH topology
3A52A 2GSNA 4ZG9A 2W5RA 1ANJA 4GTYA 1O99A 5DLWA 1ED8A 2IUCA 5IJSA 1B8JA 4KJGA 2GSUA 5K4PA 1E2SP 1KHNA 2QZUA 2W5WA 3BDFA 2IFYA 2W5XA 1ALIA 3SZZA 2GSOA 1ED9A 1HQAA 3WAVA 1EW9A 3E2DA 1KH5A 1EI6A 1E1ZP 1Y6VA 1EW2A 4GTZA 1P49A 3CMRA 3MK2A 4LR2A 1URAA 3BDGA 5L0KA 3IGYB 3ED4A 4FDJA 3MK1A 1AJBA 4LQYA 2W5SA 5IJQA 3M8YA 2G9YA 3NKOA 4LRCA 2W5QA 1AUKA 4LRBA 1ALHA 1ZEFA 4TN0A 4LR7A 3LXQA 2W8DA 1ELXA 2GA3A 3DPCA 1KH7A 4KAYA 3KD8A 3NVLA 4KJDA 1ELZA 3SZYA 5LRMA 5INHA 4NWXA 4UORA 1KH4A 5EGEA 1KHKA 2GLQA 4ZG7A 4N7TA 1KHLA 3TG0A 3T00A 1Y7AA 2XRGA 3WAWA 1EJJA 2W5VA 5TJ3A 5LQQA 4YR1A 4LRAA 1O98A 5AJ9A 3UO0A 4CXUA 4ZGAA 3MK0A 3BDHA 3BDGB 1ZEBA 4CYRA 1E33P 2ANHA 3NKRA 5HRTA 3M8ZA 3IDDA 3T01A 2VQRA 3NKNA 3OT9A 1KH9A 1HDHA 3UNYA 3DYCA 1ELYA 1ALKA 1HJKA 1EW8A 4LREA 5GOVA 1URBA 4MHXA 4UPKA 4ZG6A 3UN3A 1E3CP 1ANIA 2IUCB 4KAVA 5LIAA 4UPHA 5KXAA 5C66A 3UN5A 5L0BA 5L0EA 4CXKA 4UOOA 1SHNA 5DLVA 1EQJA 2XR9A 4MIVA 4UOPA 3Q3QA 1ZEDA 3TX0A 4QAXA 3T02A 4LRFA 3M8WA 4LR8A 4GTWA 1KHJA 1FSUA 1AJCA 2ZKTA 4UPIA 4KM4A 4UPLA 1N2KA 3B5QA 4LRDA 3NKQA 3NKMA 5EGHA 3WAXA 1K7HA 3TWZA 3WAYA 1N2LA 1SHQA 2X98A 4MY4A 3IGZB 5LRNA 4B56A 3NKPA 4LR9A 4CXSA 1AJDA 4GTXA 2W8SA 3WBHA 1ALJA 3M7VA 2W5TA 5DLTA 4FDIA 5GRRA 4NWJA 1AJAA 3UN2A 2RH6A 4CYSA 2D1GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A52 A;  2GSN A;  4ZG9 A;  2W5R A;  1ANJ A;  4GTY A;  1O99 A;  5DLW A;  1ED8 A;  2IUC A;  5IJS A;  1B8J A;  4KJG A;  2GSU A;  5K4P A;  1E2S P;  1KHN A;  2QZU A;  2W5W A;  3BDF A;  2IFY A;  2W5X A;  1ALI A;  3SZZ A;  2GSO A;  1ED9 A;  1HQA A;  3WAV A;  1EW9 A;  3E2D A;  1KH5 A;  1EI6 A;  1E1Z P;  1Y6V A;  1EW2 A;  4GTZ A;  1P49 A;  3CMR A;  3MK2 A;  4LR2 A;  1URA A;  3BDG A;  5L0K A;  3IGY B;  3ED4 A;  4FDJ A;  3MK1 A;  1AJB A;  4LQY A;  2W5S A;  5IJQ A;  3M8Y A;  2G9Y A;  3NKO A;  4LRC A;  2W5Q A;  1AUK A;  4LRB A;  1ALH A;  1ZEF A;  4TN0 A;  4LR7 A;  3LXQ A;  2W8D A;  1ELX A;  2GA3 A;  3DPC A;  1KH7 A;  4KAY A;  3KD8 A;  3NVL A;  4KJD A;  1ELZ A;  3SZY A;  5LRM A;  5INH A;  4NWX A;  4UOR A;  1KH4 A;  5EGE A;  1KHK A;  2GLQ A;  4ZG7 A;  4N7T A;  1KHL A;  3TG0 A;  3T00 A;  1Y7A A;  2XRG A;  3WAW A;  1EJJ A;  2W5V A;  5TJ3 A;  5LQQ A;  4YR1 A;  4LRA A;  1O98 A;  5AJ9 A;  3UO0 A;  4CXU A;  4ZGA A;  3MK0 A;  3BDH A;  3BDG B;  1ZEB A;  4CYR A;  1E33 P;  2ANH A;  3NKR A;  5HRT A;  3M8Z A;  3IDD A;  3T01 A;  2VQR A;  3NKN A;  3OT9 A;  1KH9 A;  1HDH A;  3UNY A;  3DYC A;  1ELY A;  1ALK A;  1HJK A;  1EW8 A;  4LRE A;  5GOV A;  1URB A;  4MHX A;  4UPK A;  4ZG6 A;  3UN3 A;  1E3C P;  1ANI A;  2IUC B;  4KAV A;  5LIA A;  4UPH A;  5KXA A;  5C66 A;  3UN5 A;  5L0B A;  5L0E A;  4CXK A;  4UOO A;  1SHN A;  5DLV A;  1EQJ A;  2XR9 A;  4MIV A;  4UOP A;  3Q3Q A;  1ZED A;  3TX0 A;  4QAX A;  3T02 A;  4LRF A;  3M8W A;  4LR8 A;  4GTW A;  1KHJ A;  1FSU A;  1AJC A;  2ZKT A;  4UPI A;  4KM4 A;  4UPL A;  1N2K A;  3B5Q A;  4LRD A;  3NKQ A;  3NKM A;  5EGH A;  3WAX A;  1K7H A;  3TWZ A;  3WAY A;  1N2L A;  1SHQ A;  2X98 A;  4MY4 A;  3IGZ B;  5LRN A;  4B56 A;  3NKP A;  4LR9 A;  4CXS A;  1AJD A;  4GTX A;  2W8S A;  3WBH A;  1ALJ A;  3M7V A;  2W5T A;  5DLT A;  4FDI A;  5GRR A;  4NWJ A;  1AJA A;  3UN2 A;  2RH6 A;  4CYS A;  2D1G A; 
#chains in the Genus database with same CATH topology
 3A52 A;  2GSN A;  4ZG9 A;  2W5R A;  1ANJ A;  4GTY A;  1O99 A;  5DLW A;  1ED8 A;  2IUC A;  5IJS A;  1B8J A;  4KJG A;  2GSU A;  5K4P A;  1E2S P;  1KHN A;  2QZU A;  2W5W A;  3BDF A;  2IFY A;  2W5X A;  1ALI A;  3SZZ A;  2GSO A;  1ED9 A;  1HQA A;  3WAV A;  1EW9 A;  3E2D A;  1KH5 A;  1EI6 A;  1E1Z P;  1Y6V A;  1EW2 A;  4GTZ A;  1P49 A;  3CMR A;  3MK2 A;  4LR2 A;  1URA A;  3BDG A;  5L0K A;  3IGY B;  3ED4 A;  4FDJ A;  3MK1 A;  1AJB A;  4LQY A;  2W5S A;  5IJQ A;  3M8Y A;  2G9Y A;  3NKO A;  4LRC A;  2W5Q A;  1AUK A;  4LRB A;  1ALH A;  1ZEF A;  4TN0 A;  4LR7 A;  3LXQ A;  2W8D A;  1ELX A;  2GA3 A;  3DPC A;  1KH7 A;  4KAY A;  3KD8 A;  3NVL A;  4KJD A;  1ELZ A;  3SZY A;  5LRM A;  5INH A;  4NWX A;  4UOR A;  1KH4 A;  5EGE A;  1KHK A;  2GLQ A;  4ZG7 A;  4N7T A;  1KHL A;  3TG0 A;  3T00 A;  1Y7A A;  2XRG A;  3WAW A;  1EJJ A;  2W5V A;  5TJ3 A;  5LQQ A;  4YR1 A;  4LRA A;  1O98 A;  5AJ9 A;  3UO0 A;  4CXU A;  4ZGA A;  3MK0 A;  3BDH A;  3BDG B;  1ZEB A;  4CYR A;  1E33 P;  2ANH A;  3NKR A;  5HRT A;  3M8Z A;  3IDD A;  3T01 A;  2VQR A;  3NKN A;  3OT9 A;  1KH9 A;  1HDH A;  3UNY A;  3DYC A;  1ELY A;  1ALK A;  1HJK A;  1EW8 A;  4LRE A;  5GOV A;  1URB A;  4MHX A;  4UPK A;  4ZG6 A;  3UN3 A;  1E3C P;  1ANI A;  2IUC B;  4KAV A;  5LIA A;  4UPH A;  5KXA A;  5C66 A;  3UN5 A;  5L0B A;  5L0E A;  4CXK A;  4UOO A;  1SHN A;  5DLV A;  1EQJ A;  2XR9 A;  4MIV A;  4UOP A;  3Q3Q A;  1ZED A;  3TX0 A;  4QAX A;  3T02 A;  4LRF A;  3M8W A;  4LR8 A;  4GTW A;  1KHJ A;  1FSU A;  1AJC A;  2ZKT A;  4UPI A;  4KM4 A;  4UPL A;  1N2K A;  3B5Q A;  4LRD A;  3NKQ A;  3NKM A;  5EGH A;  3WAX A;  1K7H A;  3TWZ A;  3WAY A;  1N2L A;  1SHQ A;  2X98 A;  4MY4 A;  3IGZ B;  5LRN A;  4B56 A;  3NKP A;  4LR9 A;  4CXS A;  1AJD A;  4GTX A;  2W8S A;  3WBH A;  1ALJ A;  3M7V A;  2W5T A;  5DLT A;  4FDI A;  5GRR A;  4NWJ A;  1AJA A;  3UN2 A;  2RH6 A;  4CYS A;  2D1G A; 
#chains in the Genus database with same CATH homology
 3A52 A;  2GSN A;  4ZG9 A;  2W5R A;  1ANJ A;  4GTY A;  1O99 A;  5DLW A;  1ED8 A;  2IUC A;  5IJS A;  1B8J A;  4KJG A;  2GSU A;  5K4P A;  1E2S P;  1KHN A;  2QZU A;  2W5W A;  3BDF A;  2IFY A;  2W5X A;  1ALI A;  3SZZ A;  2GSO A;  1ED9 A;  1HQA A;  3WAV A;  1EW9 A;  3E2D A;  1KH5 A;  1EI6 A;  1E1Z P;  1Y6V A;  1EW2 A;  4GTZ A;  1P49 A;  3CMR A;  3MK2 A;  4LR2 A;  1URA A;  3BDG A;  5L0K A;  3IGY B;  3ED4 A;  4FDJ A;  3MK1 A;  1AJB A;  4LQY A;  2W5S A;  5IJQ A;  3M8Y A;  2G9Y A;  3NKO A;  4LRC A;  2W5Q A;  1AUK A;  4LRB A;  1ALH A;  1ZEF A;  4TN0 A;  4LR7 A;  3LXQ A;  2W8D A;  1ELX A;  2GA3 A;  3DPC A;  1KH7 A;  4KAY A;  3KD8 A;  3NVL A;  4KJD A;  1ELZ A;  3SZY A;  5LRM A;  5INH A;  4NWX A;  4UOR A;  1KH4 A;  5EGE A;  1KHK A;  2GLQ A;  4ZG7 A;  4N7T A;  1KHL A;  3TG0 A;  3T00 A;  1Y7A A;  2XRG A;  3WAW A;  1EJJ A;  2W5V A;  5TJ3 A;  5LQQ A;  4YR1 A;  4LRA A;  1O98 A;  5AJ9 A;  3UO0 A;  4CXU A;  4ZGA A;  3MK0 A;  3BDH A;  3BDG B;  1ZEB A;  4CYR A;  1E33 P;  2ANH A;  3NKR A;  5HRT A;  3M8Z A;  3IDD A;  3T01 A;  2VQR A;  3NKN A;  3OT9 A;  1KH9 A;  1HDH A;  3UNY A;  3DYC A;  1ELY A;  1ALK A;  1HJK A;  1EW8 A;  4LRE A;  5GOV A;  1URB A;  4MHX A;  4UPK A;  4ZG6 A;  3UN3 A;  1E3C P;  1ANI A;  2IUC B;  4KAV A;  5LIA A;  4UPH A;  5KXA A;  5C66 A;  3UN5 A;  5L0B A;  5L0E A;  4CXK A;  4UOO A;  1SHN A;  5DLV A;  1EQJ A;  2XR9 A;  4MIV A;  4UOP A;  3Q3Q A;  1ZED A;  3TX0 A;  4QAX A;  3T02 A;  4LRF A;  3M8W A;  4LR8 A;  4GTW A;  1KHJ A;  1FSU A;  1AJC A;  2ZKT A;  4UPI A;  4KM4 A;  4UPL A;  1N2K A;  3B5Q A;  4LRD A;  3NKQ A;  3NKM A;  5EGH A;  3WAX A;  1K7H A;  3TWZ A;  3WAY A;  1N2L A;  1SHQ A;  2X98 A;  4MY4 A;  3IGZ B;  5LRN A;  4B56 A;  3NKP A;  4LR9 A;  4CXS A;  1AJD A;  4GTX A;  2W8S A;  3WBH A;  1ALJ A;  3M7V A;  2W5T A;  5DLT A;  4FDI A;  5GRR A;  4NWJ A;  1AJA A;  3UN2 A;  2RH6 A;  4CYS A;  2D1G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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