5HNMA

Crystal structure of vancomycin resistance d,d-pentapeptidase vany e175a mutant from vanb-type resistance cassette in complex with zn(ii)
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
179
structure length
179
Chain Sequence
EWSLILVNRQNPIPAQYDVELEQLSNGERIDIRISPYLQDLFDAARADGVYPIVASGYRTTEKQQEIMDEKVAEYKAKGYTSAQAKAAAETWVAVPGTSEHQLGLAVDINADGIHSTGNEVYRWLDENSYRFGFIRRYPPDKTEITGVSNEPWHYRYVGIEAATKIYHQGLCLEEYLNT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords D-alanyl-D-alanine carboxypeptidase
publication title To be published
rcsb
source organism Enterococcus faecalis (strain atcc 700802 / v583)
total genus 57
structure length 179
sequence length 179
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.4.16.4: Serine-type D-Ala-D-Ala carboxypeptidase.
pdb deposition date 2016-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02557 VanY D-alanyl-D-alanine carboxypeptidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Muramoyl-pentapeptide Carboxypeptidase; domain 2 5hnmA00
1LBUA 3N1QA 2IBGE 4C4NA 2WFXA 2WG4A 3M1NA 3N1PB 3K7HB 3HO5H 4OAKA 4MUTA 4MURA 4MUQA 1U10A 4MPHA 4NT9A 5HNMA 3K7JB 4F78A 2WG3A 4D0YA 2VO9A 4OXDA 2WFRA 4JIDA 4C4MA 3MXWA 1R44A 3D1MA 1TZPA 3N1MB 3K7GB 3N1OA 4OX5A 3N1FA 2WFQA 1VHHA 3N1RA 3N1GA 4OX3A 3K7IB 4MUSA
chains in the Genus database with same CATH superfamily
1SZ7A 2OSDA 1LBUA 2OSOA 3N1QA 2IBGE 4C4NA 2C0JA 2WFXA 2WG4A 3M1NA 2J3RB 3K7HB 3HO5H 3N1PB 4OAKA 1WC9A 3KXCC 4MUTA 4MURA 4MUQA 1U10A 2C0JB 4MPHA 4MUSA 4NT9A 5HNMA 3K7JB 4F78A 2BJNA 2WG3A 4D0YA 2VO9A 4OXDA 2WFRA 4JIDA 2J3TA 4C4MA 2CFHA 1R44A 3K7IB 3MXWA 3D1MA 1TZPA 2J3WB 3N1MB 3K7GB 3N1OA 4OX5A 2J3WD 2PWNA 2J3RA 2J3TB 2WFQA 1VHHA 3CUEB 3N1RA 3N1FA 3N1GA 4OX3A 3CUED 2CFHC 1WC8A 3KXCA 3NJCA
chains in the Genus database with same CATH topology
1LBUA 3N1QA 2IBGE 4C4NA 2WFXA 2WG4A 3M1NA 3N1PB 3K7HB 3HO5H 4OAKA 4MUTA 4MURA 4MUQA 1U10A 4MPHA 4NT9A 5HNMA 3K7JB 4F78A 2WG3A 4D0YA 2VO9A 4OXDA 2WFRA 4JIDA 4C4MA 3MXWA 1R44A 3D1MA 1TZPA 3N1MB 3K7GB 3N1OA 4OX5A 3N1FA 2WFQA 1VHHA 3N1RA 3N1GA 4OX3A 3K7IB 4MUSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LBU A;  3N1Q A;  2IBG E;  4C4N A;  2WFX A;  2WG4 A;  3M1N A;  3N1P B;  3K7H B;  3HO5 H;  4OAK A;  4MUT A;  4MUR A;  4MUQ A;  1U10 A;  4MPH A;  4NT9 A;  5HNM A;  3K7J B;  4F78 A;  2WG3 A;  4D0Y A;  2VO9 A;  4OXD A;  2WFR A;  4JID A;  4C4M A;  3MXW A;  1R44 A;  3D1M A;  1TZP A;  3N1M B;  3K7G B;  3N1O A;  4OX5 A;  3N1F A;  2WFQ A;  1VHH A;  3N1R A;  3N1G A;  4OX3 A;  3K7I B;  4MUS A; 
#chains in the Genus database with same CATH topology
 1SZ7 A;  2OSD A;  1LBU A;  2OSO A;  3N1Q A;  2IBG E;  4C4N A;  2C0J A;  2WFX A;  2WG4 A;  3M1N A;  2J3R B;  3K7H B;  3HO5 H;  3N1P B;  4OAK A;  1WC9 A;  3KXC C;  4MUT A;  4MUR A;  4MUQ A;  1U10 A;  2C0J B;  4MPH A;  4MUS A;  4NT9 A;  5HNM A;  3K7J B;  4F78 A;  2BJN A;  2WG3 A;  4D0Y A;  2VO9 A;  4OXD A;  2WFR A;  4JID A;  2J3T A;  4C4M A;  2CFH A;  1R44 A;  3K7I B;  3MXW A;  3D1M A;  1TZP A;  2J3W B;  3N1M B;  3K7G B;  3N1O A;  4OX5 A;  2J3W D;  2PWN A;  2J3R A;  2J3T B;  2WFQ A;  1VHH A;  3CUE B;  3N1R A;  3N1F A;  3N1G A;  4OX3 A;  3CUE D;  2CFH C;  1WC8 A;  3KXC A;  3NJC A; 
#chains in the Genus database with same CATH homology
 1LBU A;  3N1Q A;  2IBG E;  4C4N A;  2WFX A;  2WG4 A;  3M1N A;  3N1P B;  3K7H B;  3HO5 H;  4OAK A;  4MUT A;  4MUR A;  4MUQ A;  1U10 A;  4MPH A;  4NT9 A;  5HNM A;  3K7J B;  4F78 A;  2WG3 A;  4D0Y A;  2VO9 A;  4OXD A;  2WFR A;  4JID A;  4C4M A;  3MXW A;  1R44 A;  3D1M A;  1TZP A;  3N1M B;  3K7G B;  3N1O A;  4OX5 A;  3N1F A;  2WFQ A;  1VHH A;  3N1R A;  3N1G A;  4OX3 A;  3K7I B;  4MUS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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