The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
79
|
sequence length |
310
|
structure length |
310
|
Chain Sequence |
STPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Synthesis of seleno-fucose compounds and their application to the X-ray structural determination of carbohydrate-lectin complexes using single/multi-wavelength anomalous dispersion phasing
pubmed doi rcsb |
| molecule tags |
Sugar binding protein
|
| source organism |
Aspergillus oryzae rib40
|
| molecule keywords |
Uncharacterized protein
|
| total genus |
79
|
| structure length |
310
|
| sequence length |
310
|
| chains with identical sequence |
B, C, D, E, F, G, H, I, J, K, L
|
| ec nomenclature | |
| pdb deposition date | 2016-10-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07938 | Fungal_lectin | Fungal fucose-specific lectin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 6 Propeller | Neuraminidase | Fucose-specific lectin |
#chains in the Genus database with same CATH superfamily 4AGI A; 5EO8 A; 4AH4 A; 4C1Y B; 1OFZ A; 5EO7 A; 4C1Y A; 4CSD A; 4D4U A; 4UOU A; 4D52 B; 5H47 A; 1IUC A; 1IUB A; 4D52 C; 4D52 A; 4AHA A; 4AGT A; #chains in the Genus database with same CATH topology 4IN4 A; 3TI5 A; 2VK6 A; 1MS3 A; 3VNH A; 1EUU A; 3FVZ A; 1MWE A; 4FPE A; 3SAL A; 3NSS A; 1MS5 A; 1VCJ A; 4YZ2 A; 1Z4Z A; 4MWY A; 4UF7 A; 3DR2 A; 1N6D A; 2QWH A; 3S8Z A; 4FOW A; 1CRU A; 2QWF A; 1U6D X; 1USR A; 1DIL A; 2XZJ A; 1N1S A; 4HZW A; 1IVD A; 4L7C A; 4YW5 A; 1EUT A; 3ZGC A; 5CGJ A; 1XOG A; 1MS0 A; 2V91 A; 4GJT A; 4DGR A; 1NMC A; 4QN5 A; 3TIB A; 4D52 B; 4XJU A; 3Q6P A; 4GEZ A; 3CL0 A; 4FPJ A; 3SOV A; 1KIT A; 1NSD A; 2YA4 A; 3O9J A; 5HUG A; 2P4O A; 2QWD A; 4O5T A; 2VVZ A; 2YA6 A; 3A71 A; 4AGI A; 5F9T A; 1S18 A; 2IAS A; 2YA5 A; 4XIL A; 1ING A; 4D8S A; 3NN9 A; 2VW1 A; 3INB A; 2H2N A; 1F8D A; 1K32 A; 4IFL X; 3O9K A; 2QWI A; 4HHQ A; 4WEF A; 2FHR A; 1WCS A; 4GZX A; 3LI3 A; 2HT5 A; 4GN9 A; 3V1S A; 1CQ1 A; 1S0I A; 2VK5 A; 3IAX A; 1N1T A; 4MJU A; 2IAW A; 3UC1 A; 3TIA A; 1NNB A; 4XJR A; 2BER A; 4FPL A; 4XIO A; 2JKB A; 1N6F A; 1V0Z A; 2SIL A; 4ASC A; 2BZD A; 1SLL A; 4HZX A; 2GVV A; 3D12 A; 2POO A; 4IMB A; 4GZT A; 1Z4W A; 4HZY A; 3TI6 A; 1OFZ A; 3A72 A; 5NN9 A; 2VW2 A; 2GHS A; 4XIK A; 7NN9 A; 2VW0 A; 3ALX A; 4FPK A; 4XHX A; 2AEP A; 2FLU X; 3E5Z A; 1X2R A; 4K1J A; 1W20 A; 4AH4 A; 3DAS A; 5JYY A; 4KS4 A; 1N1Y A; 2HQS A; 4NCS A; 2VSK A; 4MC7 A; 2W20 A; 4MJV A; 1RWI A; 3TI3 A; 1SLI A; 1MS4 A; 1V3B A; 1IVF A; 2W8B A; 3O4P A; 1V3D A; 4O5S A; 4CH9 A; 1W1X A; 1WP5 A; 1NSC A; 4XMB A; 4XOG A; 2GVU A; 4IFJ A; 1N6E A; 1NNA A; 2IVZ A; 2SIM A; 2W8B B; 2AGS A; 5HX0 A; 5B2D A; 4CPN A; 3L6V A; 1B9T A; 4X49 A; 1F8C A; 1L7F A; 1MS1 A; 5EO8 A; 4B7J A; 4XYX A; 2BF6 A; 2QWC A; 2ZB6 A; 4MWL A; 1E8T A; 2VK7 A; 2DYH A; 2F24 A; 2YDP A; 5D9B A; 3T1E A; 3ADE A; 1ZGK A; 1E8U A; 5FNU A; 4J9T A; 3OPZ A; 2GVW A; 4ZGC A; 4QN7 A; 3H6J A; 4GZW A; 4GZP A; 4QNP A; 3AMS A; 4B7R A; 4D52 A; 2XCY A; 1INY A; 3AMR A; 5HUK A; 1V3C A; 1Z4Y A; 4D52 C; 1V0F A; 4FPY A; 1IVE A; 4QN3 A; 2QWB A; 4M4V A; 2CML A; 4YW1 A; 4CHB A; 1NN2 A; 4GDI A; 3TI4 A; 4YZ3 A; 4ZLR A; 1E8V A; 4GN8 A; 4PWZ A; 1IJQ A; 2IAV A; 4KS5 A; 1USX A; 4IYG A; 2FP9 A; 2G8S A; 1V0E A; 2GVX A; 3S2K A; 4CPO A; 2HTQ A; 4GDJ A; 4XMI A; 5GX1 A; 4K1K A; 3WWA A; 4YZ4 A; 3TI8 A; 4IFN X; 4FP3 A; 4GN7 A; 1NCB N; 4JF7 A; 5D9C A; 3ZGD A; 4FPF A; 4GNA A; 4MZE A; 2RKC A; 4QN4 A; 2W5N A; 1RWL A; 2IAO A; 2ZWA A; 1CRZ A; 1POO A; 2HTW A; 1EUS A; 4KS3 A; 4M4U A; 4MWX A; 1NCA N; 4GNB A; 4MWV A; 4XE9 A; 3GVK A; 4XJQ A; 4FVK A; 4H52 A; 3TIC A; 1A4Q A; 1W21 A; 4XJ8 A; 4H53 A; 1X2J A; 1INF A; 4FPC A; 4ZY3 A; 1A4G A; 1ZI0 A; 3D11 A; 5GX4 A; 2WOZ A; 5B2C A; 1F8E A; 1MS9 A; 1NCD N; 4YW3 A; 5HUM A; 5GX2 A; 2AH2 A; 2IAX A; 3H72 A; 3I1C A; 4FZH A; 1INW A; 4KS1 A; 3WW9 A; 2F0Z A; 4CPM A; 4AHA A; 4XJA A; 1Z50 A; 4GNC A; 2HU0 A; 2H2U A; 4HZZ A; 4K3Y A; 4C1Y A; 4CSD A; 2AEQ A; 1INX A; 2IAR A; 3LI4 A; 2FPB A; 2DG1 A; 4B7Q A; 1INH A; 3KGG A; 3W09 A; 5FNS A; 2HT7 A; 1Q7F A; 1IUC A; 3G4H A; 2C4L A; 3KYA A; 3V65 B; 3U0S A; 4CPY A; 4C1Y B; 4KS2 A; 1NNC A; 3HRP A; 2F25 A; 1INV A; 1MZ6 A; 2F28 A; 3GVJ A; 4MWQ A; 2DSO A; 3BEQ A; 4XJW A; 1H6L A; 4XMA A; 3B7E A; 1IVB A; 2FP8 A; 3LI5 A; 2YA8 A; 3CL2 A; 1B9S A; 2QWG A; 2W5O A; 2XZI A; 1W0O A; 5FZN A; 4SLI A; 4MWW A; 2QWK A; 4X47 A; 1IVG A; 2F29 A; 3SOB B; 4UOU A; 3K3A A; 3H71 A; 4CPZ A; 1PJX A; 4GZO A; 4FOQ A; 4R40 A; 2VWD A; 4JML A; 3SLI A; 3FW0 A; 3SOQ A; 2A75 A; 5GX5 A; 2VSM A; 4CPL A; 4XJZ A; 4I00 A; 1QBI A; 3WDZ A; 2F11 A; 5FWW A; 1CVM A; 2VPJ A; 1C9U A; 4WA3 A; 1NMB N; 2QWJ A; 3ALW A; 5FNT A; 3NO0 A; 3Q6T A; 3S94 A; 4WEG A; 4D4U A; 5GX3 A; 5F72 C; 4YW2 A; 4FQ4 A; 3V64 C; 1NSB A; 3H73 A; 1NMA N; 2IAT A; 3Q6K A; 4WA4 A; 4MWU A; 2YDT A; 1Z4X A; 4G3N A; 3K37 A; 2XN4 A; 3II7 A; 1C5K A; 3TC9 A; 5HUN A; 2QWE A; 5FZJ A; 4M3M A; 4NC5 A; 4L7B A; 4N1B A; 6NN9 A; 2BAT A; 1BJI A; 1NPE A; 1QLG A; 4FOY A; 2SLI A; 4K1I A; 1F8B A; 3P5B L; 3SIL A; 2ZB5 A; 1EUR A; 2C4A A; 3SRE A; 5EX7 A; 2XZK A; 1SNT A; 2HTY A; 5GTQ A; 2HTU A; 3G4E A; 2OJH A; 4XJ9 A; 4DG6 A; 1W8N A; 2F27 A; 1MS8 A; 4GB1 A; 3SAN A; 1WCQ A; 3HLH A; 4FOV A; 3B69 A; 1S0J A; 4A0P A; 4YZ1 A; 3CYE A; 4GZS A; 4MX0 A; 5FNQ A; 5FNR A; 3WN7 A; 1B9V A; 2QWA A; 1V2I A; 4QN6 A; 4FPO B; 4IQK A; 4FPG A; 3PJQ A; 2YA7 A; 2ISM A; 1S1D A; 2QE8 A; 4YZ5 A; 4B7N A; 3K36 A; 4MWR A; 1Z4V A; 1IUB A; 3CKZ A; 3A9G A; 1V3E A; 3BYC A; 3S8V A; 1XOE A; 4K1H A; 1N7D A; 4L7D A; 1L7H A; 4XHB A; 1IVC A; 1SO7 A; 1V04 A; 4X4A A; 2HTV A; 1W0P A; 4YW4 A; 1N1V A; 1W8O A; 1MR5 A; 5H47 A; 4MWJ A; 4BBW A; 2IAP A; 2X9M A; 4Q6K A; 2FPC A; 3HLI A; 3K38 A; 4FP2 A; 2F13 A; 1A14 N; 2HT8 A; 2F26 A; 4GZQ A; 2DG0 A; 2Z32 A; 1L7G A; 2B8H A; 2ZW9 A; 3GVL A; 4HZV A; 2IAQ A; 4MZA A; 4YY8 A; 4FPH A; 2W38 A; 4HIZ A; 1E1A A; 4NN9 A; 5EO7 A; 2F12 A; 4X6K A; 4M4N A; 1DIM A; 3A9H A; 4HHO A; 5D9D A; 3SRG A; 2HU4 A; 4B7M A; 1VCU A; 5M1Z A; 2IAU A; 4WA5 A; 1MZ5 A; 2VAQ A; 2ZZK A; 3JU4 A; 3VNG A; 3K39 A; 4AGT A; 1NCC N; 4Q1U A; 4FJ6 A; 1SUU A; 2HTR A; 2F10 A; 4HW6 A; #chains in the Genus database with same CATH homology 4AGI A; 5EO8 A; 4AH4 A; 4C1Y B; 1OFZ A; 5EO7 A; 4C1Y A; 4CSD A; 4D4U A; 4UOU A; 4D52 B; 5H47 A; 1IUC A; 1IUB A; 4D52 C; 4D52 A; 4AHA A; 4AGT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
