5HOLA

The crystal structure of the mers-cov macro domain with adp-ribose
Total Genus 54
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
167
structure length
167
Chain Sequence
MDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Viral protein
molecule keywords ORF1a
publication title Nsp3 of coronaviruses: Structures and functions of a large multi-domain protein.
pubmed doi rcsb
source organism Middle east respiratory syndrome coronavirus
total genus 54
structure length 167
sequence length 167
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2016-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 5holA00
4ZI6A 2VRIA 1LAMA 2EEEA 3PEIA 3SIJA 3SIIA 3H8GA 3Q71A 3EJFA 1LCPA 2FG1A 2L8RA 3V2BA 1SPVA 3EWOA 5HOLA 4JLLA 4JCAA 2BFQA 2ACFA 4ESSA 5E3BA 4GUAA 1TY8A 3VFQA 4JVVA 4JGKA 3GQOA 4ZY2A 5CB5A 3EW5A 3ETIA 1GYTA 5FSXA 4R76A 1NJRA 1ZR5A 2X47A 5D8NA 3Q6ZA 4ZY1A 3H8FA 4J5SA 4ABKA 3IJ3A 4X2TA 2LGRA 4D86A 4GVWA 1TXZA 4J4ZA 4ZY0A 4J5QA 3GPOA 2AFCA 4KSIA 4R6TA 4TU0A 3KQXA 3EKEA 4K3NA 3H8EA 4ZX9A 5HIHA 1ZR3A 5CMSA 4ETJA 4ABLA 4ETKA 3JZTA 5FSUA 4IQYA 4ZX8A 3JRUA 4R7MA 3T8WA 2DX6A 5FSVA 2EWBA 1BPNA 2FAVA 3V45A 1BPMA 2FXKA 3GPGA 5CB3A 3EJGA 3EWQA 2XD7A 1VHUA 3GQEA 5FSYA 3KQZA 5CBMA 3EWRA 3EWPA 4J5RA 1LANA 4K0CA 3GPQA 3IIFA 4GVVA 1YD9A 4KYBA 3SIGA 5FSZA 1HJZA 4ZYQA 3IIDA 3KZWA 4UMLA 2J9AA 1BLLE 3KR4A 2BFRA 5AILA 1LAPA 5DUSA 3SIHA 3KR5A
chains in the Genus database with same CATH superfamily
4ZI6A 2RNKA 2VRIA 2W2GA 1LAMA 2EEEA 3PEIA 3SIJA 3SIIA 3H8GA 3Q71A 3EJFA 1LCPA 2FG1A 2L8RA 3V2BA 1SPVA 3EWOA 5HOLA 4JLLA 4JCAA 2BFQA 2ACFA 4ESSA 5E3BA 4GUAA 1TY8A 3VFQA 4JVVA 4JGKA 3GQOA 4ZY2A 5CB5A 3EW5A 3ETIA 1GYTA 5FSXA 4R76A 1NJRA 1ZR5A 2X47A 5D8NA 2JZDA 3Q6ZA 4ZY1A 3H8FA 4J5SA 4ABKA 3IJ3A 4X2TA 2LGRA 2WCTA 4D86A 4GVWA 2JZFA 1TXZA 4J4ZA 4ZY0A 4J5QA 3GPOA 2AFCA 4KSIA 4R6TA 4TU0A 3KQXA 3EKEA 4K3NA 3H8EA 4ZX9A 5HIHA 1ZR3A 5CMSA 4ETJA 2KQVA 4ABLA 4ETKA 3JZTA 5FSUA 4IQYA 4ZX8A 3JRUA 4R7MA 3T8WA 2DX6A 5FSVA 2EWBA 1BPNA 2FAVA 3V45A 1BPMA 2FXKA 2JZEA 3GPGA 5CB3A 3EJGA 3EWQA 2XD7A 1VHUA 3GQEA 5FSYA 3KQZA 5CBMA 3EWRA 3EWPA 4J5RA 1LANA 4K0CA 3GPQA 3IIFA 4GVVA 1YD9A 4KYBA 3SIGA 5FSZA 1HJZA 4ZYQA 3IIDA 3KZWA 4UMLA 2J9AA 1BLLE 3KR4A 2BFRA 5AILA 1LAPA 5DUSA 3SIHA 3KR5A
chains in the Genus database with same CATH topology
4ZI6A 2VRIA 1LAMA 2EEEA 3PEIA 3SIJA 3SIIA 3H8GA 3Q71A 3EJFA 1LCPA 2FG1A 2L8RA 3V2BA 1SPVA 3EWOA 5HOLA 4JLLA 4JCAA 2BFQA 2ACFA 4ESSA 5E3BA 4GUAA 1TY8A 3VFQA 4JVVA 4JGKA 3GQOA 4ZY2A 5CB5A 3EW5A 3ETIA 1GYTA 5FSXA 4R76A 1NJRA 1ZR5A 2X47A 5D8NA 3Q6ZA 4ZY1A 3H8FA 4J5SA 4ABKA 3IJ3A 4X2TA 2LGRA 4D86A 4GVWA 1TXZA 4J4ZA 4ZY0A 4J5QA 3GPOA 2AFCA 4KSIA 4R6TA 4TU0A 3KQXA 3EKEA 4K3NA 3H8EA 4ZX9A 5HIHA 1ZR3A 5CMSA 4ETJA 4ABLA 4ETKA 3JZTA 5FSUA 4IQYA 4ZX8A 3JRUA 4R7MA 3T8WA 2DX6A 5FSVA 2EWBA 1BPNA 2FAVA 3V45A 1BPMA 2FXKA 3GPGA 5CB3A 3EJGA 3EWQA 2XD7A 1VHUA 3GQEA 5FSYA 3KQZA 5CBMA 3EWRA 3EWPA 4J5RA 1LANA 4K0CA 3GPQA 3IIFA 4GVVA 1YD9A 4KYBA 3SIGA 5FSZA 1HJZA 4ZYQA 3IIDA 3KZWA 4UMLA 2J9AA 1BLLE 3KR4A 2BFRA 5AILA 1LAPA 5DUSA 3SIHA 3KR5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZI6 A;  2VRI A;  1LAM A;  2EEE A;  3PEI A;  3SIJ A;  3SII A;  3H8G A;  3Q71 A;  3EJF A;  1LCP A;  2FG1 A;  2L8R A;  3V2B A;  1SPV A;  3EWO A;  5HOL A;  4JLL A;  4JCA A;  2BFQ A;  2ACF A;  4ESS A;  5E3B A;  4GUA A;  1TY8 A;  3VFQ A;  4JVV A;  4JGK A;  3GQO A;  4ZY2 A;  5CB5 A;  3EW5 A;  3ETI A;  1GYT A;  5FSX A;  4R76 A;  1NJR A;  1ZR5 A;  2X47 A;  5D8N A;  3Q6Z A;  4ZY1 A;  3H8F A;  4J5S A;  4ABK A;  3IJ3 A;  4X2T A;  2LGR A;  4D86 A;  4GVW A;  1TXZ A;  4J4Z A;  4ZY0 A;  4J5Q A;  3GPO A;  2AFC A;  4KSI A;  4R6T A;  4TU0 A;  3KQX A;  3EKE A;  4K3N A;  3H8E A;  4ZX9 A;  5HIH A;  1ZR3 A;  5CMS A;  4ETJ A;  4ABL A;  4ETK A;  3JZT A;  5FSU A;  4IQY A;  4ZX8 A;  3JRU A;  4R7M A;  3T8W A;  2DX6 A;  5FSV A;  2EWB A;  1BPN A;  2FAV A;  3V45 A;  1BPM A;  2FXK A;  3GPG A;  5CB3 A;  3EJG A;  3EWQ A;  2XD7 A;  1VHU A;  3GQE A;  5FSY A;  3KQZ A;  5CBM A;  3EWR A;  3EWP A;  4J5R A;  1LAN A;  4K0C A;  3GPQ A;  3IIF A;  4GVV A;  1YD9 A;  4KYB A;  3SIG A;  5FSZ A;  1HJZ A;  4ZYQ A;  3IID A;  3KZW A;  4UML A;  2J9A A;  1BLL E;  3KR4 A;  2BFR A;  5AIL A;  1LAP A;  5DUS A;  3SIH A;  3KR5 A; 
#chains in the Genus database with same CATH topology
 4ZI6 A;  2RNK A;  2VRI A;  2W2G A;  1LAM A;  2EEE A;  3PEI A;  3SIJ A;  3SII A;  3H8G A;  3Q71 A;  3EJF A;  1LCP A;  2FG1 A;  2L8R A;  3V2B A;  1SPV A;  3EWO A;  5HOL A;  4JLL A;  4JCA A;  2BFQ A;  2ACF A;  4ESS A;  5E3B A;  4GUA A;  1TY8 A;  3VFQ A;  4JVV A;  4JGK A;  3GQO A;  4ZY2 A;  5CB5 A;  3EW5 A;  3ETI A;  1GYT A;  5FSX A;  4R76 A;  1NJR A;  1ZR5 A;  2X47 A;  5D8N A;  2JZD A;  3Q6Z A;  4ZY1 A;  3H8F A;  4J5S A;  4ABK A;  3IJ3 A;  4X2T A;  2LGR A;  2WCT A;  4D86 A;  4GVW A;  2JZF A;  1TXZ A;  4J4Z A;  4ZY0 A;  4J5Q A;  3GPO A;  2AFC A;  4KSI A;  4R6T A;  4TU0 A;  3KQX A;  3EKE A;  4K3N A;  3H8E A;  4ZX9 A;  5HIH A;  1ZR3 A;  5CMS A;  4ETJ A;  2KQV A;  4ABL A;  4ETK A;  3JZT A;  5FSU A;  4IQY A;  4ZX8 A;  3JRU A;  4R7M A;  3T8W A;  2DX6 A;  5FSV A;  2EWB A;  1BPN A;  2FAV A;  3V45 A;  1BPM A;  2FXK A;  2JZE A;  3GPG A;  5CB3 A;  3EJG A;  3EWQ A;  2XD7 A;  1VHU A;  3GQE A;  5FSY A;  3KQZ A;  5CBM A;  3EWR A;  3EWP A;  4J5R A;  1LAN A;  4K0C A;  3GPQ A;  3IIF A;  4GVV A;  1YD9 A;  4KYB A;  3SIG A;  5FSZ A;  1HJZ A;  4ZYQ A;  3IID A;  3KZW A;  4UML A;  2J9A A;  1BLL E;  3KR4 A;  2BFR A;  5AIL A;  1LAP A;  5DUS A;  3SIH A;  3KR5 A; 
#chains in the Genus database with same CATH homology
 4ZI6 A;  2VRI A;  1LAM A;  2EEE A;  3PEI A;  3SIJ A;  3SII A;  3H8G A;  3Q71 A;  3EJF A;  1LCP A;  2FG1 A;  2L8R A;  3V2B A;  1SPV A;  3EWO A;  5HOL A;  4JLL A;  4JCA A;  2BFQ A;  2ACF A;  4ESS A;  5E3B A;  4GUA A;  1TY8 A;  3VFQ A;  4JVV A;  4JGK A;  3GQO A;  4ZY2 A;  5CB5 A;  3EW5 A;  3ETI A;  1GYT A;  5FSX A;  4R76 A;  1NJR A;  1ZR5 A;  2X47 A;  5D8N A;  3Q6Z A;  4ZY1 A;  3H8F A;  4J5S A;  4ABK A;  3IJ3 A;  4X2T A;  2LGR A;  4D86 A;  4GVW A;  1TXZ A;  4J4Z A;  4ZY0 A;  4J5Q A;  3GPO A;  2AFC A;  4KSI A;  4R6T A;  4TU0 A;  3KQX A;  3EKE A;  4K3N A;  3H8E A;  4ZX9 A;  5HIH A;  1ZR3 A;  5CMS A;  4ETJ A;  4ABL A;  4ETK A;  3JZT A;  5FSU A;  4IQY A;  4ZX8 A;  3JRU A;  4R7M A;  3T8W A;  2DX6 A;  5FSV A;  2EWB A;  1BPN A;  2FAV A;  3V45 A;  1BPM A;  2FXK A;  3GPG A;  5CB3 A;  3EJG A;  3EWQ A;  2XD7 A;  1VHU A;  3GQE A;  5FSY A;  3KQZ A;  5CBM A;  3EWR A;  3EWP A;  4J5R A;  1LAN A;  4K0C A;  3GPQ A;  3IIF A;  4GVV A;  1YD9 A;  4KYB A;  3SIG A;  5FSZ A;  1HJZ A;  4ZYQ A;  3IID A;  3KZW A;  4UML A;  2J9A A;  1BLL E;  3KR4 A;  2BFR A;  5AIL A;  1LAP A;  5DUS A;  3SIH A;  3KR5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...